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monod library [83 articles]

Статьи, недавно добавленные в библиотеку monod .
  • Efficiency, Robustness and Stochasticity of Gene Regulatory Networks in Systems Biology: lambda Switch as a Working Example
    (2 Dec 2005)
    by X Zhu, L Yin, L Hood, D Galas, P Ao
    posted to robustness by monod on 2005-12-06 14:39:57 as ** along with 2 people entropy mmt
  • Robustness and Evolvability in Living Systems (Princeton Studies in Complexity)
    (01 August 2005)
    by Andreas Wagner
    posted to robustness by monod on 2005-12-03 00:09:27 as ** along with 5 people and 2 groups rklancer balicea chokma livingthingdan timflutre Controllers livingthing
  • Modern theories of metabolic control and their applications (review).
    Biosci Rep, Vol. 4, No. 1. (January 1984), pp. 1-22.
    by HV Westerhoff, AK Groen, RJ Wanders
    posted to metabolic_network robustness by monod on 2005-12-03 00:08:16 as **
  • Circuit topology and the evolution of robustness in two-gene circadian oscillators.
    Proc Natl Acad Sci U S A (8 August 2005)
    by Andreas Wagner
    posted to robustness by monod on 2005-12-03 00:07:46 as ** along with 2 people rklancer entropy
  • Robustness of cellular functions.
    Cell, Vol. 118, No. 6. (17 September 2004), pp. 675-685.
    by J Stelling, U Sauer, Z Szallasi, FJ Doyle, J Doyle
    posted to robustness by monod on 2005-12-03 00:07:30 as ** along with 7 people and 1 group camster rklancer jjray bayesian javierFellow fishtank perpetuale dbk-lab
  • Biological robustness.
    Nat Rev Genet, Vol. 5, No. 11. (November 2004), pp. 826-837.
    by H Kitano
    posted to robustness by monod on 2005-12-03 00:06:35 as read along with 13 people and 5 groups tomhebbron dbk betainverse korakot LeightonP bayesian teuder biosv madhadron nickluscombe anatiferous timflutre ekoenig streptomyces Philosophy_of_Information dbk-lab Blog_and_Wiki_Research EBI-regulation
  • Stochasticity in transcriptional regulation: origins, consequences, and mathematical representations.
    Biophys J, Vol. 81, No. 6. (December 2001), pp. 3116-3136.
    by TB Kepler, TC Elston
    posted to gene_regulation noise robustness by monod on 2005-12-03 00:05:59 as ** along with 2 people jjray margaritis
  • Integrative analysis of cell cycle control in budding yeast.
    Mol Biol Cell, Vol. 15, No. 8. (August 2004), pp. 3841-3862.
    by KC Chen, L Calzone, A Csikasz-Nagy, FR Cross, B Novak, JJ Tyson
    posted to cell-cycle gene_networks robustness yeast by monod on 2005-12-03 00:04:30 as ** along with 2 people jbchang RamuAnandakrishnan
  • Biological networks: the tinkerer as an engineer.
    Science, Vol. 301, No. 5641. (26 September 2003), pp. 1866-1867.
    by U Alon
    posted to robustness synthetic_biology by monod on 2005-12-03 00:03:35 as read along with 8 people and 2 groups Borelli alexg ddahlem shivakumar3_14 cmm lshaw rebeccamancy Ema FAB-lab ColDyn
  • The driving force for life's emergence: kinetic and thermodynamic considerations.
    J Theor Biol, Vol. 220, No. 3. (7 February 2003), pp. 393-406.
    by A Pross
    posted to origin-of-life theory by monod on 2005-12-01 18:15:24 as **
  • Jump-starting a cellular world: investigating the origin of life, from soup to networks.
    PLoS Biol, Vol. 3, No. 11. (November 2005)
    by R Robinson
    posted to evolution network-motifs origin-of-life synthetic_biology systems_biology theory by monod on 2005-11-30 19:06:44 as read along with 9 people tmmurali imouthesmp dayjm Schmidtc balicea balabu jsnoddy mbeautru gulsacan
  • Surviving heat shock: control strategies for robustness and performance.
    Proc Natl Acad Sci U S A, Vol. 102, No. 8. (22 February 2005), pp. 2736-2741.
    by H El-Samad, H Kurata, JC Doyle, CA Gross, M Khammash
    posted to robustness by monod on 2005-11-30 19:02:22 as *** along with 2 people jjray madhadron
  • Motifs, control, and stability.
    PLoS Biol, Vol. 3, No. 11. (November 2005)
    by J Doyle, M Csete
    posted to control robustness stability by monod on 2005-11-29 21:00:50 as **** along with 5 people rklancer bayesian balicea javierFellow entropy
  • Artificial cell-cell communication in yeast Saccharomyces cerevisiae using signaling elements from Arabidopsis thaliana.
