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nknii library [49 articles]

Статьи, недавно добавленные в библиотеку nknii .
  • Simple electrostatic model improves designed protein sequences.
    Protein Sci (5 July 2006)
    by Eric S S Zollars, Shannon A A Marshall, Stephen L L Mayo
    posted to design by nknii on 2006-07-17 06:24:00 as ** along with 1 group TCR_Signaling
  • Molecular dynamics study of a calmodulin-like protein with an IQ peptide: Spontaneous refolding of the protein around the peptide.
    Proteins (27 March 2006)
    by Assaf Ganoth, Esther Nachliel, Ran Friedman, Menachem Gutman
    posted to dynamics by nknii on 2006-05-09 09:56:10 as ** along with 1 group TCR_Signaling
  • The crystal structure of human receptor protein tyrosine phosphatase kappa phosphatase domain 1.
    Protein Sci (2 May 2006)
    by Jeyanthy Eswaran, Judit É E Debreczeni, Emma Longman, Alastair J J Barr, Stefan Knapp
    posted to phosphatase by nknii on 2006-05-09 09:45:42 as ** along with 1 group TCR_Signaling
  • The occurrence of C--H...O hydrogen bonds in alpha-helices and helix termini in globular proteins.
    Proteins, Vol. 56, No. 4. (1 September 2004), pp. 768-781.
    by K Manikandan, S Ramakumar
    posted to folding by nknii on 2006-05-09 09:35:12 as ** along with 1 group TCR_Signaling
  • Protein kinase classification.
    Methods Enzymol, Vol. 200 (1991), pp. 3-37.
    by T Hunter
    posted to kinase_str by nknii on 2006-05-09 06:09:42 as ** along with 1 group TCR_Signaling
  • Use of baculovirus MHCpeptide display libraries to characterize T-cell receptor ligands
    Immunological Reviews, Vol. 210, No. 1. (April 2006), pp. 156-170.
    by Crawford, Frances, Jordan, R Kimberly, Stadinski, Brian, Wang, Yibing, Huseby, Eric, Marrack, Philippa, Slansky, E Jill, Kappler, W John
    posted to mhc mhc_binding by nknii on 2006-04-25 18:50:57 as ** along with 1 person and 1 group eisei TCR_Signaling
  • MHC and T cell interactions of a universal T-cell epitope from Plasmodium falciparum circumsporozoite protein.
    J Biol Chem (23 March 2006)
    by Carlos Parra-Lopez, J Mauricio M Calvo-Calle, Thomas O O Cameron, Luis E E Vargas, Luz Mary M Salazar, Manuel E E Patarroyo, Elizabeth H H Nardin, Lawrence J J Stern
    posted to mhc_binding by nknii on 2006-04-03 10:14:39 as ** along with 1 group TCR_Signaling
  • Functional interactions of protein kinase A and C in signalling networks: a recapitulation.
    Cell Mol Life Sci, Vol. 63, No. 6. (March 2006), pp. 637-641.
    by E Maioli, C Torricelli, V Fortino
    posted to kinase_network_example by nknii on 2006-03-30 07:45:34 as ** along with 1 group TCR_Signaling
  • The regulatory roles of the galactose permease and kinase in the induction response of the GAL network in Saccharomyces cerevisiae.
    J Biol Chem (7 March 2006)
    by Kristy M M Hawkins, Christina D D Smolke
    posted to kinase_network_example by nknii on 2006-03-30 07:44:05 as ** along with 1 person and 1 group mhucka TCR_Signaling
  • A network-based analysis of systemic inflammation in humans
    Nature (31 August 2005)
    by Steve E Calvano, Wenzhong Xiao, Daniel R Richards, Ramon M Felciano, Henry V Baker, Raymond J Cho, Richard O Chen, Bernard H Brownstein, Perren J Cobb, Kevin S Tschoeke, Carol Miller-Graziano, Lyle L Moldawer, Michael N Mindrinos, Ronald W Davis, Ronald G Tompkins, Stephen F Lowry, Inflammation
    posted to network networks by nknii on 2006-03-30 07:40:01 as ** along with 12 people and 1 group beapen jyuh textoris tuck VCKALIA juliajumeau maryee lhonigberg noano grahamc massivemayhem karfunkel TCR_Signaling
  • Structures of Src-family tyrosine kinases.
    Curr Opin Struct Biol, Vol. 7, No. 6. (December 1997), pp. 777-785.
    by F Sicheri, J Kuriyan
    posted to kinase_str by nknii on 2006-03-29 08:21:07 as ** along with 1 group TCR_Signaling
  • Implicit solvation in the self-consistent mean field theory method: sidechain modelling and prediction of folding free energies of protein mutants.
