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nklee Wang [15 articles]

Recent papers posted to nklee library by the author Wang. You can also see Wang everyone.
  • Feature Selection for Gene Expression using Model-based Entropy
    Computational Biology and Bioinformatics, IEEE/ACM Transactions on, Vol. 1, No. 2., pp. 1-2.
    by S Zhu, D Wang, T Li
    posted to selection feature by nklee on 2008-09-25 05:30:14 as **
  • Finding the Nearest Neighbors in Biological Databases Using Less Distance Computations
    Computational Biology and Bioinformatics, IEEE/ACM Transactions on, Vol. 1, No. 1. (2009), pp. 1-10.
    by J Zhou, J Sander, Z Cai, L Wang, G Lin
    posted to neighbor nearest by nklee on 2008-09-25 05:23:25 as **
  • Enhanced position weight matrices using mixture models
    Bioinformatics, Vol. 21, No. Suppl_1. (2005), pp. i204-i212.
    by Sridhar Hannenhalli, Li-San Wang
    posted to mixture model by nklee on 2008-07-08 05:33:45 as **
  • Divergence of Transcription Factor Binding Sites Across Related Yeast Species
    Science, Vol. 317, No. 5839. (10 August 2007), pp. 815-819.
    by Anthony R Borneman, Tara A Gianoulis, Zhengdong D Zhang, Haiyuan Yu, Joel Rozowsky, Michael R Seringhaus, Lu Y Wang, Mark Gerstein, Michael Snyder
    posted to divergence yeast by nklee on 2008-04-28 03:31:03 as ** along with 18 people and 2 groups caseybrown bryankr aalibes chad_davis dpollard djkt mikaelhuss lusk cjeans sujaikumar zwang GustavoLacerda Jporci maximilianh cisevol njcitulike emptyhb anka EisenLab cis-regulatory-evolution
  • A Profile-Based Deterministic Sequential Monte Carlo Algorithm for Motif Discovery.
    Bioinformatics (17 November 2007)
    by Kuo-Ching C Liang, Xiaodong Wang, Dimitris Anastassiou
    posted to no-tag by nklee on 2008-04-01 08:23:43 as ** along with 5 people and 1 group grahamc cjeans maximilianh idonaldson isimpson Motif Discovery
  • Incorporating background frequency improves entropy-based residue conservation measures
    BMC Bioinformatics, Vol. 7 (17 August 2006), 385.
    by Kai Wang, Ram Samudrala
    posted to analysis conservation entropy by nklee on 2008-02-13 06:01:31 as *** along with 2 people marti bicko
  • iGibbs: Improving Gibbs motif sampler for proteins by sequence clustering and iterative pattern sampling
    Proteins: Structure, Function, and Bioinformatics, Vol. 66, No. 3. (2007), pp. 671-681.
    by Sun Kim, Zhiping Wang, Mehmet Dalkilic
    posted to clustering gibbs by nklee on 2008-01-22 01:57:53 as **
  • Rapid analysis of the DNA-binding specificities of transcription factors with DNA microarrays
    Nature Genetics, Vol. 36, No. 12. (14 November 2004), 1331.
    by Sonali Mukherjee, Michael F Berger, Ghil Jona, Xun S Wang, Dale Muzzey, Michael Snyder, Richard A Young, Martha L Bulyk
    posted to cell comparative cycle genomic yeast by nklee on 2008-01-01 05:28:00 as ** along with 5 people johncumbers olympos emptyhb yevishere kristallreiner
  • ArchaeaTF: An integrated database of putative transcription factors in Archaea
    Genomics, Vol. 91, No. 1. (January 2008), pp. 102-107.
    by Jinyu Wu, Shengqin Wang, Jie Bai, Liang Shi, Dong Li, Zuyuan Xu, Yuxin Niu, Jianxin Lu, Qiyu Bao
    posted to database by nklee on 2007-12-26 23:43:00 as ** along with 1 person balicea
  • The genome sequence of Drosophila melanogaster.
    Science, Vol. 287, No. 5461. (24 March 2000), pp. 2185-2195.
