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neils phosphorylation [77 articles]

Recent papers added to neils library classified by the tag phosphorylation. You can also see everyone's phosphorylation.
  • Global analysis of protein phosphorylation in yeast
    Nature, Vol. 438, No. 7068., pp. 679-684.
    by Jason Ptacek, Geeta Devgan, Gregory Michaud, Heng Zhu, Xiaowei Zhu, Joseph Fasolo, Hong Guo, Ghil Jona, Ashton Breitkreutz, Richelle Sopko, Rhonda R Mccartney, Martin C Schmidt, Najma Rachidi, Soo-Jung Lee, Angie S Mah, Lihao Meng, Michael JR Stark, David F Stern, Claudio De Virgilio, Mike Tyers, Brenda Andrews, Mark Gerstein, Barry Schweitzer, Paul F Predki, Michael Snyder
    posted to yeast proteomics phosphorylation analysis by neils on 2008-07-12 13:04:47 as ** along with 6 people and 1 group carlk tmmurali tuck balabu nickluscombe koller EBI-regulation
  • Immunomodulatory Effects of Polar Lichens on the Function of Macrophages In Vitro.
    Marine biotechnology (New York, N.Y.) (9 July 2008)
    by Hye-Sook S Choi, Joung H Yim, Hong K Lee, Suhkneung Pyo
    posted to phosphorylation pathway macrophage lichen immunology antarctic by neils on 2008-07-11 00:20:06 as **
  • Non-functional phosphorylations?
    Trends in Biochemical Sciences, Vol. In Press, Corrected Proof
    by Gustav E Lienhard
    posted to specificity phosphorylation hypothesis evolution by neils on 2008-07-06 07:44:14 as ** along with 1 person brianb
  • Serine/threonine kinase (pk-1) is a component of Autographa californica multiple nucleopolyhedrovirus (AcMNPV) very late gene transcription complex and it phosphorylates a 102kDa polypeptide of the complex.
    Virus research (21 June 2008)
    by Gourav Mishra, Pooja Chadha, Rakha H H Das
    posted to complex virus phosphorylation kinase autographa by neils on 2008-06-27 00:37:33 as **
  • Phosphorylation-Specific MS/MS Scoring for Rapid and Accurate Phosphoproteome Analysis
    J. Proteome Res. (19 June 2008)
    by Samuel H Payne, Margaret Yau, Marcus B Smolka, Stephen Tanner, Huilin Zhou, Vineet Bafna
    posted to phosphoprotein scoring proteome phosphorylation ms-ms bioinformatics by neils on 2008-06-19 09:14:49 as ** along with 1 person brianb
  • Global Impact of Oncogenic Src on a Phosphotyrosine Proteome
    J. Proteome Res. (19 June 2008)
    by Weifeng Luo, Robbert J Slebos, Salisha Hill, Ming Li, Jan Brábek, Ramars Amanchy, Raghothama Chaerkady, Akhilesh Pandey, Amy-Joan L Ham, Steven K Hanks
    posted to tyrosine src proteomics phosphorylation oncogene by neils on 2008-06-19 09:13:38 as **
  • Phosphorylation of Protein Phosphatase 2Cζ by c-Jun NH2-Terminal Kinase at Ser92 Attenuates Its Phosphatase Activity
    Biochemistry (14 June 2008)
    by Kenjiro Awano, Kazutaka Amano, Yuko Nagaura, Shin-Ichiro Kanno, Seishi Echigo, Shinri Tamura, Takayasu Kobayashi
    posted to phosphatase phosphorylation c-jun activity by neils on 2008-06-14 07:29:38 as **
  • PhosphoScan: A Probability-Based Method for Phosphorylation Site Prediction Using MS2/MS3 Pair Information
    J. Proteome Res. (13 June 2008)
    by Yunhu Wan, Diane Cripps, Stefani Thomas, Patricia Campbell, Nicholas Ambulos, Ting Chen, Austin Yang
    posted to mass-spec probability prediction phosphorylation by neils on 2008-06-13 14:53:58 as **
  • PhosphoScore: An Open-Source Phosphorylation Site Assignment Tool for MSn Data
    J. Proteome Res. (11 June 2008)
    by Brian E Ruttenberg, Trairak Pisitkun, Mark A Knepper, Jason D Hoffert
    posted to mass-spec software phosphorylation opensource analysis by neils on 2008-06-11 13:05:16 as ** along with 2 people woaizuqiu brianb
  • AMPK phosphorylation of raptor mediates a metabolic checkpoint.