    J Comput Aided Mol Des, Vol. 15, No. 8. (August 2001), pp. 721-740.
    by J Mendes, AM Baptista, MA Carrondo, CM Soares
    posted to design by nknii on 2006-03-27 05:44:53 as ** along with 1 group TCR_Signaling
  • Resurrecting the ancestral enzymatic role of a modulatory subunit.
    J Biol Chem, Vol. 280, No. 11. (18 March 2005), pp. 10189-10195.
    by MA Ballicora, JR Dubay, CH Devillers, J Preiss
    posted to kinase_network by nknii on 2006-03-10 18:50:46 as ** along with 1 person and 1 group matzke TCR_Signaling
  • How does activation loop phosphorylation modulate catalytic activity in the cAMP-dependent protein kinase: A theoretical study.
    Protein Sci (7 March 2006)
    by Yuhui Cheng, Yingkai Zhang, J Andrew A McCammon
    posted to kinase_str by nknii on 2006-03-10 18:46:22 as ** along with 1 person and 1 group barry TCR_Signaling
  • Structures of S. aureus thymidylate kinase reveal an atypical active site configuration and an intermediate conformational state upon substrate binding.
    Protein Sci (7 March 2006)
    by Masayo Kotaka, Balvinder Dhaliwal, Jingshan Ren, Charles E E Nichols, Richard Angell, Michael Lockyer, Alastair R R Hawkins, David K K Stammers
    posted to kinase_str by nknii on 2006-03-10 18:45:50 as ** along with 1 group TCR_Signaling
  • A molecular dynamics simulation of SNase and its hydration shell at high temperature and high pressure.
    Biochim Biophys Acta (25 January 2006)
    by Nikolai Smolin, Roland Winter
    posted to simulation by nknii on 2006-03-10 18:44:43 as ** along with 1 person and 1 group choonpeng TCR_Signaling
  • Ca2+ stimulation of adenylyl cyclase generates dynamic oscillations in cyclic AMP.
    J Cell Sci, Vol. 119, No. Pt 5. (1 March 2006), pp. 828-836.
    by D Willoughby, DM Cooper
    posted to networks simulation by nknii on 2006-03-10 18:41:41 as ** along with 1 group TCR_Signaling
  • Protein grabs a ligand by extending anchor residues: Molecular simulation for Ca2+ binding to calmodulin loop.
    Biophys J (10 February 2006)
    by Chigusa Kobayashi, Shoji Takada
    posted to simulation by nknii on 2006-03-10 18:40:49 as ** along with 1 group TCR_Signaling
  • Metabolomics, modelling and machine learning in systems biology - towards an understanding of the languages of cells.
    FEBS J, Vol. 273, No. 5. (March 2006), pp. 873-894.
    by DB Kell
    posted to network by nknii on 2006-03-10 18:39:55 as ** along with 2 people and 1 group alanrw Borelli TCR_Signaling
  • Dynamics of the RAS/ERK map kinase cascade as monitored by fluorescence probes.
    J Biol Chem (17 January 2006)
    by Aki Fujioka, Kenta Terai, Reina E E Itoh, Kazuhiro Aoki, Takeshi Nakamura, Shinya Kuroda, Eisuke Nishida, Michiyuki Matsuda
    posted to kinase_network by nknii on 2006-03-10 18:34:33 as ** along with 1 group TCR_Signaling
  • Native protein sequences are designed to destabilize folding intermediates.
    Biochemistry, Vol. 45, No. 8. (28 February 2006), pp. 2488-2492.
    by Y Isogai
    posted to folding by nknii on 2006-03-10 18:23:14 as ** along with 1 person and 1 group bilab TCR_Signaling
  • The Death-Associated Protein Kinases: Structure, Function, and Beyond.
    Annu Rev Biochem (16 February 2006)
    by Shani Bialik, Adi Kimchi
    posted to kinase_network by nknii on 2006-03-10 18:19:00 as ** along with 1 group TCR_Signaling
  • Low degree metabolites explain essential reactions and enhance modularity in biological networks.
    BMC Bioinformatics, Vol. 7, No. 1. (8 March 2006)
    by Areejit Samal, Shalini Singh, Varun Giri, Sandeep Krishna, Nandula Raghuram, Sanjay Jain
    posted to network by nknii on 2006-03-10 18:06:04 as ** along with 1 group TCR_Signaling
  • A motif-based profile scanning approach for genome-wide prediction of signaling pathways.
    Nat Biotechnol, Vol. 19, No. 4. (April 2001), pp. 348-353.
    by MB Yaffe, GG Leparc, J Lai, T Obata, S Volinia, LC Cantley
    posted to no-tag by nknii on 2006-02-16 05:50:57 as ** along with 1 person and 1 group mloewer TCR_Signaling
  • Structure of MHC protein solved.
