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penka library [243 articles]

Статьи, недавно добавленные в библиотеку penka .
  • Intron Size and Exon Evolution in Drosophila
    posted to a_protein_evolution by penka on 2007-11-07 09:47:08 as **
  • Accurate Inference and Estimation in Population Genomics
    Molecular Biology and Evolution, Vol. 23, No. 5. (15 May 2006), pp. 911-918.
    by Matthew W Hahn
    posted to a_poly by penka on 2007-11-07 09:45:22 as **
  • Polymorphism in the alpha 1 helix of the HLA-B heavy chain can have an overriding influence on peptide-binding specificity
    J Immunol, Vol. 158, No. 4. (15 February 1997), pp. 1660-1669.
    by Ld Barber, L Percival, Kl Arnett, Je Gumperz, L Chen, P Parham
    posted to a_poly by penka on 2007-11-03 00:08:18 as **
  • Sequence Polymorphism, Predicted Secondary Structures, and Surface-Exposed Conformational Epitopes of Campylobacter Major Outer Membrane Protein
    Infect. Immun., Vol. 68, No. 10. (1 October 2000), pp. 5679-5689.
    by Qijing Zhang, Jerrel C Meitzler, Shouxiong Huang, Teresa Morishita
    posted to a_poly by penka on 2007-11-03 00:06:33 as **
  • Effect of secondary structure on single nucleotide polymorphism detection with a porous microarray matrix; implications for probe selection.
    Biotechniques, Vol. 34, No. 5. (May 2003)
    by RM Anthony, AR Schuitema, AB Chan, PJ Boender, PR Klatser, L Oskam
    posted to a_poly a_top by penka on 2007-11-02 23:08:35 as **
  • Tracking adaptive evolutionary events in genomic sequences
    Genome Biology, Vol. 3, No. 6. (2002), pp. reviews1018.1-reviews1018.4.
    by David Liberles, Marta Wayne
    posted to a_top by penka on 2007-11-01 10:14:04 as **
  • CJO - Abstract - Prediction of protein function from protein sequence and structure
    posted to a_goodinfo by penka on 2007-11-01 10:13:02 as **
  • The evolution of protein structures.
    Cold Spring Harb Symp Quant Biol, Vol. 52 (1987), pp. 399-405.
    by C Chothia, AM Lesk
    posted to a_new by penka on 2007-11-01 10:11:39 as ** along with 1 person and 2 groups marcius BioinfoCIPF SGU-CIPF
  • Protein structure prediction: inroads to biology.
    Mol Cell, Vol. 20, No. 6. (22 December 2005), pp. 811-819.
    by D Petrey, B Honig
    posted to a_goodinfo by penka on 2007-11-01 10:11:05 as ** along with 3 people and 2 groups vavi marcius Haggan BioinfoCIPF SGU-CIPF
  • A tour of structural genomics.
    Nat Rev Genet, Vol. 2, No. 10. (October 2001), pp. 801-809.
    by SE Brenner
    posted to a_goodinfo by penka on 2007-11-01 10:10:35 as ** along with 1 person and 2 groups marcius BioinfoCIPF SGU-CIPF
  • Introduction to informatics approaches in structural genomics: modeling and representation of function from macromolecular structure.
    Pac Symp Biocomput (2005), pp. 319-321.
    by PC Babbitt, PE Bourne, SD Mooney
    posted to a_new by penka on 2007-11-01 09:51:11 as ** along with 1 person and 2 groups marcius BioinfoCIPF SGU-CIPF
  • Structural genomics analysis of alternative splicing and application to isoform structure modeling.
    Proc Natl Acad Sci U S A (14 December 2005)
    by Peng Wang, Bo Yan, Jun-Tao T Guo, Chindo Hicks, Ying Xu
    posted to a_splicing a_structure a_top by penka on 2007-11-01 08:37:40 as ** along with 3 people and 2 groups Cortel shuns marcius BioinfoCIPF SGU-CIPF
  • Sequence evolution and the mechanism of protein folding.
    Biophys J, Vol. 79, No. 4. (October 2000), pp. 1787-1799.
    by AR Ortiz, J Skolnick
    posted to a_tertiary_evolution by penka on 2007-11-01 08:30:09 as ** along with 2 people and 2 groups marcius cjeans BioinfoCIPF SGU-CIPF
  • Protein stability imposes limits on organism complexity and speed of molecular evolution
    Proceedings of the National Academy of Sciences, Vol. 104, No. 41. (9 October 2007), pp. 16152-16157.
    by Konstantin B Zeldovich, Peiqiu Chen, Eugene I Shakhnovich
    posted to a_tertiary_evolution by penka on 2007-11-01 08:29:07 as ** along with 4 people operon cjeans cactus cdeane
  • Visible volume: a robust measure for protein structure characterization.