    Molecular cell, Vol. 30, No. 2. (25 April 2008), pp. 214-226.
    by DM Gwinn, DB Shackelford, DF Egan, MM Mihaylova, A Mery, DS Vasquez, BE Turk, RJ Shaw
    posted to raptor phosphorylation kinase checkpoint amp-dependent by neils on 2008-06-05 00:45:34 as **
  • Statistics of cellular signal transduction as a race to the nucleus by multiple random walkers in compartment/phosphorylation space
    Proceedings of the National Academy of Sciences, Vol. 103, No. 45. (7 November 2006), pp. 16752-16757.
    by Ting Lu, Tongye Shen, Chenghang Zong, Jeff Hasty, Peter G Wolynes
    posted to statistics transduction signal scl phosphorylation analysis by neils on 2008-05-28 01:07:14 as ** along with 1 person brianb
  • Fibroblast growth factor receptor 2 phosphorylation on serine 779 couples to 14-3-3 and regulates cell survival and proliferation.
    Molecular and cellular biology, Vol. 28, No. 10. (May 2008), pp. 3372-3385.
    by A Lonic, EF Barry, C Quach, B Kobe, N Saunders, MA Guthridge
    posted to phosphorylation fibroblast fgfr 14-3-3 by neils on 2008-05-11 10:06:01 as **
  • Phosphorylation of Retinoblastoma Protein by Viral Protein with Cyclin-Dependent Kinase Function
    Science, Vol. 320, No. 5877. (9 May 2008), pp. 797-799.
    by Adam J Hume, Jonathan S Finkel, Jeremy P Kamil, Donald M Coen, Michael R Culbertson, Robert F Kalejta
    posted to virus retinoblastoma phosphorylation kinase cyclin-dependent by neils on 2008-05-09 00:33:27 as ** along with 3 people Petersarkies mclarenv biomcgary
  • Large-scale phosphorylation mapping reveals the extent of tyrosine phosphorylation in Arabidopsis
    Mol Syst Biol, Vol. 4 (6 May 2008)
    by Naoyuki Sugiyama, Hirofumi Nakagami, Keiichi Mochida, Arsalan Daudi, Masaru Tomita, Ken Shirasu, Yasushi Ishihama
    posted to mass-spec tyrosine proteomics phosphorylation arabidopsis by neils on 2008-05-06 23:39:40 as ** along with 3 people Ema kengg zwang
  • NetworKIN: a resource for exploring cellular phosphorylation networks
    Nucl. Acids Res., Vol. 36 (2008), pp. D695-699.
    by Rune Linding, Lars J Jensen, Adrian Pasculescu, Marina Olhovsky, Karen Colwill, Peer Bork, Michael B Yaffe, Tony Pawson
    posted to network transduction signal prediction phosphorylation bioinformatics by neils on 2008-04-24 16:22:01 as **
  • Scansite 2.0: Proteome-wide prediction of cell signaling interactions using short sequence motifs.