    Nat Biotechnol (20 November 2005)
    by Ming-Tang T Chen, Ron Weiss
    posted to signaling synthetic_biology by monod on 2005-11-29 21:00:03 as ** along with 1 person rklancer
  • Fundamental issues in systems biology.
    Bioessays, Vol. 27, No. 12. (December 2005), pp. 1270-1276.
    by Maureen A A O'malley, John Dupré
    posted to philosophy-biology systems_biology theory by monod on 2005-11-27 23:00:03 as read along with 5 people LeightonP eweaver wnpx biosv maralena
  • Foundations for engineering biology
    Nature, Vol. 438, No. 7067., pp. 449-453.
    by Drew Endy
    posted to synthetic_biology by monod on 2005-11-25 16:29:52 as read along with 9 people and 1 group austin dbikard jmeppley eweaver perrywoo johncumbers pirapira kevinchannon jonsta247 SynBioSys
  • Design principles of a bacterial signalling network
    Nature, Vol. 438, No. 7067., pp. 504-507.
    by Markus Kollmann, Linda Løvdok, Kilian Bartholomé, Jens Timmer, Victor Sourjik
    posted to control evolution modeling network-motifs robustness systems_biology by monod on 2005-11-25 16:29:34 as ** along with 13 people jjray rklancer abhik chrn jmeppley bayesian alexg ryang balicea wnpx balabu entropy comb
  • Reconstruction of genetic circuits
    Nature, Vol. 438, No. 7067., pp. 443-448.
    by David Sprinzak, Michael B Elowitz
    posted to gene_networks synthetic_biology systems_biology by monod on 2005-11-25 16:29:04 as *** along with 5 people rklancer tuck jmeppley avery dbikard
  • Robustness in bacterial chemotaxis.
    Nature, Vol. 397, No. 6715. (14 January 1999), pp. 168-171.
    by U Alon, MG Surette, N Barkai, S Leibler
    posted to robustness by monod on 2005-11-15 15:17:24 as *** along with 4 people rklancer nsamways balajis nirfriedman
  • Robustness in simple biochemical networks.
    Nature, Vol. 387, No. 6636. (26 June 1997), pp. 913-917.
    by N Barkai, S Leibler
    posted to robustness by monod on 2005-11-15 15:16:48 as read along with 6 people and 1 group nsamways rklancer chrn bayesian adepace josepe EisenLab
  • Redundancy, antiredundancy, and the robustness of genomes.
    Proc Natl Acad Sci U S A, Vol. 99, No. 3. (5 February 2002), pp. 1405-1409.
    by DC Krakauer, JB Plotkin
    posted to robustness by monod on 2005-11-12 16:35:10 as read along with 2 people operon RedmondSmyth
  • A function-based framework for understanding biological systems.
    Annu Rev Biophys Biomol Struct, Vol. 33 (2004), pp. 75-93.
    by JD Thomas, T Lee, NP Suh
    posted to biological-function gene_networks modeling robustness systems_biology by monod on 2005-11-12 15:11:47 as ** along with 2 people eweaver mbeautru
  • Dynamic Properties of Network Motifs Contribute to Biological Network Organization.
    PLoS Biol, Vol. 3, No. 11. (4 October 2005)
    by Robert J J Prill, Pablo A A Iglesias, Andre Levchenko
    posted to robustness by monod on 2005-11-12 15:00:48 as **** along with 10 people and 1 group marck phoenixzxl tmmurali textoris bayesian luispedro xinian jdiggans watson stefanoallesina NeuralNetworks
  • Multiple feedback loops are key to a robust dynamic performance of tryptophan regulation in Escherichia coli.
    FEBS Lett, Vol. 563, No. 1-3. (9 April 2004), pp. 234-240.
    by KV Venkatesh, S Bhartiya, A Ruhela
    posted to robustness by monod on 2005-11-11 03:21:13 as read along with 1 person alexg
  • Design and Diversity in Bacterial Chemotaxis: A Comparative Study in Escherichia coli and Bacillus subtilis
    PLoS Biology, Vol. 2, No. 2. (February 2004), pp. E49-E49.
    by Christopher V Rao, John R Kirby, Adam P Arkin
    posted to robustness by monod on 2005-11-08 14:59:06 as ***
  • Modeling network dynamics: the lac operon, a case study
    The Journal Of Cell Biology, Vol. 161, No. 3. (12 May 2003), pp. 471-476.
    by Jose M Vilar, Calin C Guet, Stanislas Leibler
    posted to gene_networks modeling modeling-general by monod on 2005-11-08 14:35:12 as ***
  • Analysis of optimality in natural and perturbed metabolic networks
    Proceedings Of The National Academy Of Sciences Of The United States Of America, Vol. 99, No. 23. (12 November 2002), pp. 15112-15117.
