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mmuecke bioinformatics [14 articles]

Recent papers added to mmuecke library classified by the tag bioinformatics. You can also see everyone's bioinformatics.
  • A Survey of FPGAs for Acceleration of High Performance Computing and their Application to Computational Molecular Biology
    TENCON 2005 2005 IEEE Region 10 (2005), pp. 1-6.
    by T Ramdas, G Egan
    posted to bioinformatics fpgasupercomputing genomesequencing molecular_docking molecular_dynamics reconfigurable_computing survey trends by mmuecke on 2008-07-01 08:14:09 as ** along with 1 person and 1 group nevarcds Reconfigurable Computing
  • Reconfigurable architectures for bio-sequence database scanning on FPGAs
    Circuits and Systems II: Express Briefs, IEEE Transactions on [see also Circuits and Systems II: Analog and Digital Signal Processing, IEEE Transactions on], Vol. 52, No. 12. (2005), pp. 851-855.
    by TF Oliver, B Schmidt, DL Maskell
    posted to bioinformatics fpga protein_sequences reconfigurable_computing by mmuecke on 2008-01-30 18:34:00 as **
  • Grid computing and biomolecular simulation
    Philosophical Transactions of the Royal Society A: Mathematical, Physical and Engineering Sciences, Vol. 363, No. 1833. (2005), pp. 2017-2035.
    by Christopher J Woods, Muan H Ng, Steven Johnston, Stuart E Murdock, Bing Wu, Kaihsu Tai, Hans Fangohr, Paul Jeffreys, Simon Cox, Jeremy G Frey, Mark S Sansom, Jonathan W Essex
    posted to bioinformatics high-performance_computing molecular_docking molecular_dynamics by mmuecke on 2008-01-21 12:27:45 as read
  • Protein-Protein Interfaces: Properties, Preferences, and Projections
    J. Proteome Res., Vol. 6, No. 7. (6 July 2007), pp. 2576-2586.
    by JJ Headd, YEA Ban, P Brown, H Edelsbrunner, M Vaidya, J Rudolph
    posted to bioinformatics molecular_docking by mmuecke on 2008-01-08 16:58:26 as ** along with 1 person higueruelo
  • notes Structure-based virtual screening: an overview
    Drug Discovery Today, Vol. 7, No. 20. (15 October 2002), pp. 1047-1055.
    by Paul D Lyne
    posted to bioinformatics molecular_docking by mmuecke on 2007-03-01 12:10:43 as read along with 1 person nickolay
  • notes Accelerator design for protein sequence HMM search
    (2006), pp. 288-296.
    by Rahul P Maddimsetty, Jeremy Buhler, Roger D Chamberlain, Mark A Franklin, Brandon Harris
    posted to bioinformatics fpga protein_sequences by mmuecke on 2007-02-21 15:04:52 as **
  • Hardware-accelerated analysis of non-protein-coding RNAs
    (2005)
    by Ola Snøve
    posted to bioinformatics fpga by mmuecke on 2007-02-15 16:43:07 as **
  • Real-time primer design for DNA chips
    Parallel and Distributed Processing Symposium, 2003. Proceedings. International (2003), 8 pp..
    by H Simmler, H Singpiel, R Manner
    posted to bioinformatics fpga by mmuecke on 2006-12-07 19:02:19 as **
  • An experimental study of optimizing bioinformatics applications
    Parallel and Distributed Processing Symposium, 2006. IPDPS 2006. 20th International (2006), 8 pp..
    by Guangming Tan, Lin Xu, Shengzhong Feng, Ninghui Sun
    posted to bioinformatics fpga fpgasupercomputing by mmuecke on 2006-12-07 18:57:29 as ** along with 1 person smithmc
  • Protein Explorer: A Petaflops Special-Purpose Computer System for Molecular Dynamics Simulations
    (2003)
    by Makoto Taiji, Tetsu Narumi, Yousuke Ohno, Noriyuki Futatsugi, Atsushi Suenaga, Naoki Takada, Akihiko Konagaya
    posted to bioinformatics high-performance_computing by mmuecke on 2006-11-28 13:00:33 as ****
  • notes Heterogeneous Processing: a Strategy for Augmenting Moore's Law
    Linux Journal
    by Amar Shan
    posted to bioinformatics fpgasupercomputing genomesequencing by mmuecke on 2006-11-23 18:05:32 as read
  • Bioinformatics—an introduction for computer scientists
    ACM Comput. Surv., Vol. 36, No. 2. (June 2004), pp. 122-158.
    by Jacques Cohen
    posted to bioinformatics by mmuecke on 2006-11-13 14:57:15 as ** along with 12 people and 3 groups pwais neilernst malenitah2 asilva Ayest smithco eweaver afragop bigbossman sugarexpletive quianominorleo bozdagd CHISEL Complex_Real_Networks Plant-Tissue-Simulation
  • Genome-Scale Computational Approaches to Memory-Intensive Applications in Systems Biology
    (2005)
    by Yun Zhang, Faisal N Abu-Khzam, Nicole E Baldwin, Elissa J Chesler, Michael A Langston, Nagiza F Samatova
    posted to bioinformatics by mmuecke on 2006-11-13 14:42:44 as ** along with 1 person and 1 group AbnerCYH CSBBGraphTheory
  • Manifold similarity search of DNA sequences with reconfigurable hardware
    (2006), pp. 231-231.
    by Thinh N Tran, Surin Kittitornkun, Shigenori Tomiyama
    posted to bioinformatics genomesequencing by mmuecke on 2006-10-30 14:12:34 as **
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