Регистрация | Вход в службу | FAQ      [?] 
Recent | Unread | Search | Authors | Tags | Export

nklee library [301 articles]

Статьи, недавно добавленные в библиотеку nklee library ordered by importance.
  • Factors influencing the identification of transcription factor binding sites by cross-species comparison.
    Genome Res, Vol. 12, No. 10. (October 2002), pp. 1523-1532.
    by LA McCue, W Thompson, CS Carmack, CE Lawrence
    posted to cross-species by nklee on 2007-09-30 23:52:11 as ***** along with 2 people kaarsinogen dquest
  • Evolution of transcription factor DNA binding sites.
    Gene, Vol. 347, No. 2. (14 March 2005), pp. 255-263.
    by EA Kotelnikova, VJ Makeev, MS Gelfand
    posted to binding consensus energy matrix position weight by nklee on 2007-09-30 23:47:15 as ***** along with 4 people and 1 group balajis gpalidwor cisevol yevishere cis-regulatory-evolution
  • Raising the estimate of functional human sequences.
    Genome Res (9 August 2007)
    by Michael Pheasant, John S S Mattick
    posted to functional genome signal by nklee on 2007-09-19 23:35:06 as ***** along with 9 people and 2 groups jyuh jfr andersbj djkt grahamc lp2 cabbagezs ljs mimulus_99 microRNA ParkinsonLab_at_MaRS
  • Enumerating and Ranking Discrete Motifs
    pp. 202-209.
    by Craig, Komal S Sethi, Thomas D Wu, Douglas L Brutlag
    posted to important by nklee on 2007-07-27 03:09:11 as *****
  • Incorporating background frequency improves entropy-based residue conservation measures
    BMC Bioinformatics, Vol. 7 (17 August 2006), 385.
    by Kai Wang, Ram Samudrala
    posted to analysis conservation entropy by nklee on 2008-02-13 06:01:31 as *** along with 1 person marti
  • Large-Scale Discovery of Promoter Motifs in Drosophila melanogaster
    PLoS Computational Biology, Vol. 3, No. 1. (1 January 2007), e7.
    by Thomas A Down, Casey M Bergman, Jing Su, Tim J Hubbard
    posted to drosophila melanogaster by nklee on 2008-02-01 06:11:17 as *** along with 6 people and 1 group isimpson indigoviolet dpollard dquest SeungjoonOh emptyhb EisenLab
  • A novel approach to identifying regulatory motifs in distantly related genomes
    Genome Biology, Vol. 6, No. 13. (2005)
    by Ruth Van Hellemont, Pieter Monsieurs, Gert Thijs, Bart De Moor, Yves Van de Peer, Kathleen Marchal
    posted to clustering comparative footprinting genomic by nklee on 2008-01-31 04:19:31 as ***
  • Rank order metrics for quantifying the association of sequence features with gene regulation.
    Bioinformatics, Vol. 19, No. 2. (22 January 2003), pp. 212-218.
    by ND Clarke, JA Granek
    posted to hypergeometric significance statistical by nklee on 2008-01-28 00:09:55 as *** along with 1 person and 1 group kaspermunch Bioinformatics
  • Transcriptional regulatory networks in Saccharomyces cerevisiae.
    Science, Vol. 298, No. 5594. (25 October 2002), pp. 799-804.
    by TI Lee, NJ Rinaldi, F Robert, DT Odom, Z Bar-Joseph, GK Gerber, NM Hannett, CT Harbison, CM Thompson, I Simon, J Zeitlinger, EG Jennings, HL Murray, DB Gordon, B Ren, JJ Wyrick, JB Tagne, TL Volkert, E Fraenkel, DK Gifford, RA Young
    posted to genomic yeast by nklee on 2008-01-01 23:51:40 as *** along with 23 people and 2 groups Borelli kristallreiner brant camster snuppepuppan icases forluvoft ggrot alokm opheliav samal sameetmehta cconboy koller jguinney franklin timflutre jpoyatos lusk karfunkel mimulus_99 roys njcitulike dbk-lab TNT
  • Data clustering: a review
    ACM Computing Surveys, Vol. 31, No. 3. (1999), pp. 264-323.
