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mtagaya library [543 articles]

Статьи, недавно добавленные в библиотеку mtagaya .
  • Position-specific chemical modification of siRNAs reduces "off-target" transcript silencing.
    RNA (8 May 2006)
    by Aimee L L Jackson, Julja Burchard, Devin Leake, Angela Reynolds, Janell Schelter, Jie Guo, Jason M M Johnson, Lee Lim, Jon Karpilow, Kim Nichols, William Marshall, Anastasia Khvorova, Peter S S Linsley
    posted to rnai off-target by mtagaya on 2008-05-01 09:05:08 as ** along with 2 people tardigrade lhonigberg
  • Experimental validation of the importance of seed complement frequency to siRNA specificity.
    RNA (New York, N.Y.), Vol. 14, No. 5. (May 2008), pp. 853-861.
    by EM Anderson, A Birmingham, S Baskerville, A Reynolds, E Maksimova, D Leake, Y Fedorov, J Karpilow, A Khvorova
    posted to sirna off-target by mtagaya on 2008-04-24 03:53:17 as **
  • Hidden layers of human small RNAs
    BMC Genomics, Vol. 9, No. 1. (2008)
    by Hideya Kawaji, Mari Nakamura, Yukari Takahashi, Albin Sandelin, Shintaro Katayama, Shiro Fukuda, Carsten Daub, Chikatoshi Kai, Jun Kawai, Jun Yasuda, Piero Carninci, Yoshihide Hayashizaki
    posted to sirna rna microrna by mtagaya on 2008-04-23 04:27:28 as ** along with 2 people maralena heliopais
  • Functional dissection of siRNA sequence by systematic DNA substitution: modified siRNA with a DNA seed arm is a powerful tool for mammalian gene silencing with significantly reduced off-target effect.
    Nucleic Acids Res (11 February 2008)
    by Kumiko Ui-Tei, Yuki Naito, Shuhei Zenno, Kenji Nishi, Kenji Yamato, Fumitaka Takahashi, Aya Juni, Kaoru Saigo
    posted to off-target sirna by mtagaya on 2008-04-17 15:13:21 as ** along with 3 people and 1 group jyuh sebastien_vigneau wsjames Oxford Virology
  • siRNA-mediated off-target gene silencing triggered by a 7 nt complementation
    Nucleic Acids Research, Vol. 33, No. 14. (2005), pp. 4527-4535.
    by Xiaoyu Lin, Xiaoan Ruan, Mark G Anderson, Jeffrey A Mcdowell, Paul E Kroeger, Stephen W Fesik, Yu Shen
    posted to off-target sirna by mtagaya on 2008-04-15 15:53:59 as **
  • A computational study of off-target effects of RNA interference
    Nucleic Acids Research, Vol. 33, No. 6. (2005), pp. 1834-1847.
    by Shibin Qiu, Coen M Adema, Terran Lane
    posted to off-target sirna by mtagaya on 2008-04-15 15:51:28 as **
  • A systematic analysis of the silencing effects of an active siRNA at all single-nucleotide mismatched target sites
    Nucleic Acids Research, Vol. 33, No. 5. (2005), pp. 1671-1677.
    by Quan Du, Hakan Thonberg, Jue Wang, Claes Wahlestedt, Zicai Liang
    posted to off-target sirna by mtagaya on 2008-04-15 15:44:15 as ** along with 1 person tardigrade
  • Analysis of microRNA-target interactions by a target structure based hybridization model.
    Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing (2008), pp. 64-74.
    by D Long, CY Chan, Y Ding
    posted to microrna structure target by mtagaya on 2008-04-15 08:57:10 as ** along with 1 person jfr
  • Nonbacterial prostatitis caused by partial urethral obstruction in the rat.
    Urological research, Vol. 27, No. 5. (October 1999), pp. 346-350.
    by S Takechi, M Yokoyama, N Tanji, S Nishio, N Araki
    posted to hyperplasia by mtagaya on 2008-04-08 10:01:12 as **
  • Relevance of anti-reactive oxygen species activity to anti-inflammatory activity of components of eviprostat, a phytotherapeutic agent for benign prostatic hyperplasia.