    Nucleic Acids Res, Vol. 31, No. 13. (1 July 2003), pp. 3635-3641.
    by JC Obenauer, LC Cantley, MB Yaffe
    posted to algorithm database amino-acid transduction structure software sites signal sequence proteome protein phosphorylation motifs internet binding article-predikin article-nar analysis by neils on 2008-04-24 16:16:06 as ** along with 2 people Evangelia mloewer
  • Site-Specific Phosphorylation Profiling of Arabidopsis Proteins by Mass Spectrometry and Peptide Chip Analysis
    J. Proteome Res. (24 April 2008)
    by Sergio de la Fuente van Bentem, Dorothea Anrather, Ilse Dohnal, Elisabeth Roitinger, Edina Csaszar, Jos Joore, Joshua Buijnink, Alessandro Carreri, Celine Forzani, Zdravko J Lorkovic, Andrea Barta, David Lecourieux, Andreas Verhounig, Claudia Jonak, Heribert Hirt
    posted to protein mass-spec plant phosphorylation peptide chip arabidopsis by neils on 2008-04-24 06:46:05 as ** along with 2 people brianb cjhall
  • Linear Discriminant Analysis-Based Estimation of the False Discovery Rate for Phosphopeptide Identifications
    J. Proteome Res. (19 April 2008)
    by Xiuxia Du, Feng Yang, Nathan P Manes, David L Stenoien, Matthew E Monroe, Joshua N Adkins, David J States, Samuel O Purvine, Ii Camp, Richard D Smith
    posted to statistics mass-spec analysis phosphopeptides phosphorylation proteomics by neils on 2008-04-19 07:51:23 as ** along with 2 people nedwards brianb
  • Global Changes in and Characterization of Specific Sites of Phosphorylation in Mouse and Human Histone H1 Isoforms upon CDK Inhibitor Treatment Using Mass Spectrometry
    J. Proteome Res. (17 April 2008)
    by Leesa J Deterding, Maureen K Bunger, Geoffrey C Banks, Kenneth B Tomer, Trevor K Archer
    posted to histone mass-spec cdk human inhibitor mouse phosphorylation by neils on 2008-04-17 06:32:57 as **
  • Identification of Phosphorylation Sites in Protein Kinase A Substrates Using Artificial Neural Networks and Mass Spectrometry
    J. Proteome Res., Vol. 3, No. 3. (14 June 2004), pp. 426-433.
    by M Hjerrild, A Stensballe, TE Rasmussen, CB Kofoed, N Blom, T Sicheritz-Ponten, MR Larsen, S Brunak, ON Jensen, S Gammeltoft
    posted to mass-spec article-predikin bioinformatics netphosk neural-network phosphorylation prediction by neils on 2008-04-16 04:05:30 as **
  • An online literature mining tool for protein phosphorylation.
    Bioinformatics (27 April 2006)
    by X Yuan, Z Z Z Hu, H T T Wu, M Torii, M Narayanaswamy, K E E Ravikumar, K Vijay-Shanker, C H H Wu
    posted to bioinformatics phosphorylation software text-mining webserver by neils on 2008-04-07 01:57:56 as ** along with 2 people and 2 groups irenas yas dbk-lab T_lab
  • Beyond the clause: extraction of phosphorylation information from medline abstracts.
    Bioinformatics, Vol. 21 Suppl 1 (1 June 2005)
    by M Narayanaswamy, KE Ravikumar, K Vijay-Shanker
    posted to bioinformatics medline phosphorylation text-mining by neils on 2008-04-07 01:51:53 as ** along with 3 people Enro miguel zlu
  • Meta-prediction of phosphorylation sites with weighted voting and restricted grid search parameter selection.
    Nucleic Acids Res, Vol. 36, No. 4. (March 2008)
    by J Wan, S Kang, C Tang, J Yan, Y Ren, J Liu, X Gao, A Banerjee, LB Ellis, T Li
    posted to bioinformatics meta-prediction phosphorylation prediction by neils on 2008-03-10 07:23:25 as **
  • Advances in the Analysis of Protein Phosphorylation
    J. Proteome Res. (8 March 2008)
    by Alberto Paradela, Juan P Albar
    posted to analysis methods phosphorylation proteomics review by neils on 2008-03-10 02:28:00 as ** along with 1 person jyuh
  • Phosphoproteome Analysis of Drosophila melanogaster Embryos
    J. Proteome Res. (8 March 2008)
    by Bo Zhai, Vill&#xe9, Judit, Sean A Beausoleil, Julian Mintseris, Steven P Gygi
    posted to phosphoprotein drosophila embryo phosphorylation proteomics by neils on 2008-03-10 02:26:33 as **
  • In situ observation of protein phosphorylation by high-resolution NMR spectroscopy
    Nature Structural & Molecular Biology, Vol. 15, No. 3. (24 February 2008), pp. 321-329.
