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mtagaya rnai [33 articles]

Recent papers added to mtagaya library classified by the tag rnai. You can also see everyone's rnai.
  • Position-specific chemical modification of siRNAs reduces "off-target" transcript silencing.
    RNA (8 May 2006)
    by Aimee L L Jackson, Julja Burchard, Devin Leake, Angela Reynolds, Janell Schelter, Jie Guo, Jason M M Johnson, Lee Lim, Jon Karpilow, Kim Nichols, William Marshall, Anastasia Khvorova, Peter S S Linsley
    posted to rnai off-target by mtagaya on 2008-05-01 09:05:08 as ** along with 2 people tardigrade lhonigberg
  • RNAi and RNAa - The Yin and Yang of RNAome.
    Bioinformation, Vol. 2, No. 6. (2008), pp. 235-237.
    by PN Pushparaj, JJ Aarthi, SD Kumar, J Manikandan
    posted to rnaa rnai by mtagaya on 2008-03-18 02:57:10 as ** along with 1 person yoonk
  • Knockdown of TNFR1 by the sense strand of an ICAM-1 siRNA: dissection of an off-target effect.
    Nucleic Acids Res (20 December 2007)
    by Paul R R Clark, Jordan S S Pober, Martin S S Kluger
    posted to off-target rnai by mtagaya on 2008-02-29 05:43:56 as ** along with 1 person YamaPing
  • Toxicogenomics of non-viral drug delivery systems for RNAi: potential impact on siRNA-mediated gene silencing activity and specificity.
    Adv Drug Deliv Rev, Vol. 59, No. 2-3. (30 March 2007), pp. 164-182.
    by S Akhtar, I Benter
    posted to rnai sirna by mtagaya on 2008-01-07 08:27:32 as ** along with 1 person jyuh
  • Advances in MicroRNAs: Implications for Gene Therapists.
    Hum Gene Ther (19 December 2007)
    by Rebecca T T Marquez, Anton P P McCaffrey
    posted to microrna off-target rnai by mtagaya on 2008-01-07 08:24:52 as ** along with 1 person dchughes
  • Guidelines for the selection of highly effective siRNA sequences for mammalian and chick RNA interference.
    Nucleic Acids Res, Vol. 32, No. 3. (2004), pp. 936-948.
    by K Ui-Tei, Y Naito, F Takahashi, T Haraguchi, H Ohki-Hamazaki, A Juni, R Ueda, K Saigo
    posted to rnai by mtagaya on 2007-08-09 01:51:18 as **
  • Theoretical design of antisense RNA structures substantially improves annealing kinetics and efficacy in human cells.
    Nat Biotechnol, Vol. 16, No. 1. (January 1998), pp. 64-68.
    by V Patzel, G Sczakiel
    posted to rna rnai by mtagaya on 2007-05-11 02:04:26 as **
  • Sfold web server for statistical folding and rational design of nucleic acids.
    Nucleic Acids Res, Vol. 32, No. Web Server issue. (1 July 2004)
    by Y Ding, CY Chan, CE Lawrence
    posted to bioinformatics rnai by mtagaya on 2007-05-10 10:20:52 as ** along with 3 people jyuh eckart_bindewald Hosna
  • siRNA Selection Server: an automated siRNA oligonucleotide prediction server.
    Nucleic Acids Res, Vol. 32, No. Web Server issue. (1 July 2004)
    by B Yuan, R Latek, M Hossbach, T Tuschl, F Lewitter
    posted to bioinformatics rnai by mtagaya on 2007-05-10 10:19:48 as ** along with 1 person jyuh
  • Selecting effective siRNAs based on guide RNA structure
    Nature Protocols, Vol. 1 (16 November 2006), pp. 1832-1839.
    by Christian Köberle1, Stefan HE Kaufmann1, Volker Patzel
    posted to bioinformatics rnai by mtagaya on 2007-05-10 10:06:37 as **
  • Short RNA duplexes produced by hydrolysis with Escherichia coli RNase III mediate effective RNA interference in mammalian cells.
    Proc Natl Acad Sci U S A, Vol. 99, No. 15. (23 July 2002), pp. 9942-9947.
    by D Yang, F Buchholz, Z Huang, A Goga, CY Chen, FM Brodsky, JM Bishop
    posted to rnai by mtagaya on 2007-05-10 09:57:21 as ** along with 1 person jyuh
  • A microRNA in a multiple-turnover RNAi enzyme complex.