    Phytomedicine : international journal of phytotherapy and phytopharmacology, Vol. 14, No. 7-8. (August 2007), pp. 465-472.
    by M Oka, M Tachibana, K Noda, N Inoue, M Tanaka, K Kuwabara
    posted to hyperplasia by mtagaya on 2008-04-08 09:53:48 as **
  • Symptomatic and asymptomatic benign prostatic hyperplasia: molecular differentiation by using microarrays.
    Proceedings of the National Academy of Sciences of the United States of America, Vol. 99, No. 11. (28 May 2002), pp. 7598-7603.
    by K Prakash, G Pirozzi, M Elashoff, W Munger, I Waga, R Dhir, Y Kakehi, RH Getzenberg
    posted to hyperplasia microarray by mtagaya on 2008-04-08 09:52:37 as **
  • A systematic analysis of the effect of target RNA structure on RNA interference.
    Nucleic acids research, Vol. 35, No. 13. (2007), pp. 4322-4330.
    by EM Westerhout, B Berkhout
    posted to sirna target by mtagaya on 2008-04-03 02:51:47 as **
  • Effect of target secondary structure on RNAi efficiency
    RNA (7 August 2007), rna.546207.
    by Yu Shao, Chi Y Chan, Anil Maliyekkel, Charles E Lawrence, Igor B Roninson, Ye Ding
    posted to sirna target by mtagaya on 2008-04-03 02:51:10 as ** along with 3 people fengqian Hosna ilh
  • Impact of target mRNA structure on siRNA silencing efficiency: A large-scale study.
    Biotechnology and bioengineering (1 February 2008)
    by Joseph A A Gredell, Angela K K Berger, S Patrick P Walton
    posted to sirna target by mtagaya on 2008-04-03 02:50:44 as **
  • Crystal structures of the ribonuclease MC1 from bitter gourd seeds, complexed with 2'-UMP or 3'-UMP, reveal structural basis for uridine specificity.
    Biochem Biophys Res Commun, Vol. 275, No. 2. (28 August 2000), pp. 572-576.
    by A Suzuki, M Yao, I Tanaka, T Numata, S Kikukawa, N Yamasaki, M Kimura
    posted to ribonuclease structure by mtagaya on 2008-03-25 02:49:39 as **
  • RNAi and RNAa - The Yin and Yang of RNAome.
    Bioinformation, Vol. 2, No. 6. (2008), pp. 235-237.
    by PN Pushparaj, JJ Aarthi, SD Kumar, J Manikandan
    posted to rnaa rnai by mtagaya on 2008-03-18 02:57:10 as ** along with 1 person yoonk
  • The Effect of Central Loops in miRNA:MRE Duplexes on the Efficiency of miRNA-Mediated Gene Regulation.
    PLoS ONE, Vol. 3, No. 3. (2008)
    by W Ye, Q Lv, CK Wong, S Hu, C Fu, Z Hua, G Cai, G Li, BB Yang, Y Zhang
    posted to mirna by mtagaya on 2008-03-18 02:57:01 as ** along with 1 person and 1 group heliopais microRNA
  • Knockdown of TNFR1 by the sense strand of an ICAM-1 siRNA: dissection of an off-target effect.
    Nucleic Acids Res (20 December 2007)
    by Paul R R Clark, Jordan S S Pober, Martin S S Kluger
    posted to off-target rnai by mtagaya on 2008-02-29 05:43:56 as ** along with 1 person YamaPing
  • siRNA target site secondary structure predictions using local stable substructures.
    Nucleic Acids Res, Vol. 33, No. 3. (2005)
    by BS Heale, HS Soifer, C Bowers, JJ Rossi
    posted to sirna structure target by mtagaya on 2008-02-26 08:47:43 as ** along with 1 person tardigrade
  • Local RNA target structure influences siRNA efficacy: systematic analysis of intentionally designed binding regions.
    J Mol Biol, Vol. 348, No. 4. (13 May 2005), pp. 883-893.
    by S Schubert, A Grünweller, VA Erdmann, J Kurreck
    posted to bioinformatics prediction sirna target by mtagaya on 2008-02-25 01:44:39 as **
  • Predicting RNA folding thermodynamics with a reduced chain representation model.