    by AK Jain, MN Murty, PJ Flynn
    posted to algorithm clustering review survey by nklee on 2008-01-01 04:15:05 as *** along with 23 people and 3 groups burtonwu radical V pdlug stanley jelsas sona gangli macowell mhaller ali grimm numata carueda microserf rahul aviad_work rchauhan sugarexpletive anirudhvr stewi2 MortMan shinichi3 tulip SRL BUiGEM
  • Effective transcription factor binding site prediction using a combination of optimization, a genetic algorithm and discriminant analysis to capture distant interactions
    BMC Bioinformatics, Vol. 8, No. 1. (2007)
    by Victor Levitsky, Elena Ignatieva, Elena Ananko, Igor Turnaev, Tatyana Merkulova, Nikolay Kolchanov, T Hodgman
    posted to algorithm genetic by nklee on 2007-12-20 03:31:47 as *** along with 4 people xili03 maximilianh yevishere csdhwang
  • Assessing the impact of comparative genomic sequence data on the functional annotation of the Drosophila genome.
    Genome Biol, Vol. 3, No. 12. (2002)
    by CM Bergman, BD Pfeiffer, DE Rincón-Limas, RA Hoskins, A Gnirke, CJ Mungall, AM Wang, B Kronmiller, J Pacleb, S Park, M Stapleton, K Wan, RA George, PJ de Jong, J Botas, GM Rubin, SE Celniker
    posted to comparative drosophila genome by nklee on 2007-12-19 01:54:54 as *** along with 4 people and 2 groups brant indigoviolet dpollard cisevol EisenLab cis-regulatory-evolution
  • Position dependencies in transcription factor binding sites.
    Bioinformatics, Vol. 23, No. 8. (15 April 2007), pp. 933-941.
    by A Tomovic, EJ Oakeley
    posted to dependency position by nklee on 2007-11-29 21:56:11 as *** along with 2 people aalibes yevishere
  • Sequencing and comparison of yeast species to identify genes and regulatory elements
    Nature, Vol. 423, No. 6937. (15 May 2003), pp. 241-254.
    by Manolis Kellis, Nick Patterson, Matthew Endrizzi, Bruce Birren, Eric S Lander
    posted to comparative motif yeast by nklee on 2007-11-27 06:30:25 as *** along with 2 people kaarsinogen lyongu
  • Finding coevolving amino acid residues using row and column weighting of mutual information and multi-dimensional amino acid representation
    Algorithms for Molecular Biology, Vol. 2 (03 October 2007), 12.
    by Rodrigo Gouveia-Oliveira, Anders G Pedersen
    posted to entropy information mutual by nklee on 2007-11-27 06:14:51 as *** along with 3 people ca3295 bicko IrinaMoreira
  • Unifying cost and information in information-theoretic competitive learning
    Neural Networks, Vol. 18, No. 5-6. ( 2005), pp. 711-718.
    by Ryotaro Kamimura
    posted to entropy information learning network neural by nklee on 2007-11-15 20:45:06 as ***
  • Discovery of functional elements in 12 Drosophila genomes using evolutionary signatures
    Nature, Vol. 450, No. 7167., pp. 219-232.
    by Alexander Stark, Michael F Lin, Pouya Kheradpour, Jakob S Pedersen, Leopold Parts, Joseph W Carlson, Madeline A Crosby, Matthew D Rasmussen, Sushmita Roy, Ameya N Deoras, Graham J Ruby, Julius Brennecke, Harvard F Curators, Berkeley, Emily Hodges, Angie S Hinrichs, Anat Caspi, Benedict Paten, Seung-Won Park, Mira V Han, Morgan L Maeder, Benjamin J Polansky, Bryanne E Robson, Stein Aerts, Jacques van Helden, Bassem Hassan, Donald G Gilbert, Deborah A Eastman, Michael Rice, Michael Weir, Matthew W Hahn, Yongkyu Park, Colin N Dewey, Lior Pachter, James W Kent, David Haussler, Eric C Lai, David P Bartel, Gregory J Hannon, Thomas C Kaufman, Michael B Eisen, Andrew G Clark, Douglas Smith, Susan E Celniker, William M Gelbart, Manolis Kellis
    posted to comparative genome by nklee on 2007-11-07 20:55:20 as *** along with 13 people and 2 groups shuzhens PetrovLab operon tmmurali djkt timflutre stajich lp2 cabbagezs hpaces roys caseybrown gjuggler csb_journal_club_public Berkeley Mycology
  • The Hierarchical Fast Learning Artificial Neural Network (HieFLANN)--An Autonomous Platform for Hierarchical Neural Network Construction
    Neural Networks, IEEE Transactions on, Vol. 18, No. 6. (2007), pp. 1645-1657.