    by MD Adams, SE Celniker, RA Holt, CA Evans, JD Gocayne, PG Amanatides, SE Scherer, PW Li, RA Hoskins, RF Galle, RA George, SE Lewis, S Richards, M Ashburner, SN Henderson, GG Sutton, JR Wortman, MD Yandell, Q Zhang, LX Chen, RC Brandon, YH Rogers, RG Blazej, M Champe, BD Pfeiffer, KH Wan, C Doyle, EG Baxter, G Helt, CR Nelson, GL Gabor, JF Abril, A Agbayani, HJ An, C Andrews-Pfannkoch, D Baldwin, RM Ballew, A Basu, J Baxendale, L Bayraktaroglu, EM Beasley, KY Beeson, PV Benos, BP Berman, D Bhandari, S Bolshakov, D Borkova, MR Botchan, J Bouck, P Brokstein, P Brottier, KC Burtis, DA Busam, H Butler, E Cadieu, A Center, I Chandra, JM Cherry, S Cawley, C Dahlke, LB Davenport, P Davies, B de Pablos, A Delcher, Z Deng, AD Mays, I Dew, SM Dietz, K Dodson, LE Doup, M Downes, S Dugan-Rocha, BC Dunkov, P Dunn, KJ Durbin, CC Evangelista, C Ferraz, S Ferriera, W Fleischmann, C Fosler, AE Gabrielian, NS Garg, WM Gelbart, K Glasser, A Glodek, F Gong, JH Gorrell, Z Gu, P Guan, M Harris, NL Harris, D Harvey, TJ Heiman, JR Hernandez, J Houck, D Hostin, KA Houston, TJ Howland, MH Wei, C Ibegwam, M Jalali, F Kalush, GH Karpen, Z Ke, JA Kennison, KA Ketchum, BE Kimmel, CD Kodira, C Kraft, S Kravitz, D Kulp, Z Lai, P Lasko, Y Lei, AA Levitsky, J Li, Z Li, Y Liang, X Lin, X Liu, B Mattei, TC McIntosh, MP McLeod, D McPherson, G Merkulov, NV Milshina, C Mobarry, J Morris, A Moshrefi, SM Mount, M Moy, B Murphy, L Murphy, DM Muzny, DL Nelson, DR Nelson, KA Nelson, K Nixon, DR Nusskern, JM Pacleb, M Palazzolo, GS Pittman, S Pan, J Pollard, V Puri, MG Reese, K Reinert, K Remington, RD Saunders, F Scheeler, H Shen, BC Shue, I Sidén-Kiamos, M Simpson, MP Skupski, T Smith, E Spier, AC Spradling, M Stapleton, R Strong, E Sun, R Svirskas, C Tector, R Turner, E Venter, AH Wang, X Wang, ZY Wang, DA Wassarman, GM Weinstock, J Weissenbach, SM Williams, WoodageT, KC Worley, D Wu, S Yang, QA Yao, J Ye, RF Yeh, JS Zaveri, M Zhan, G Zhang, Q Zhao, L Zheng, XH Zheng, FN Zhong, W Zhong, X Zhou, S Zhu, X Zhu, HO Smith, RA Gibbs, EW Myers, GM Rubin, JC Venter
    posted to drosophila melanogaster by nklee on 2007-12-19 01:55:52 as ** along with 7 people and 1 group sdinka Cortel jwortman Dax42 jackjackjjj yulian2108 hplatero Drosophila-Genetics-Genomics-2008
  • Assessing the impact of comparative genomic sequence data on the functional annotation of the Drosophila genome.
    Genome Biol, Vol. 3, No. 12. (2002)
    by CM Bergman, BD Pfeiffer, DE Rincón-Limas, RA Hoskins, A Gnirke, CJ Mungall, AM Wang, B Kronmiller, J Pacleb, S Park, M Stapleton, K Wan, RA George, PJ de Jong, J Botas, GM Rubin, SE Celniker
    posted to comparative drosophila genome by nklee on 2007-12-19 01:54:54 as *** along with 4 people and 2 groups indigoviolet dpollard cisevol brant EisenLab cis-regulatory-evolution
  • An improved map of conserved regulatory sites for Saccharomyces cerevisiae.
    BMC Bioinformatics, Vol. 7, No. 1. (7 March 2006)
    by Kenzie D Macisaac, Ting Wang, Benjamin D Gordon, David K Gifford, Gary D Stormo, Ernest Fraenkel
    posted to yeast by nklee on 2007-11-01 03:43:19 as ** along with 7 people tuck eckart_bindewald cconboy raiyar lusk barwil kristallreiner
  • A bottom-up approach to gene regulation
    Nature, Vol. 439, No. 7078. (16 February 2006), pp. 856-860.
    by Nicholas J Guido, Xiao Wang, David Adalsteinsson, David Mcmillen, Jeff Hasty, Charles R Cantor, Timothy C Elston, JJ Collins
    posted to no-tag by nklee on 2007-10-10 23:26:06 as ** along with 15 people and 2 groups raik rklancer snuppepuppan jyuh okarsligil bayesian balicea samal madhadron balabu johncumbers mmt proulx dbikard tmmurali Bioinformatics SynBioSys
  • CLUSS: Clustering of protein sequences based on a new similarity measure
    BMC Bioinformatics, Vol. 8 (04 August 2007), 286.
    by Abdellali Kelil, Shengrui Wang, Ryszard Brzezinski, Alain Fleury
    posted to no-tag by nklee on 2007-09-28 08:07:27 as ** along with 3 people and 1 group grahamc ninch bobychan ParkinsonLab_at_MaRS
  • A cross-species alignment tool (CAT)
    BMC Bioinformatics, Vol. 8 (19 September 2007), 349.
    by Heng Li, Liang Guan, Tao Liu, Yiran Guo, Wei-Mou Zheng, Gane K Wong, Jun Wang
    posted to no-tag by nklee on 2007-09-26 09:14:51 as ** along with 1 person jyuh
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