    RNA, Vol. 11, No. 12. (December 2005), pp. 1884-1897.
    by S Cao, SJ Chen
    posted to rna structure by mtagaya on 2008-02-20 07:13:15 as ** along with 1 person physics
  • Free energy landscapes of RNA/RNA complexes: with applications to snRNA complexes in spliceosomes.
    J Mol Biol, Vol. 357, No. 1. (17 March 2006), pp. 292-312.
    by S Cao, SJ Chen
    posted to rna structure by mtagaya on 2008-02-18 09:55:59 as ** along with 1 person physics
  • MicroRNA-373 induces expression of genes with complementary promoter sequences.
    Proc Natl Acad Sci U S A (28 January 2008)
    by Robert F F Place, Long-Cheng C Li, Deepa Pookot, Emily J J Noonan, Rajvir Dahiya
    posted to microrna by mtagaya on 2008-02-07 07:34:01 as ** along with 6 people and 1 group sebastien_vigneau epigenetics heliopais waszak Alexander_Kanitz maralena microRNA
  • Efficient siRNA selection using hybridization thermodynamics.
    Nucleic Acids Res, Vol. 36, No. 2. (February 2008), pp. 640-647.
    by ZJ Lu, DH Mathews
    posted to bioinformatics sirna by mtagaya on 2008-02-05 06:03:15 as ** along with 1 person jyuh
  • A fast structural multiple alignment method for long RNA sequences
    BMC Bioinformatics, Vol. 9 (23 January 2008), 33.
    by Yasuo Tabei, Hisanori Kiryu, Taishin Kin, Kiyoshi Asai
    posted to bioinformatics ncrna by mtagaya on 2008-01-28 06:37:55 as ** along with 1 person zwang
  • A probability-based approach for the analysis of large-scale RNAi screens
    Nature Methods, Vol. 4, No. 10. (09 September 2007), pp. 847-849.
    by Renate König, Chih-Yuan Chiang, Buu P Tu, Frank S Yan, Paul D Dejesus, Angelica Romero, Tobias Bergauer, Anthony Orth, Ute Krueger, Yingyao Zhou, Sumit K Chanda
    posted to off-target sirna by mtagaya on 2008-01-22 02:57:59 as ** along with 1 person jyuh
  • Epigenetic silencing of tumour suppressor gene p15 by its antisense RNA
    Nature, Vol. 451, No. 7175., pp. 202-206.
    by Wenqiang Yu, David Gius, Patrick Onyango, Kristi Muldoon-Jacobs, Judith Karp, Andrew P Feinberg, Hengmi Cui
    posted to rna by mtagaya on 2008-01-11 00:06:40 as ** along with 3 people KristiMuldoonJacobs dchughes Alexander_Kanitz
  • RNA-mediated epigenetic programming of a genome-rearrangement pathway
    Nature (28 November 2007)
    by Mariusz Nowacki, Vikram Vijayan, Yi Zhou, Klaas Schotanus, Thomas G Doak, Laura F Landweber
    posted to rna by mtagaya on 2008-01-11 00:05:45 as ** along with 6 people balicea sebastien_vigneau margaritis zwang rebeccamancy rschulz
  • Endogenous human microRNAs that suppress breast cancer metastasis
    Nature, Vol. 451, No. 7175., pp. 147-152.
    by Sohail F Tavazoie, Claudio Alarcón, Thordur Oskarsson, David Padua, Qiongqing Wang, Paula D Bos, William L Gerald, Joan Massagué
    posted to rna by mtagaya on 2008-01-11 00:05:30 as ** along with 2 people jfr lp2
  • Molecular biology: RNA rules
    Nature, Vol. 451, No. 7175. (09 January 2008), pp. 131-132.
    by Meng-Chao Yao
    posted to rna by mtagaya on 2008-01-11 00:05:12 as ** along with 3 people and 1 group sebastien_vigneau dbikard rebeccamancy Centre de Recherches Interdisciplinaires
  • Toxicogenomics of non-viral drug delivery systems for RNAi: potential impact on siRNA-mediated gene silencing activity and specificity.