    by ALP Tay, JM Zurada, LP Wong, J Xu
    posted to heirarchical network neural by nklee on 2007-11-06 21:37:31 as ***
  • Meta-analysis discovery of tissue-specific DNA sequence motifs from mammalian gene expression data.
    BMC Bioinformatics, Vol. 7 (2006)
    by BR Huber, ML Bulyk
    posted to filtering merging motifs by nklee on 2007-10-26 01:34:10 as *** along with 2 people and 1 group indigoviolet gpalidwor EisenLab
  • Automated derivation and refinement of sequence length patterns for protein sequences using evolutionary computation
    Biosystems, Vol. 81, No. 3. (September 2005), pp. 247-254.
    by MI Sadowski, JH Parish, DR Westhead
    posted to algorithm computing evolutionary genetic by nklee on 2007-10-16 04:47:04 as ***
  • Comparative analysis of regulatory motif discovery tools for transcription factor binding sites.
    Genomics Proteomics Bioinformatics, Vol. 5, No. 2. (May 2007), pp. 131-142.
    by W Wei, XD Yu
    posted to discovery motif survey tools by nklee on 2007-10-08 00:00:39 as *** along with 3 people natstreet maximilianh heliopais
  • A Study of Statistical Methods for Function Prediction of Protein Motifs
    Applied Bioinformatics, Vol. 3, No. 2-3. (2004), pp. 115-124.
    by Tao Tao, Cheng X Zhai, Xinghua Lu, Hui Fang
    posted to motifs scoring statistical function by nklee on 2007-10-01 06:05:16 as ***
  • Computational identification of developmental enhancers: conservation and function of transcription factor binding-site clusters in Drosophila melanogaster and Drosophila pseudoobscura.
    Genome Biol, Vol. 5, No. 9. (2004)
    by BP Berman, BD Pfeiffer, TR Laverty, SL Salzberg, GM Rubin, MB Eisen, SE Celniker
    posted to enhancers by nklee on 2007-09-30 23:50:43 as *** along with 6 people and 2 groups maximilianh mbeisen indigoviolet adepace Stew cisevol EisenLab cis-regulatory-evolution
  • Measuring similarities between transcription factor binding sites
    BMC Bioinformatics, Vol. 6, No. 1. (2005)
    by Szymon Kielbasa, Didier Gonze, Hanspeter Herzel
    posted to metric similarity by nklee on 2007-09-30 23:49:23 as *** along with 1 person aalibes
  • The design of transcription-factor binding sites is affected by combinatorial regulation.
    Genome Biol, Vol. 6, No. 12. (2005)
    by Y Bilu, N Barkai
    posted to combinatorial regulation by nklee on 2007-09-30 23:46:30 as *** along with 7 people and 1 group chrn dpollard tabu samal adepace lewbin xili03 EisenLab
  • MotifCombinator: a web-based tool to search for combinations of cis-regulatory motifs
    BMC Bioinformatics, Vol. 8 (22 March 2007), 100.
    by Mamoru Kato, Tatsuhiko Tsunoda
    posted to algorithm genetic by nklee on 2007-09-28 08:21:00 as *** along with 3 people and 1 group isimpson cwbrown idonaldson EisenLab
  • Comparative Genomic
    Annu. Rev. Genomics Hum. Genet, Vol. 5 (2004), pp. 15-56.
    by Webb Miller, Kateryna D Makova, Anton Nekrutenko, Ross C Hardison
    posted to comparative genomic by nklee on 2007-09-26 09:24:02 as ***
  • Multiple sequence alignment with user-defined anchor points
    Algorithms for Molecular Biology, Vol. 1 (19 April 2006), 6.