    by Philipp Selenko, Dominique P Frueh, Simon J Elsaesser, Wilhelm Haas, Steven P Gygi, Gerhard Wagner
    posted to in-situ nmr phosphorylation spectroscopy xenopus by neils on 2008-03-06 23:27:25 as **
  • Online Automated in Vivo Zebrafish Phosphoproteomics: From Large-Scale Analysis Down to a Single Embryo
    J. Proteome Res. (29 February 2008)
    by Simone Lemeer, Martijn W Pinkse, Shabaz Mohammed, Bas van Breukelen, Jeroen den Hertog, Monique Slijper, Albert J Heck
    posted to mass-spec bioinformatics embryo phosphopeptides phosphorylation zebrafish by neils on 2008-02-29 06:47:33 as **
  • Activation segment dimerization: a mechanism for kinase autophosphorylation of non-consensus sites
    The EMBO Journal, Vol. aop, No. current. (31 January 2008)
    by Ashley CW Pike, Peter Rellos, Frank H Niesen, Andrew Turnbull, Antony W Oliver, Sirlester A Parker, Benjamin E Turk, Laurence H Pearl, Stefan Knapp
    posted to kinase activation dimerization phosphorylation substrate by neils on 2008-02-02 14:17:02 as **
  • Charging it up: global analysis of protein phosphorylation.
    Trends Genet (12 August 2006)
    by Jason Ptacek, Michael Snyder
    posted to kinase mass-spec global phosphorylation by neils on 2008-01-25 00:02:42 as ** along with 3 people carlk jyuh koller
  • Conformational Switching upon Phosphorylation: A Predictive Framework Based on Energy Landscape Principles
    Biochemistry (17 January 2008)
    by J Latzer, T Shen, PG Wolynes
    posted to energy phosphorylation prediction structure by neils on 2008-01-17 23:36:50 as ** along with 2 people and 1 group sobolevnrm paulschlesinger baker-group
  • Insulin receptor substrate 1 is phosphorylated by the serine kinase activity of phosphatidylinositol 3-kinase.
    Biochem J, Vol. 304 ( Pt 1) (15 November 1994), pp. 17-21.
    by JF Tanti, T Grémeaux, E Van Obberghen, Y Le Marchand-Brustel
    posted to irs kinase phosphorylation pi3k by neils on 2008-01-08 09:46:26 as **
  • PI 3-kinase is a dual specificity enzyme: autoregulation by an intrinsic protein-serine kinase activity.
    EMBO J, Vol. 13, No. 3. (1 February 1994), pp. 522-533.
    by R Dhand, I Hiles, G Panayotou, S Roche, MJ Fry, I Gout, NF Totty, O Truong, P Vicendo, K Yonezawa
    posted to kinase p110 p85 phosphorylation pi3k specificity by neils on 2008-01-08 09:43:23 as **
  • Activation loop sequences confer substrate specificity to phosphoinositide 3-kinase alpha (PI3Kalpha ). Functions of lipid kinase-deficient PI3Kalpha in signaling.
    J Biol Chem, Vol. 276, No. 24. (15 June 2001), pp. 21544-21554.
    by L Pirola, MJ Zvelebil, G Bulgarelli-Leva, E Van Obberghen, MD Waterfield, MP Wymann
    posted to kinase lipid p110 phosphorylation pi3k by neils on 2008-01-08 09:41:56 as **
  • Lipid kinase and protein kinase activities of G-protein-coupled phosphoinositide 3-kinase gamma: structure-activity analysis and interactions with wortmannin.