    Adv Drug Deliv Rev, Vol. 59, No. 2-3. (30 March 2007), pp. 164-182.
    by S Akhtar, I Benter
    posted to rnai sirna by mtagaya on 2008-01-07 08:27:32 as ** along with 1 person jyuh
  • Advances in MicroRNAs: Implications for Gene Therapists.
    Hum Gene Ther (19 December 2007)
    by Rebecca T T Marquez, Anton P P McCaffrey
    posted to microrna off-target rnai by mtagaya on 2008-01-07 08:24:52 as ** along with 1 person dchughes
  • The role of site accessibility in microRNA target recognition
    Nat Genet, Vol. 39, No. 10. (October 2007), pp. 1278-1284.
    by Michael Kertesz, Nicola Iovino, Ulrich Unnerstall, Ulrike Gaul, Eran Segal
    posted to microrna prediction target by mtagaya on 2007-12-13 06:20:33 as ** along with 13 people and 1 group rdiaz Hosna djkt Garamonfok physics bootsy epigenetics lp2 cabbagezs heliopais uwe yavanna maralena microRNA
  • Structural Basis for Double-Stranded RNA Processing by Dicer
    Science, Vol. 311, No. 5758. (13 January 2006), pp. 195-198.
    by Ian J Macrae, Kaihong Zhou, Fei Li, Adrian Repic, Angela N Brooks, Zacheus W Cande, Paul D Adams, Jennifer A Doudna
    posted to sirna by mtagaya on 2007-11-22 04:36:40 as ** along with 4 people and 2 groups shuns dayjm marcius yavanna BioinfoCIPF SGU-CIPF
  • miRRim: A novel system to find conserved miRNAs with high sensitivity and specificity.
    RNA (24 October 2007)
    by Goro Terai, Takashi Komori, Kiyoshi Asai, Taishin Kin
    posted to bioinformatics mirna by mtagaya on 2007-11-05 07:26:18 as **
  • Robust Machine Learning Algorithms Predict MicroRNA Genes and Targets.
    Methods Enzymol, Vol. 427C (2007), pp. 25-49.
    by Pål Sætrom, Ola Snøve
    posted to bioinformatics microrna prediction target by mtagaya on 2007-11-02 04:57:55 as ** along with 1 person and 1 group andersbj microRNA
  • Naive Bayes for MicroRNA Target Predictions Machine Learning for MicroRNA Targets.
    Bioinformatics (8 October 2007)
    by Malik Yousef, Segun Jung, Andrew V V Kossenkov, Louise C C Showe, Michael K K Showe
    posted to bioinformatics microrna prediction target by mtagaya on 2007-11-02 04:55:53 as ** along with 4 people and 1 group ealloza cabbagezs heliopais maralena microRNA
  • Human microRNA prediction through a probabilistic co-learning model of sequence and structure.
    Nucleic Acids Res, Vol. 33, No. 11. (2005), pp. 3570-3581.
    by JW Nam, KR Shin, J Han, Y Lee, VN Kim, BT Zhang
    posted to bioinformatics microrna by mtagaya on 2007-11-01 08:57:46 as read
  • Comparison of approaches for rational siRNA design leading to a new efficient and transparent method.
    Nucleic Acids Res (10 April 2007)
    by Olga Matveeva, Yury Nechipurenko, Leo Rossi, Barry Moore, Pål Sætrom, Aleksey Y Y Ogurtsov, John F F Atkins, Svetlana A A Shabalina
    posted to bioinformatics sirna by mtagaya on 2007-10-30 06:24:15 as ** along with 2 people jyuh tardigrade
  • Expression of a novel non-coding mitochondrial RNA in human proliferating cells.