    Science, Vol. 297, No. 5589. (20 September 2002), pp. 2056-2060.
    by G Hutvágner, PD Zamore
    posted to mirna off-target rnai by mtagaya on 2007-05-10 09:53:09 as ** along with 1 person ecattell
  • Argonaute-1 directs siRNA-mediated transcriptional gene silencing in human cells.
    Nat Struct Mol Biol (27 August 2006)
    by Daniel H H Kim, Louisa M M Villeneuve, Kevin V V Morris, John J J Rossi
    posted to rnai sirna by mtagaya on 2006-10-19 06:15:39 as ** along with 4 people sebastien_vigneau ttjoseph tardigrade elzodw
  • Involvement of AGO1 and AGO2 in mammalian transcriptional silencing
    Nature Structural & Molecular Biology, Vol. 13, No. 9. (27 August 2006), pp. 787-792.
    by Bethany A Janowski, Kenneth E Huffman, Jacob C Schwartz, Rosalyn Ram, Robert Nordsell, David S Shames, John D Minna, David R Corey
    posted to ncrna rnai by mtagaya on 2006-10-19 06:14:34 as ** along with 1 person tardigrade
  • L1 retrotransposition is suppressed by endogenously encoded small interfering RNAs in human cultured cells.
    Nat Struct Mol Biol (27 August 2006)
    by Nuo Yang, Haig H H Kazazian
    posted to retrotransposition rnai by mtagaya on 2006-10-19 06:13:37 as ** along with 1 person and 2 groups dchughes G4ID Genetics-of-Gambling
  • Small interfering RNAs to the rescue: blocking L1 retrotransposition
    Nature Structural & Molecular Biology, Vol. 13, No. 9., pp. 758-759.
    by Harris S Soifer, John J Rossi
    posted to retrotransposition rnai by mtagaya on 2006-10-19 06:12:52 as ** along with 2 people and 2 groups tardigrade dchughes G4ID Genetics-of-Gambling
  • siRNAs can function as miRNAs.
    Genes Dev, Vol. 17, No. 4. (15 February 2003), pp. 438-442.
    by JG Doench, CP Petersen, PA Sharp
    posted to microrna ncrna off-target rnai by mtagaya on 2006-10-16 06:04:28 as ** along with 2 people evaf tardigrade
  • Potent and specific genetic interference by double-stranded RNA in Caenorhabditis elegans.
    Nature, Vol. 391, No. 6669. (19 February 1998), pp. 806-811.
    by A Fire, S Xu, MK Montgomery, SA Kostas, SE Driver, CC Mello
    posted to rnai by mtagaya on 2006-10-06 02:58:54 as ** along with 6 people and 1 group dayjm tardigrade raylim shizhao benlin elfar Wikipedia
  • Identification and characterization of small RNAs involved in RNA silencing
    FEBS Letters, Vol. 579, No. 26. (31 October 2005), pp. 5830-5840.
    by Alexei Aravin, Thomas Tuschl
    posted to ncrna rnai by mtagaya on 2006-10-02 08:06:35 as ** along with 2 people and 1 group taenneken cdawson GIG
  • Prevalence of off-target effects in Drosophila RNA interference screens
    Nature (10 September 2006)
    by Yong Ma, Adrian Creanga, Lawrence Lum, Philip A Beachy
    posted to off-target rnai by mtagaya on 2006-09-25 08:15:33 as ** along with 1 person lhonigberg
  • Dicer-2 and R2D2 coordinately bind siRNA to promote assembly of the siRISC complexes.
    RNA (14 June 2006)
    by Xiang Liu, Feng Jiang, Savitha Kalidas, Dean Smith, Qinghua Liu
    posted to dicer risc rnai sirna by mtagaya on 2006-08-18 02:53:12 as ** along with 1 person tardigrade
  • Cell type–specific delivery of siRNAs with aptamer-siRNA chimeras
    Nature Biotechnology, Vol. 24, No. 8. (25 June 2006), pp. 1005-1015.
    by James O Mcnamara, Eran R Andrechek, Yong Wang, Kristi D Viles, Rachel E Rempel, Eli Gilboa, Bruce A Sullenger, Paloma H Giangrande
    posted to delivery rnai sirna by mtagaya on 2006-08-18 02:52:04 as ** along with 3 people jyuh tardigrade mgantier
  • Small RNAs with imperfect match to endogenous mRNA repress translation. Implications for off-target activity of small inhibitory RNA in mammalian cells.