    Biochem J, Vol. 324 ( Pt 2) (1 June 1997), pp. 489-495.
    by S Stoyanova, G Bulgarelli-Leva, C Kirsch, T Hanck, R Klinger, R Wetzker, MP Wymann
    posted to kinase lipid phosphorylation pi3k by neils on 2008-01-08 09:32:38 as **
  • Comparison of the kinetic properties of the lipid- and protein-kinase activities of the p110alpha and p110beta catalytic subunits of class-Ia phosphoinositide 3-kinases.
    Biochem J, Vol. 350 Pt 2 (1 September 2000), pp. 353-359.
    by CA Beeton, EM Chance, LC Foukas, PR Shepherd
    posted to kinase p110 phosphorylation pi3k by neils on 2008-01-08 09:31:10 as **
  • Direct effects of caffeine and theophylline on p110 delta and other phosphoinositide 3-kinases. Differential effects on lipid kinase and protein kinase activities.
    J Biol Chem, Vol. 277, No. 40. (4 October 2002), pp. 37124-37130.
    by LC Foukas, N Daniele, C Ktori, KE Anderson, J Jensen, PR Shepherd
    posted to kinase p110 phosphorylation pi3k by neils on 2008-01-08 09:30:08 as **
  • Autophosphorylation of p110delta phosphoinositide 3-kinase: a new paradigm for the regulation of lipid kinases in vitro and in vivo.
    EMBO J, Vol. 18, No. 5. (1 March 1999), pp. 1292-1302.
    by B Vanhaesebroeck, K Higashi, C Raven, M Welham, S Anderson, P Brennan, SG Ward, MD Waterfield
    posted to kinase phosphorylation pi3k by neils on 2008-01-08 09:28:25 as **
  • Identification of two eukaryote-like serine/threonine kinases encoded by Chlamydia trachomatis serovar L2 and characterization of interacting partners of Pkn1.
    Infect Immun, Vol. 71, No. 10. (October 2003), pp. 5772-5784.
    by A Verma, AT Maurelli
    posted to kinase bacteria chlamydia phosphorylation pkn1 prokaryotic by neils on 2008-01-08 02:43:31 as **
  • Ser/Thr/Tyr protein phosphorylation in bacteria - for long time neglected, now well established.
    J Mol Microbiol Biotechnol, Vol. 9, No. 3-4. (2005), pp. 125-131.
    by J Deutscher, MH Saier
    posted to kinase bacteria phosphorylation by neils on 2008-01-07 03:40:22 as **
  • Fancy meeting you here! A fresh look at "prokaryotic" protein phosphorylation.
    J Bacteriol, Vol. 178, No. 16. (August 1996), pp. 4759-4764.
    by PJ Kennelly, M Potts
    posted to kinase phosphorylation prokaryotic by neils on 2008-01-07 03:39:16 as ** along with 1 person Ema
  • Autophosphorylation of Archaeoglobus fulgidus Rio2 and crystal structures of its nucleotide-metal ion complexes.
    FEBS J, Vol. 272, No. 11. (June 2005), pp. 2800-2810.
    by N LaRonde-LeBlanc, T Guszczynski, T Copeland, A Wlodawer
    posted to archaea kinase phosphorylation rio structure by neils on 2008-01-04 07:02:04 as **
  • PhosphoregDB: the tissue and sub-cellular distribution of mammalian protein kinases and phosphatases.
    BMC Bioinformatics, Vol. 7 (2006)
    by AR Forrest, DF Taylor, JL Fink, MM Gongora, C Flegg, RD Teasdale, H Suzuki, M Kanamori, C Kai, Y Hayashizaki, SM Grimmond
    posted to phosphatase kinase database phosphorylation by neils on 2007-12-04 12:31:16 as **
  • Protein kinase specificity. A strategic collaboration between kinase peptide specificity and substrate recruitment.
    Cell Cycle, Vol. 4, No. 1. (Jan 2005), pp. 52-56.
    by Guozhi Zhu, Yin Liu, Stephen Shaw
    posted to human kinase amino-acid activation article-predikin enzyme fragments interaction mapping peptide phosphorylation protein sequence signal specificity substrate transduction by neils on 2007-12-04 03:22:14 as **
  • GPS: a comprehensive www server for phosphorylation sites prediction.
