The UCSC genome browser database: update 2007.

by: RM Kuhn, D Karolchik, AS Zweig, H Trumbower, DJ Thomas, A Thakkapallayil, CW Sugnet, M Stanke, KE Smith, A Siepel, KR Rosenbloom, B Rhead, BJ Raney, A Pohl, JS Pedersen, F Hsu, AS Hinrichs, RA Harte, M Diekhans, H Clawson, G Bejerano, GP Barber, R Baertsch, D Haussler, WJ Kent

Nucleic Acids Res, Vol. 35, No. Database issue. (January 2007)

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Abstract

The University of California, Santa Cruz Genome Browser Database contains, as of September 2006, sequence and annotation data for the genomes of 13 vertebrate and 19 invertebrate species. The Genome Browser displays a wide variety of annotations at all scales from the single nucleotide level up to a full chromosome and includes assembly data, genes and gene predictions, mRNA and EST alignments, and comparative genomics, regulation, expression and variation data. The database is optimized for fast interactive performance with web tools that provide powerful visualization and querying capabilities for mining the data. In the past year, 22 new assemblies and several new sets of human variation annotation have been released. New features include VisiGene, a fully integrated in situ hybridization image browser; phyloGif, for drawing evolutionary tree diagrams; a redesigned Custom Track feature; an expanded SNP annotation track; and many new display options. The Genome Browser, other tools, downloadable data files and links to documentation and other information can be found at http://genome.ucsc.edu/.

@article{citeulike:1138879, abstract = {The University of California, Santa Cruz Genome Browser Database contains, as of September 2006, sequence and annotation data for the genomes of 13 vertebrate and 19 invertebrate species. The Genome Browser displays a wide variety of annotations at all scales from the single nucleotide level up to a full chromosome and includes assembly data, genes and gene predictions, mRNA and EST alignments, and comparative genomics, regulation, expression and variation data. The database is optimized for fast interactive performance with web tools that provide powerful visualization and querying capabilities for mining the data. In the past year, 22 new assemblies and several new sets of human variation annotation have been released. New features include VisiGene, a fully integrated in situ hybridization image browser; phyloGif, for drawing evolutionary tree diagrams; a redesigned Custom Track feature; an expanded SNP annotation track; and many new display options. The Genome Browser, other tools, downloadable data files and links to documentation and other information can be found at http://genome.ucsc.edu/.}, address = {Center for Biomolecular Science and Engineering, University of California Santa Cruz (UCSC), Santa Cruz, CA 95064, USA. kuhn@soe.ucsc.edu}, author = {Kuhn, R. M. and Karolchik, D. and Zweig, A. S. and Trumbower, H. and Thomas, D. J. and Thakkapallayil, A. and Sugnet, C. W. and Stanke, M. and Smith, K. E. and Siepel, A. and Rosenbloom, K. R. and Rhead, B. and Raney, B. J. and Pohl, A. and Pedersen, J. S. and Hsu, F. and Hinrichs, A. S. and Harte, R. A. and Diekhans, M. and Clawson, H. and Bejerano, G. and Barber, G. P. and Baertsch, R. and Haussler, D. and Kent, W. J. }, citeulike-article-id = {1138879}, issn = {1362-4962}, journal = {Nucleic Acids Res}, keywords = {browser, genome, ucsc}, month = {January}, number = {Database issue}, posted-at = {2007-06-11 04:07:58}, priority = {2}, title = {The UCSC genome browser database: update 2007.}, url = {http://view.ncbi.nlm.nih.gov/pubmed/17142222}, volume = {35}, year = {2007} }

RIS record

TY - JOUR ID - citeulike:1138879 L3 - citeulike-article-id:1138879 TI - The UCSC genome browser database: update 2007. JF - Nucleic Acids Res VL - 35 IS - Database issue AD - Center for Biomolecular Science and Engineering, University of California Santa Cruz (UCSC), Santa Cruz, CA 95064, USA. kuhn@soe.ucsc.edu SN - 1362-4962 N2 - The University of California, Santa Cruz Genome Browser Database contains, as of September 2006, sequence and annotation data for the genomes of 13 vertebrate and 19 invertebrate species. The Genome Browser displays a wide variety of annotations at all scales from the single nucleotide level up to a full chromosome and includes assembly data, genes and gene predictions, mRNA and EST alignments, and comparative genomics, regulation, expression and variation data. The database is optimized for fast interactive performance with web tools that provide powerful visualization and querying capabilities for mining the data. In the past year, 22 new assemblies and several new sets of human variation annotation have been released. New features include VisiGene, a fully integrated in situ hybridization image browser; phyloGif, for drawing evolutionary tree diagrams; a redesigned Custom Track feature; an expanded SNP annotation track; and many new display options. The Genome Browser, other tools, downloadable data files and links to documentation and other information can be found at http://genome.ucsc.edu/. KW - browser KW - genome KW - ucsc AU - Kuhn, RM AU - Karolchik, D AU - Zweig, AS AU - Trumbower, H AU - Thomas, DJ AU - Thakkapallayil, A AU - Sugnet, CW AU - Stanke, M AU - Smith, KE AU - Siepel, A AU - Rosenbloom, KR AU - Rhead, B AU - Raney, BJ AU - Pohl, A AU - Pedersen, JS AU - Hsu, F AU - Hinrichs, AS AU - Harte, RA AU - Diekhans, M AU - Clawson, H AU - Bejerano, G AU - Barber, GP AU - Baertsch, R AU - Haussler, D AU - Kent, WJ PY - 2007/01// UR - http://view.ncbi.nlm.nih.gov/pubmed/17142222 ER -

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