    J Biol Chem, Vol. 278, No. 45. (7 November 2003), pp. 44312-44319.
    by S Saxena, ZO Jónsson, A Dutta
    posted to off-target rnai sirna by mtagaya on 2006-07-11 10:23:31 as ** along with 1 person chenlc03
  • Mismatched siRNAs downregulate mRNAs as a function of target site location.
    FEBS Lett (5 June 2006)
    by Scott E E Martin, Natasha J J Caplen
    posted to microrna ncrna off-target rnai sirna by mtagaya on 2006-07-11 06:09:05 as read along with 2 people and 1 group tardigrade andersbj microRNA
  • Polycistronic RNA polymerase II expression vectors for RNA interference based on BIC/miR-155.
    Nucleic Acids Res, Vol. 34, No. 7. (2006)
    by KH Chung, CC Hart, S Al-Bassam, A Avery, J Taylor, PD Patel, AB Vojtek, DL Turner
    posted to microrna ncrna rnai transcription by mtagaya on 2006-07-06 10:30:38 as ** along with 1 person j_rodriguez
  • Artificial control of gene expression in mammalian cells by modulating RNA interference through aptamer-small molecule interaction.
    RNA, Vol. 12, No. 5. (May 2006), pp. 710-716.
    by CI An, VB Trinh, Y Yokobayashi
    posted to rnai sirna by mtagaya on 2006-06-09 02:28:00 as ** along with 1 person jyuh
  • A computational study of off-target effects of RNA interference.
    Nucleic Acids Res, Vol. 33, No. 6. (2005), pp. 1834-1847.
    by S Qiu, CM Adema, T Lane
    posted to bioinformatics off-target rnai by mtagaya on 2006-05-11 07:44:45 as **
  • notes Widespread siRNA "off-target" transcript silencing mediated by seed region sequence complementarity.
    RNA (8 May 2006)
    by Aimee L L Jackson, Julja Burchard, Janell Schelter, B Nelson N Chau, Michele Cleary, Lee Lim, Peter S S Linsley
    posted to off-target rnai by mtagaya on 2006-05-11 07:29:29 as read along with 3 people ttjoseph tardigrade lhonigberg
  • Off-target effects by siRNA can induce toxic phenotype.
    RNA (8 May 2006)
    by Yuriy Fedorov, Emily M M Anderson, Amanda Birmingham, Angela Reynolds, Jon Karpilow, Kathryn Robinson, Devin Leake, William S S Marshall, Anastasia Khvorova
    posted to off-target rnai by mtagaya on 2006-05-11 07:28:27 as ** along with 2 people tardigrade lhonigberg
  • Many commonly used siRNAs risk off-target activity.
    Biochem Biophys Res Commun, Vol. 319, No. 1. (18 June 2004), pp. 256-263.
    by O Snøve, T Holen
    posted to bioinformatics off-target rnai by mtagaya on 2006-05-11 07:23:23 as **
  • Accelerated off-target search algorithm for siRNA.
    Bioinformatics, Vol. 21, No. 8. (15 April 2005), pp. 1316-1324.
    by T Yamada, S Morishita
    posted to bioinformatics off-target rnai by mtagaya on 2006-05-11 07:22:39 as **
  • siRNA-mediated off-target gene silencing triggered by a 7 nt complementation.
    Nucleic Acids Res, Vol. 33, No. 14. (2005), pp. 4527-4535.
    by X Lin, X Ruan, MG Anderson, JA McDowell, PE Kroeger, SW Fesik, Y Shen
    posted to off-target rnai by mtagaya on 2006-04-19 09:25:49 as **
  • 3′ UTR seed matches, but not overall identity, are associated with RNAi off-targets
    Nature Methods, Vol. 3, No. 3. (17 February 2006), pp. 199-204.
    by Amanda Birmingham, Emily M Anderson, Angela Reynolds, Diane Ilsley-Tyree, Devin Leake, Yuriy Fedorov, Scott Baskerville, Elena Maksimova, Kathryn Robinson, Jon Karpilow, William S Marshall, Anastasia Khvorova
    posted to off-target rnai by mtagaya on 2006-04-19 09:24:53 as **
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