    Nucleic Acids Res, Vol. 33, No. Web Server issue. (Jul 2005), pp. W184-W187.
    by Yu Xue, Fengfeng Zhou, Minjie Zhu, Kashif Ahmed, Guoliang Chen, Xuebiao Yao
    posted to phosphoprotein kinase analysis article-nar article-predikin internet microfilament phosphorylation protein sequence software specificity substrate tissue by neils on 2007-12-04 03:22:14 as **
  • PPSP: prediction of PK-specific phosphorylation site with Bayesian decision theory.
    BMC Bioinformatics, Vol. 7 (2006)
    by Yu Xue, Ao Li, Lirong Wang, Huanqing Feng, Xuebiao Yao
    posted to kinase amino-acid alignment analysis article-nar article-predikin bayes binding data molecular phosphorylation protein sequence sites software theorem by neils on 2007-12-04 03:22:14 as **
  • Calcium/calmodulin-dependent protein kinase II (CaMKII) localization acts in concert with substrate targeting to create spatial restriction for phosphorylation.
    J Biol Chem, Vol. 280, No. 10. (Mar 2005), pp. 9210-9216.
    by Jennifer Tsui, Masaki Inagaki, Howard Schulman
    posted to human article-predikin calcium-calmodulin-dependent cell chain fusion kinase kinetics line membrane microdomains phosphorylation polymerase protein reaction recombinant signal transduction transfection transport type by neils on 2007-12-04 03:22:14 as **
  • Phosphorylation of p90 ribosomal S6 kinase (RSK) regulates extracellular signal-regulated kinase docking and RSK activity.
    Mol Cell Biol, Vol. 23, No. 14. (Jul 2003), pp. 4796-4804.
    by Philippe P Roux, Stephanie A Richards, John Blenis
    posted to human cell amino-acid factors 90-kda article-predikin binding cultured data epidermal extracellular growth homology isoenzymes kinase matrix mitogen-activated mitogens molecular mutation phosphorylation protein ribosomal s6 sequence serine signal sites structure tertiary transduction by neils on 2007-12-04 03:22:14 as **
  • A dimeric kinase assembly underlying autophosphorylation in the p21 activated kinases.
    J Mol Biol, Vol. 361, No. 2. (Aug 2006), pp. 312-326.
    by Michelle Pirruccello, Holger Sondermann, Jeffrey G Pelton, Patricia Pellicena, André Hoelz, Jonathan Chernoff, David E Wemmer, John Kuriyan
    posted to human kinase amino-acid activation article-predikin binding catalysis catalytic conformation crystallography data dimerization domain enzyme folding homology kinetics models molecular mutation p21-activated phosphopeptides phosphorylation protein protein-serine-threonine sequence sites structure tertiary x-ray by neils on 2007-12-04 03:22:14 as **
  • How do protein kinases recognize their substrates?
    Biochim Biophys Acta, Vol. 1314, No. 3. (Dec 1996), pp. 191-225.
    by LA Pinna, M Ruzzene
    posted to animal kinase amino-acid article-predikin consensus data library molecular peptide phosphorylation protein sequence specificity substrate by neils on 2007-12-04 03:22:14 as **
  • Active Ca2+/calmodulin-dependent protein kinase II gamma B impairs positive selection of T cells by modulating TCR signaling.
    J Immunol, Vol. 175, No. 2. (Jul 2005), pp. 656-664.
    by Maureen A Mcgargill, Leslie L Sharp, Jack D Bui, Stephen M Hedrick, Sébastien Calbo
    posted to subset peptide human antigen animal receptor domain article-predikin c57bl ca2-calmodulin calcium cd3 cell dependent differentiation female fluid homology inbred intracellular isoenzymes kinase knockout line lymphocyte male mice p56lck phosphorylation protein protein-tyrosine-phosphatase signal signaling specific src t-cell t-lymphocyte transduction transgenic tumor tyrosine by neils on 2007-12-04 03:22:14 as **
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