    by Daniel Segre, Dennis Vitkup, George M Church
    posted to optimality robustness by monod on 2005-11-08 14:34:17 as *** along with 1 person Borelli
  • Metabolic network structure determines key aspects of functionality and regulation
    Nature, Vol. 420, No. 6912. (14 November 2002), pp. 190-193.
    by Jorg Stelling, Steffen Klamt, Katja Bettenbrock, Stefan Schuster, Ernst D Gilles
    posted to optimality robustness by monod on 2005-11-08 14:33:57 as ** along with 1 person and 1 group JeremyZucker MetabolicModeling
  • Escherichia coli K-12 undergoes adaptive evolution to achieve in silico predicted optimal growth
    Nature, Vol. 420, No. 6912. (14 November 2002), pp. 186-189.
    by Rafael U Ibarra, Jeremy S Edwards, Bernhard O Palsson
    posted to optimality robustness by monod on 2005-11-08 14:33:15 as ***
  • An amplified sensitivity arising from covalent modification in biological systems.
    Proc Natl Acad Sci U S A, Vol. 78, No. 11. (November 1981), pp. 6840-6844.
    by A Goldbeter, DE Koshland
    posted to biochemistry control modeling signaling by monod on 2005-11-03 13:59:00 as *** along with 4 people and 1 group rklancer jjray jbchang lenov compneur
  • The selective values of alleles in a molecular network model are context dependent.
    Genetics, Vol. 166, No. 4. (April 2004), pp. 1715-1725.
    by J Peccoud, KV Velden, D Podlich, C Winkler, L Arthur, M Cooper
    posted to evolution gene_networks by monod on 2005-11-01 14:41:14 as *** along with 4 people rklancer RMGraze balicea christiw
  • Reverse engineering of biological complexity.
    Science, Vol. 295, No. 5560. (1 March 2002), pp. 1664-1669.
    by ME Csete, JC Doyle
    posted to robustness systems_biology by monod on 2005-10-31 17:40:37 as read along with 17 people and 6 groups bayesian edvin camster snuppepuppan barry lyongu wnpx ddahlem dullhunk adepace javierFellow livingthingdan OriginalLurch anatiferous timflutre dbilar jrbanga dbk-lab structural_bioinformatics Bioinformatics EisenLab livingthing clab
  • Can a biologist fix a radio?--Or, what I learned while studying apoptosis.
    Cancer Cell, Vol. 2, No. 3. (September 2002), pp. 179-182.
    by Y Lazebnik
    posted to systems_biology by monod on 2005-10-31 17:40:21 as read along with 15 people and 6 groups bayesian leilaperie Tominator dbikard balicea mattjb tvdbulck quianominorleo rklancer dbk irenas manduca chihchun_chen massivemayhem gisle SynBioSys Centre de Recherches Interdisciplinaires DSTO-CAS ComplexAdaptiveSystems streptomyces dbk-lab
  • 5th International Conference on Systems Biology (ICSB 2004), Heidelberg, October 9-13, 2004.
    Biosystems (18 October 2005)
    by Stefan Schuster, Roland Eils, Klaus Prank
    posted to outlook systems_biology by monod on 2005-10-31 17:28:17 as read along with 1 person rabu
  • A switch from high-fidelity to error-prone DNA double-strand break repair underlies stress-induced mutation.
    Mol Cell, Vol. 19, No. 6. (16 September 2005), pp. 791-804.
    by RG Ponder, NC Fonville, SM Rosenberg
    posted to evolution stability by monod on 2005-10-28 06:50:31 as ** along with 2 people rklancer christiw
  • Core genetic module: The mixed feedback loop.
    Phys Rev E Stat Nonlin Soft Matter Phys, Vol. 72, No. 3 Pt 1. (September 2005)
    by P François, V Hakim
    posted to control gene_networks multistability network-motifs by monod on 2005-10-28 06:48:13 as read
  • Interlinked Fast and Slow Positive Feedback Loops Drive Reliable Cell Decisions
    Science, Vol. 310, No. 5747. (21 October 2005), pp. 496-498.
    by Onn Brandman, James E Ferrell, Rong Li, Tobias Meyer
    posted to gene_networks systems_biology by monod on 2005-10-24 00:30:52 as read along with 8 people rklancer jyuh kentsis tuck jmeppley balajis wnpx margaritis
  • Multisite protein phosphorylation makes a good threshold but can be a poor switch.
    Proc Natl Acad Sci U S A (29 September 2005)
    by Jeremy Gunawardena
    posted to control multistability signaling switch by monod on 2005-10-04 15:37:26 as ** along with 1 person rklancer
  • Perspective: Evolution and detection of genetic robustness.