    by Burkhard Morgenstern, Sonja J Prohaska, Dirk Pöhler, Peter F Stadler
    posted to alignment anchored multiple by nklee on 2007-09-20 00:40:03 as ***
  • Analysis of computational approaches for motif discovery
    Algorithms for Molecular Biology, Vol. 1, No. 1. (19 May 2006), 8.
    by Nan Li, Martin Tompa
    posted to analysis discovery motif tools by nklee on 2007-09-19 07:03:30 as *** along with 9 people and 2 groups ana barry tuck chad_davis dquest lusk maximilianh xi03 csdhwang structural_bioinformatics Bioinformatics
  • Enhanced position weight matrices using mixture models
    Bioinformatics, Vol. 21, No. Suppl_1. (2005), pp. i204-i212.
    by Sridhar Hannenhalli, Li-San Wang
    posted to model mixture by nklee on 2008-07-08 05:33:45 as **
  • Finite Mixture Models
    (02 October 2000)
    by Geoffrey Mclachlan, David Peel
    posted to mixture by nklee on 2008-07-08 05:27:37 as ** along with 4 people amsantos ctacmo OscarRueda vplagnol
  • Optimal Smoothing of Kernel-Based Topographic Maps with Application to Density-Based Clustering of Shapes
    The Journal of VLSI Signal Processing, Vol. 37, No. 2. (1 June 2004), pp. 211-222.
    by Marc M Van Hulle, Temujin Gautama
    posted to maximum likelihood by nklee on 2008-06-27 06:10:35 as **
  • Non-additivity in protein-DNA binding.
    Bioinformatics, Vol. 21, No. 10. (15 May 2005), pp. 2254-2263.
    by RA O'Flanagan, G Paillard, R Lavery, AM Sengupta
    posted to energy dependency binding by nklee on 2008-06-20 05:35:23 as ** along with 2 people and 1 group reidy blobbybirdman UH - Computational Biology
  • Revisiting the Saccharomyces cerevisiae predicted ORFeome
    Genome Res. (23 May 2008), gr.076661.108.
    by Qian-Ru Li, Anne-Ruxandra Carvunis, Haiyuan Yu, Jing-Dong J Han, Quan Zhong, Nicolas Simonis, Stanley Tam, Tong Hao, Niels J Klitgord, Denis Dupuy, Danny Mou, Ilan Wapinski, Aviv Regev, David E Hill, Michael E Cusick, Marc Vidal
    posted to yeast genome by nklee on 2008-06-20 02:38:24 as ** along with 2 people and 1 group stajich dbensasson Berkeley Mycology
  • Tuning in to the signals: noncoding sequence conservation in vertebrate genomes
    Trends in Genetics, Vol. In Press, Corrected Proof
    by Greg Elgar, Tanya Vavouri
    posted to comparative by nklee on 2008-06-20 02:35:53 as ** along with 2 people dchughes djkt
  • Market segmentation by maximum likelihood clustering using choice elasticities
    European journal of operational research, Vol. 154, No. 3. (2004), pp. 779-786.
    by Harald Hruschka, Werner Fettes, Markus Probst
    posted to maximum likelihood by nklee on 2008-06-18 09:08:55 as **
  • Maximum likelihood competitive learning
    Vol. 2 (1990)
    by S Nowlan
    edited by D Touretzky
    posted to maximum likelihood clustering by nklee on 2008-06-17 07:42:54 as **
  • ROC analysis: applications to the classification of biological sequences and 3D structures
    Brief Bioinform (11 January 2008), bbm064.
    by Paolo Sonego, Andras Kocsor, Sandor Pongor
    posted to roc analysis by nklee on 2008-06-16 06:27:01 as ** along with 4 people spsdigest neils girschick cjeans
  • Unsupervised learning of finite mixture models
    Pattern Analysis and Machine Intelligence, IEEE Transactions on, Vol. 24, No. 3. (2002), pp. 381-396.
