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neils alignment [13 articles]

Recent papers added to neils library classified by the tag alignment. You can also see everyone's alignment.
  • PROMALS3D web server for accurate multiple protein sequence and structure alignments
    Nucl. Acids Res. (24 May 2008), gkn322.
    by Jimin Pei, Ming Tang, Nick V Grishin
    posted to webserver structure sequence protein bioinformatics alignment by neils on 2008-05-29 04:29:21 as **
  • RIO1, an extraordinary novel protein kinase.
    FEBS Lett, Vol. 524, No. 1-3. (31 July 2002), pp. 31-36.
    by M Angermayr, W Bandlow
    posted to domain alignment kinase rio by neils on 2008-01-04 07:05:31 as **
  • PPSP: prediction of PK-specific phosphorylation site with Bayesian decision theory.
    BMC Bioinformatics, Vol. 7 (2006)
    by Yu Xue, Ao Li, Lirong Wang, Huanqing Feng, Xuebiao Yao
    posted to kinase amino-acid alignment analysis article-nar article-predikin bayes binding data molecular phosphorylation protein sequence sites software theorem by neils on 2007-12-04 03:22:14 as **
  • SMART 5: domains in the context of genomes and networks.
    Nucleic Acids Res, Vol. 34, No. Database issue. (Jan 2006), pp. D257-D260.
    by Ivica Letunic, Richard R Copley, Birgit Pils, Stefan Pinkert, Jörg Schultz, Peer Bork
    posted to complex database alignment analysis article-nar article-pka-pkg article-predikin biological catalysis catalytic domain genomics interface internet models multiprotein protein sequence structure tertiary user-computer by neils on 2007-12-04 03:22:13 as **
  • Structural modes of stabilization of permissive phosphorylation sites in protein kinases: distinct strategies in Ser/Thr and Tyr kinases.
    J Mol Biol, Vol. 339, No. 5. (Jun 2004), pp. 1025-1039.
    by A Krupa, G Preethi, N Srinivasan
    posted to kinase amino-acid activation adenosine alignment article-predikin catalytic data domain enzyme models molecular phosphorylation protein protein-serine-threonine protein-tyrosine sequence signal structure tertiary transduction triphosphate by neils on 2007-12-04 03:22:13 as **
  • Prediction of phosphorylation sites using SVMs.
    Bioinformatics, Vol. 20, No. 17. (Nov 2004), pp. 3179-3184.
    by Jong H Kim, Juyoung Lee, Bermseok Oh, Kuchan Kimm, Insong Koh
    posted to phosphotransferase algorithm alignment analysis article-predikin artificial binding chemical computer intelligence models molecular phosphorylation protein relationship sequence simulation sites structure-activity by neils on 2007-12-04 03:22:13 as **
  • BRSK2 is activated by cyclic AMP-dependent protein kinase A through phosphorylation at Thr260.
    Biochem Biophys Res Commun, Vol. 347, No. 4. (Sep 2006), pp. 867-871.
    by Zekun Guo, Wenwen Tang, Jian Yuan, Xinya Chen, Bo Wan, Xiuting Gu, Kuntian Luo, Yingli Wang, Long Yu
    posted to kinase amino-acid activation alignment amp-dependent article-predikin cyclic data enzyme molecular phosphorylation protein protein-serine-threonine sequence threonine by neils on 2007-12-04 03:22:12 as **
  • Pfam: clans, web tools and services.
    Nucleic Acids Res, Vol. 34, No. Database issue. (Jan 2006), pp. D247-D251.
    by Robert D Finn, Jaina Mistry, Benjamin S Böckler, Sam G Jones, Volker Hollich, Timo Lassmann, Simon Moxon, Mhairi Marshall, Ajay Khanna, Richard Durbin, Sean R Eddy, Erik LL Sonnhammer, Alex Bateman
    posted to chain database alignment article-predikin computer graphics interface internet markov protein sequence software structure tertiary user-computer by neils on 2007-12-04 03:22:12 as **
  • Profile hidden Markov models.
    Bioinformatics, Vol. 14, No. 9. (1998), pp. 755-763.
    by SR Eddy
    posted to chain alignment article-nar article-predikin hmm library markov peptide sequence software by neils on 2007-12-04 03:22:12 as **
  • A kinase sequence database: sequence alignments and family assignment.
    Bioinformatics, Vol. 18, No. 9. (Sep 2002), pp. 1274-1275.
    by Oleksandr Buzko, Kevan M Shokat
    posted to system kinase alignment analysis article-predikin cluster database homology information internet management protein retrieval sequence storage by neils on 2007-12-04 03:22:12 as **
  • Protein kinases associated with the yeast phosphoproteome.
    BMC Bioinformatics, Vol. 7 (2006)
    by Ross I Brinkworth, Alan L Munn, Bostjan Kobe
    posted to phosphoprotein fungi kinase amino-acid alignment analysis article-predikin cerevisiae data interaction mapping molecular phosphorylation protein proteome saccharomyces sequence specificity substrate by neils on 2007-12-04 03:22:12 as **
  • Scoring of predicted GRK2 phosphorylation sites in Nedd4-2.
    Bioinformatics, Vol. 22, No. 18. (Sep 2006), pp. 2192-2195.
    by Jonathan W Arthur, Angeles S Perez, David I Cook
    posted to algorithm amino-acid alignment analysis article-predikin artificial beta-adrenergic binding chemical computer data g-protein-coupled homology intelligence interaction kinase ligases mapping models molecular phosphorylation protein receptor sequence simulation sites ubiquitin-protein by neils on 2007-12-04 03:22:11 as **
  • Proteomic and computational analysis of secreted proteins with type I signal peptides from the Antarctic archaeon Methanococcoides burtonii.
    J Proteome Res, Vol. 5, No. 9. (Sep 2006), pp. 2457-2464.
    by Neil FW Saunders, Charmaine Ng, Mark Raftery, Michael Guilhaus, Amber Goodchild, Ricardo Cavicchioli
    posted to archaea signal region amino-acid mass-spec alignment analysis antarctic bibtex-import biology chromatography compounds computational data liquid methanosarcinaceae molecular organophosphorus protein proteomics sequence sorting by neils on 2007-11-23 05:17:31 as **
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