    Science, Vol. 238, No. 4827. (30 October 1987), pp. 613-614.
    by JL Marx
    posted to mhc by nknii on 2005-12-06 10:39:30 as ** along with 1 group TCR_Signaling
  • The design and implementation of the immune epitope database and analysis resource.
    Immunogenetics, Vol. 57, No. 5. (June 2005), pp. 326-336.
    by B Peters, J Sidney, P Bourne, HH Bui, S Buus, G Doh, W Fleri, M Kronenberg, R Kubo, O Lund, D Nemazee, JV Ponomarenko, M Sathiamurthy, SP Schoenberger, S Stewart, P Surko, S Way, S Wilson, A Sette
    posted to mhc_binding by nknii on 2005-12-06 06:37:44 as ** along with 1 group TCR_Signaling
  • Comparative genomics of major histocompatibility complexes.
    Immunogenetics, Vol. 56, No. 10. (January 2005), pp. 683-695.
    by J Kelley, L Walter, J Trowsdale
    posted to mhc by nknii on 2005-12-06 06:34:30 as ***** along with 1 person and 1 group jermth TCR_Signaling
  • Automated generation and evaluation of specific MHC binding predictive tools: ARB matrix applications.
    Immunogenetics, Vol. 57, No. 5. (June 2005), pp. 304-314.
    by HH Bui, J Sidney, B Peters, M Sathiamurthy, A Sinichi, KA Purton, BR Mothé, FV Chisari, DI Watkins, A Sette
    posted to epitope_prediction prediction_strategy by nknii on 2005-12-06 06:30:09 as ***** along with 1 person and 1 group beapen TCR_Signaling
  • Emerging principles for the recognition of peptide antigens by MHC class I molecules.
    Science, Vol. 257, No. 5072. (14 August 1992), pp. 927-934.
    by M Matsumura, DH Fremont, PA Peterson, IA Wilson
    posted to epitope_prediction mhc_binding by nknii on 2005-12-06 05:55:54 as ** along with 1 group TCR_Signaling
  • MHC tutorial text, MHC CLASS I
    posted to no-tag by nknii on 2005-12-06 05:51:26 as ***** along with 1 group TCR_Signaling
  • A Structure-Based Algorithm to Predict Potential Binding Peptides to MHC Molecules with Hydrophobic Binding Pockets
    Human Immunology, Vol. 58, No. 1. (November 1997), pp. 1-11.
    by Yael Altuvia, Alessandro Sette, John Sidney, Scott Southwood, Hanah Margalit
    posted to prediction_strategy by nknii on 2005-12-06 05:37:09 as ***** along with 1 person and 2 groups okarsligil Bioinformatics TCR_Signaling
  • Probing the role of packing specificity in protein design.
    Proc Natl Acad Sci U S A, Vol. 94, No. 19. (16 September 1997), pp. 10172-10177.
    by BI Dahiyat, SL Mayo
    posted to design protein rotamer by nknii on 2005-10-05 12:03:32 as ** along with 1 person and 1 group shuns TCR_Signaling
  • Automated design of the surface positions of protein helices.
    Protein Sci, Vol. 6, No. 6. (June 1997), pp. 1333-1337.
    by BI Dahiyat, DB Gordon, SL Mayo
    posted to design protein rotamer by nknii on 2005-10-05 12:02:14 as ** along with 1 person and 1 group lna TCR_Signaling
  • notes Protein design automation.
    Protein Sci, Vol. 5, No. 5. (May 1996), pp. 895-903.
    by BI Dahiyat, SL Mayo
    posted to rotamer by nknii on 2005-10-05 11:58:06 as ** along with 2 people and 1 group carlk shuns TCR_Signaling
  • Conformational analysis of the backbone-dependent rotamer preferences of protein sidechains.
    Nat Struct Biol, Vol. 1, No. 5. (May 1994), pp. 334-340.
    by RL Dunbrack, M Karplus
    posted to rotamer by nknii on 2005-10-05 11:32:08 as ** along with 3 people and 1 group jwm kazemi rsantana TCR_Signaling
  • Backbone-dependent Rotamer Library for Proteins Application to Side-chain Prediction
    Journal of Molecular Biology, Vol. 230, No. 2. (20 March 1993), pp. 543-574.
    by Jr Dunbrack, Martin Karplus
    posted to abs by nknii on 2005-10-05 11:28:42 as ** along with 2 people and 1 group jwm dgront TCR_Signaling
  • Backbone-dependent rotamer library for proteins. Application to side-chain prediction.
    J Mol Biol, Vol. 230, No. 2. (20 March 1993), pp. 543-574.
    by RL Dunbrack, M Karplus
    posted to rotamer by nknii on 2005-10-05 11:27:55 as ** along with 1 person and 1 group carlk TCR_Signaling
  • Bayesian statistical analysis of protein side-chain rotamer preferences.