    Evolution Int J Org Evolution, Vol. 57, No. 9. (September 2003), pp. 1959-1972.
    by JA de Visser, J Hermisson, GP Wagner, L Ancel Meyers, H Bagheri-Chaichian, JL Blanchard, L Chao, JM Cheverud, SF Elena, W Fontana, G Gibson, TF Hansen, D Krakauer, RC Lewontin, C Ofria, SH Rice, G von Dassow, A Wagner, MC Whitlock
    posted to robustness by monod on 2005-10-01 03:59:35 as read
  • Robustness as a measure of plausibility in models of biochemical networks.
    J Theor Biol, Vol. 216, No. 1. (7 May 2002), pp. 19-30.
    by M Morohashi, AE Winn, MT Borisuk, H Bolouri, J Doyle, H Kitano
    posted to robustness by monod on 2005-09-30 21:00:10 as ** along with 3 people and 1 group camster snuppepuppan samal dbk-lab
  • Noise in Gene Expression: Origins, Consequences, and Control
    Science, Vol. 309, No. 5743. (23 September 2005), pp. 2010-2013.
    by Jonathan M Raser, Erin K O'Shea
    posted to noise systems_biology by monod on 2005-09-29 06:59:34 as *** along with 12 people and 2 groups klo kagibbs dylanwalker shikin rklancer dayjm xico nirfriedman koller mhucka margaritis suizan GeneGo WetBiology
  • Systems biologyDeviations in mating
    Nature, Vol. 437, No. 7059. (28 September 2005), pp. 631-632.
    by Avigdor Eldar, Michael Elowitz
    posted to measurement noise systems_biology yeast by monod on 2005-09-29 06:57:17 as *** along with 2 people dayjm biosv
  • Regulated cell-to-cell variation in a cell-fate decision system
    Nature (18 September 2005)
    by Alejandro Colman-Lerner, Andrew Gordon, Eduard Serra, Tina Chin, Orna Resnekov, Drew Endy, Gustavo C Pesce, Roger Brent
    posted to measurement noise systems_biology yeast by monod on 2005-09-29 06:56:19 as *** along with 8 people rklancer imouthesmp biosv balabu jiyu johncumbers jtaylor margaritis
  • Spontaneous evolution of modularity and network motifs.
    Proc Natl Acad Sci U S A (20 September 2005)
    by Nadav Kashtan, Uri Alon
    posted to evolution gene_networks systems_biology theory by monod on 2005-09-27 19:51:25 as read along with 15 people and 6 groups carlk mcphee marimo Borelli alexg i41m cmm Peterfine javierFellow rgb mattjb rebeccamancy cwr phreeza stefanoallesina MathBio FAB-lab ComplexAdaptiveSystems pileWorks DSTO-CAS ColDyn
  • Limitations of quantitative gene regulation models: a case study.
    Genome Res, Vol. 13, No. 11. (November 2003), pp. 2391-2395.
    by PM Kim, B Tidor
    posted to gene_regulation by monod on 2005-09-27 07:09:47 as ** along with 4 people rklancer wnpx mmt lambda
  • Phenotypic Diversity, Population Growth, and Information in Fluctuating Environments.
    Science (25 August 2005)
    by Edo Kussell, Stanislas Leibler
    posted to evolution by monod on 2005-09-26 07:26:59 as ** along with 5 people zambujo rklancer jjray dbikard mhucka
  • Bio-switches: what makes them robust?
    Curr Opin Genet Dev, Vol. 14, No. 4. (August 2004), pp. 428-434.
    by BM Slepchenko, M Terasaki
    posted to multistability by monod on 2005-09-26 07:22:43 as **
  • Bistability in cell signaling: How to make continuous processes discontinuous, and reversible processes irreversible.
    Chaos, Vol. 11, No. 1. (March 2001), pp. 227-236.
    by James E. E Ferrell, Wen Xiong
    posted to multistability by monod on 2005-09-26 07:22:32 as ** along with 2 people jbchang ullahmukhtar
  • Missense meanderings in sequence space: a biophysical view of protein evolution
    Nature Reviews Genetics, Vol. 6, No. 9. (01 September 2005), pp. 678-687.
    by Mark A Depristo, Daniel M Weinreich, Daniel L Hartl
    posted to evolution protein-evolution by monod on 2005-09-21 20:42:16 as ** along with 2 people rklancer ramensky
  • Bifurcation discovery tool.
    Bioinformatics, Vol. 21, No. 18. (15 September 2005), pp. 3688-3690.
    by V Chickarmane, SR Paladugu, F Bergmann, HM Sauro
    posted to modeling multistability theory by monod on 2005-09-17 15:48:41 as *** along with 1 person holan
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