    Nucleic Acids Res (25 October 2007)
    by Jaime Villegas, Veronica Burzio, Claudio Villota, Eduardo Landerer, Ronny Martinez, Marcela Santander, Rodrigo Martinez, Rodrigo Pinto, María I I Vera, Enrique Boccardo, Luisa L L Villa, Luis O O Burzio
    posted to ncrna by mtagaya on 2007-10-29 04:31:01 as **
  • An RNA targeted to the HIV-1 LTR promoter modulates indiscriminate off-target gene activation
    Nucl. Acids Res. (24 October 2007), gkm847.
    by Marc S Weinberg, Samantha Barichievy, Lana Schaffer, Jiang Han, Kevin V Morris
    posted to hiv off-target rna by mtagaya on 2007-10-26 01:34:56 as **
  • Thermodynamic instability of siRNA duplex is a prerequisite for dependable prediction of siRNA activities
    Nucl. Acids Res., Vol. 35, No. 18. (25 September 2007), e123.
    by Masatoshi Ichihara, Yoshiki Murakumo, Akio Masuda, Toru Matsuura, Naoya Asai, Mayumi Jijiwa, Maki Ishida, Jun Shinmi, Hiroshi Yatsuya, Shanlou Qiao, Masahide Takahashi, Kinji Ohno
    posted to sirna by mtagaya on 2007-10-26 01:17:31 as **
  • Distance constraints between microRNA target sites dictate efficacy and cooperativity.
    Nucleic Acids Res (27 March 2007)
    by Pål Sætrom, Bret S E S Heale, Ola Snøve, Lars Aagaard, Jessica Alluin, John J J Rossi
    posted to microrna off-target sirna by mtagaya on 2007-10-25 07:46:19 as ** along with 2 people and 1 group tardigrade andersbj microRNA
  • Fast Pairwise Structural RNA Alignments by Pruning of the Dynamical Programming Matrix.
    PLoS Comput Biol, Vol. 3, No. 10. (12 October 2007)
    by Jakob H H Havgaard, Elfar Torarinsson, Jan Gorodkin
    posted to bioinformatics ncrna by mtagaya on 2007-10-25 01:42:12 as ** along with 2 people fabsta elfar
  • Systematic identification of non-coding RNA 2,2,7-trimethylguanosine cap structures in Caenorhabditis elegans
    BMC Molecular Biology, Vol. 8 (29 September 2007), 86.
    by Dong Jia, Lun Cai, Housheng He, Geir Skogerbo, Tiantian Li, Muhammad N Aftab, Runsheng Chen
    posted to ncrna by mtagaya on 2007-10-03 00:24:05 as **
  • Let-7 microRNA-mediated mRNA deadenylation and translational repression in a mammalian cell-free system.
    Genes Dev, Vol. 21, No. 15. (1 August 2007), pp. 1857-1862.
    by M Wakiyama, K Takimoto, O Ohara, S Yokoyama
    posted to mirna by mtagaya on 2007-09-25 03:05:57 as ** along with 1 person and 1 group andersbj microRNA
  • More complete gene silencing by fewer siRNAs: transparent optimized design and biophysical signature
    Nucl. Acids Res., Vol. 35, No. 2. (28 January 2007), pp. 433-440.
    by Istvan Ladunga
    posted to bioinformatics sirna by mtagaya on 2007-09-21 01:57:28 as ** along with 1 person cthachuk
  • Novel insights into RNAi off-target effects using C. elegans paralogs
    BMC Genomics, Vol. 8 (19 April 2007), 106.
    by Jean-Francois Rual, Niels Klitgord, Guillaume Achaz
    posted to bioinformatics off-target sirna by mtagaya on 2007-09-21 01:56:29 as ** along with 1 person jyuh
  • Combinatorial RNAi for quantitative protein network analysis.
    Proc Natl Acad Sci U S A, Vol. 104, No. 16. (17 April 2007), pp. 6579-6584.
    by O Sahin, C Löbke, U Korf, H Appelhans, H Sültmann, A Poustka, S Wiemann, D Arlt
    posted to bioinformatics sirna by mtagaya on 2007-09-21 01:56:03 as ** along with 1 person jyuh
  • Genome-wide identification of specific oligonucleotides using artificial neural network and computational genomic analysis
    BMC Bioinformatics, Vol. 8 (22 May 2007), 164.
    by Chun-Chi Liu, Chin-Chung Lin, Ker-Chau Li, Wen-Shyen E Chen, Jiun-Ching Chen, Ming-Te Yang, Pan-Chyr Yang, Pei-Chun Chang, Jeremy JW Chen
    posted to bioinformatics sirna by mtagaya on 2007-09-21 01:55:03 as **
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