    Protein Sci, Vol. 6, No. 8. (August 1997), pp. 1661-1681.
    by RL Dunbrack, FE Cohen
    posted to rotamer by nknii on 2005-10-05 11:25:10 as ** along with 10 people and 1 group jwm karbak j3xucite dgront blackbart kazemi rsantana hmk LamBras mijam TCR_Signaling
  • Side-chain flexibility in protein-ligand binding: the minimal rotation hypothesis.
    Protein Sci, Vol. 14, No. 4. (April 2005), pp. 1104-1114.
    by MI Zavodszky, LA Kuhn
    posted to rotamer by nknii on 2005-10-05 08:48:04 as ** along with 7 people and 2 groups BragilMassoud dgruiz yongzhao blackbart kazemi rsantana LamBras TCR_Signaling TSRI_MGL
  • Prediction of protein side-chain rotamers from a backbone-dependent rotamer library: a new homology modeling tool.
    J Mol Biol, Vol. 267, No. 5. (18 April 1997), pp. 1268-1282.
    by MJ Bower, FE Cohen, RL Dunbrack
    posted to rotamer by nknii on 2005-10-05 08:47:26 as ** along with 5 people and 1 group carlk jwm kaarsinogen blackbart mijam TCR_Signaling
  • Generalized dead-end elimination algorithms make large-scale protein side-chain structure prediction tractable: implications for protein design and structural genomics.
    J Mol Biol, Vol. 307, No. 1. (16 March 2001), pp. 429-445.
    by LL Looger, HW Hellinga
    posted to design protein by nknii on 2005-10-04 21:47:31 as **** along with 3 people and 1 group carlk dgront mijam TCR_Signaling
  • Computational method to reduce the search space for directed protein evolution.
    Proc Natl Acad Sci U S A, Vol. 98, No. 7. (27 March 2001), pp. 3778-3783.
    by CA Voigt, SL Mayo, FH Arnold, ZG Wang
    posted to no-tag by nknii on 2005-10-04 11:40:03 as *** along with 1 person and 1 group betainverse TCR_Signaling
  • notes Exponential Families
    Encyclopedia of Statistical Sciences
    by Barndorff-Nielsen
    posted to maths by nknii on 2005-10-04 11:21:33 as ** along with 2 people and 1 group brian yaroslavvb TCR_Signaling
  • Sequence variation in ligand binding sites in proteins.
    BMC Bioinformatics, Vol. 6, No. 1. (30 September 2005)
    by Thomas J Magliery, Lynne Regan
    posted to no-tag by nknii on 2005-10-04 10:31:52 as **** along with 1 group TCR_Signaling
  • Introduction to the random matrix theory: Gaussian Unitary Ensemble and beyond
    (7 Dec 2004)
    by Yan V Fyodorov
    posted to maths by nknii on 2005-10-04 08:08:41 as ** along with 2 people and 2 groups rahul RMT TCR_Signaling SRL
  • MHCPred: bringing a quantitative dimension to the online prediction of MHC binding.
    Appl Bioinformatics, Vol. 3, No. 1. (2003), pp. 63-66.
    by P Guan, IA Doytchinova, C Zygouri, DR Flower
    posted to epitope_prediction prediction_strategy by nknii on 2005-10-04 08:00:21 as ** along with 1 group TCR_Signaling
  • De novo backbone and sequence design of an idealized alpha/beta-barrel protein: evidence of stable tertiary structure.
    J Mol Biol, Vol. 325, No. 1. (3 January 2003), pp. 163-174.
    by F Offredi, F Dubail, P Kischel, K Sarinski, AS Stern, C Van de Weerdt, JC Hoch, C Prosperi, JM François, SL Mayo, JA Martial
    posted to design protein by nknii on 2005-10-04 07:51:17 as **** along with 1 group TCR_Signaling
  • Thermodynamic calculations in biological systems
    Biophysical Chemistry, Vol. In Press, Corrected Proof
    by Mario L Amzel, Xavier Siebert, Anthony Armstrong, German Pabon
    posted to thermodynamics by nknii on 2005-10-04 06:53:54 as **** along with 5 people and 3 groups barry pansapiens shuns imouthesmp ttjoseph structural_bioinformatics Bioinformatics TCR_Signaling
  • Hydroxyl Groups in the betabeta Sandwich of Metallo-beta-lactamases Favor Enzyme Activity: A Computational Protein Design Study.
    J Mol Biol (7 June 2005)
    by Peter Oelschlaeger, Stephen L L Mayo
    posted to design protein by nknii on 2005-10-04 06:51:30 as ** along with 1 person and 1 group shuns TCR_Signaling
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