    by MAF Figueiredo, AK Jain
    posted to mixture by nklee on 2008-06-12 05:09:28 as ** along with 4 people and 2 groups alexr balicea shilad edmundo59 Autoregulation GroupLens
  • Testing the number of components in a normal mixture
    Biometrika, Vol. 88, No. 3. (1 October 2001), pp. 767-778.
    by Yungtai Lo, Nancy R Mendell, Donald B Rubin
    posted to mixture by nklee on 2008-06-12 05:04:28 as ** along with 1 person gjuggler
  • Self-organizing mixture networks for probability density estimation
    Neural Networks, IEEE Transactions on, Vol. 12, No. 2. (2001), pp. 405-411.
    by H Yin, NM Allinson
    posted to mixture by nklee on 2008-06-10 02:53:11 as **
  • Self-organizing maps, vector quantization, and mixture modeling
    Neural Networks, IEEE Transactions on, Vol. 12, No. 6. (2001), pp. 1299-1305.
    by T Heskes
    posted to model mixture by nklee on 2008-06-10 02:50:15 as ** along with 1 person zhengzhong
  • Differential binding of quadruplex structures of muscle-specific genes regulatory sequences by MyoD, MRF4 and myogenin
    Nucl. Acids Res. (29 May 2008), gkn340.
    by Anat Yafe, Jeny Shklover, Pnina Weisman-Shomer, Eyal Bengal, Michael Fry
    posted to muscle by nklee on 2008-06-06 11:22:21 as **
  • Natural selection promotes the conservation of linkage of co-expressed genes
    Trends in Genetics, Vol. 18, No. 12. (1 December 2002), pp. 604-606.
    by Laurence D Hurst, Elizabeth J Williams, Csaba Pál
    posted to conservation by nklee on 2008-05-30 03:19:49 as **
  • Conservation of divergent transcription in fungi
    Trends in Genetics, Vol. 24, No. 5. (May 2008), pp. 207-211.
    by Philip R Kensche, Martin Oti, Bas E Dutilh, Martijn A Huynen
    posted to conservation comparative by nklee on 2008-05-30 03:13:26 as ** along with 1 person and 1 group stajich Berkeley Mycology
  • A new approach to the assessment of the quality of predictions of transcription factor binding sites
    Journal of Biomedical Informatics, Vol. 40, No. 2. (April 2007), pp. 139-149.
    by Szymon Nowakowski, Jerzy Tiuryn
    posted to evaluation by nklee on 2008-05-20 03:16:24 as **
  • A new model of self-organizing neural networks and its application in data projection
    Neural Networks, IEEE Transactions on, Vol. 12, No. 1. (2001), pp. 153-158.
    by Mu-Chun Su, Hsiao-Te Chang
    posted to neural network dsom by nklee on 2008-05-16 00:16:09 as **
  • Nucleosome positions predicted through comparative genomics
    Nature Genetics, Vol. 38, No. 10. (10 September 2006), pp. 1210-1215.
    by Ilya P Ioshikhes, Istvan Albert, Sara J Zanton, Franklin B Pugh
    posted to nucleosome by nklee on 2008-05-14 23:55:43 as **
  • Statistics review 1: presenting and summarising data.
    Crit Care, Vol. 6, No. 1. (February 2002), pp. 66-71.
    by E Whitley, J Ball
    posted to statistics by nklee on 2008-05-09 03:32:05 as ** along with 1 person jyuh
  • Statistics review 2: samples and populations.
    Crit Care, Vol. 6, No. 2. (April 2002), pp. 143-148.
    by E Whitley, J Ball
    posted to statistics by nklee on 2008-05-09 03:30:34 as ** along with 1 person jyuh
    • Вы можете ссылаться на эту страницу по адресу: http://www.citeulike.org/user/nklee/order/to_read

    Result page: 1 2 3 4 5 Next RIS BibTeX RSS
    CiteULike organises scholarly (or academic) papers or literature and provides bibliographic (which means it makes bibliographies) for universities and higher education establishments. It helps undergraduates and postgraduates. People studying for PhDs or in postdoctoral (postdoc) positions. The service is similar in scope to EndNote or RefWorks or any other reference manager like BibTeX, but it is a social bookmarking service for scientists and humanities researchers.