    J Mol Biol, Vol. 273, No. 1. (17 October 1997), pp. 338-348.
    by L Lo Conte, TF Smith
    posted to a_features by penka on 2007-11-01 08:23:30 as ** along with 1 person vavi
  • Introduction To Monte Carlo Algorithms
    (14 Nov 1998)
    by Werner Krauth
    edited by J Kertesz, Kondor
    posted to a_software by penka on 2007-11-01 08:20:14 as ** along with 8 people ansobol stephensalomons dgront gane5h rabio ujarmatokyaniv softsimu mijam
  • The Impact of Structural Genomics: Expectations and Outcomes
    Science, Vol. 311, No. 5759. (20 January 2006), pp. 347-351.
    by John-Marc Chandonia, Steven E Brenner
    posted to a_z_peripheral by penka on 2007-11-01 08:16:24 as ** along with 9 people and 2 groups tjimenez bicko balajis marcius tny anwazo dgront insectopalo selrac BioinfoCIPF SGU-CIPF
  • Site interdependence attributed to tertiary structure in amino acid sequence evolution
    Gene, Vol. 347, No. 2. (14 March 2005), pp. 207-217.
    by Nicolas Rodrigue, Nicolas Lartillot, David Bryant, Herve Philippe
    posted to a_tertiary_evolution by penka on 2007-11-01 08:14:01 as ** along with 1 person redelings
  • Assessing Site-Interdependent Phylogenetic Models of Sequence Evolution
    Mol Biol Evol, Vol. 23, No. 9. (1 September 2006), pp. 1762-1775.
    by Nicolas Rodrigue, Herve Philippe, Nicolas Lartillot
    posted to a_tertiary_evolution by penka on 2007-11-01 08:13:40 as ** along with 2 people redelings tale
  • Protein Evolution with Dependence Among Codons Due to Tertiary Structure
    Mol Biol Evol, Vol. 20, No. 10. (1 October 2003), pp. 1692-1704.
    by Douglas M Robinson, David T Jones, Hirohisa Kishino, Nick Goldman, Jeffrey L Thorne
    posted to a_tertiary_evolution by penka on 2007-11-01 08:12:49 as ** along with 2 people redelings tale
  • Protein stability promotes evolvability
    PNAS, Vol. 103, No. 15. (11 April 2006), pp. 5869-5874.
    by Jesse D Bloom, Sy T Labthavikul, Christopher R Otey, Frances H Arnold
    posted to a_z_peripheral by penka on 2007-11-01 08:10:56 as ** along with 10 people and 2 groups rklancer Retchless lna Einat cmm redelings BioNica Cristiano wilbur cdeane structural_bioinformatics FAB-lab
  • Recoverable one-dimensional encoding of protein three-dimensional structures.
    Bioinformatics (18 February 2005)
    by Akira R R Kinjo, Ken Nishikawa
    posted to a_z_peripheral by penka on 2007-11-01 08:08:18 as ** along with 4 people and 2 groups karbak ana barry mtw structural_bioinformatics Bioinformatics
  • EVA: Evaluation of protein structure prediction servers.
    Nucleic Acids Res, Vol. 31, No. 13. (1 July 2003), pp. 3311-3315.
    by IY Koh, VA Eyrich, MA Marti-Renom, D Przybylski, MS Madhusudhan, N Eswar, O Graña, F Pazos, A Valencia, A Sali, B Rost
    posted to a_software a_top by penka on 2007-11-01 08:07:01 as ** along with 2 people and 2 groups marcius dgront BioinfoCIPF SGU-CIPF
  • Protein structure modeling for structural genomics.
    Nat Struct Biol, Vol. 7 Suppl (November 2000), pp. 986-990.
    by R Sánchez, U Pieper, F Melo, N Eswar, MA Martí-Renom, MS Madhusudhan, N Mirković, A Sali
    posted to a_z_peripheral by penka on 2007-11-01 08:05:21 as ** along with 2 people and 2 groups marcius dgront BioinfoCIPF SGU-CIPF
  • RNA structure: experimental analysis.
    Curr Opin Microbiol (24 May 2007)
    by Brice Felden
    posted to a_goodinfo by penka on 2007-11-01 08:03:19 as ** along with 3 people and 2 groups marcius emidio_capriotti debatebob BioinfoCIPF SGU-CIPF
  • On the relationship between sequence and structure similarities in proteomics
    Bioinformatics, Vol. 23, No. 6. (15 March 2007), pp. 717-723.
    by K Evgeny
    posted to a_rna_evolution a_top by penka on 2007-11-01 08:01:42 as ** along with 1 person and 2 groups marcius BioinfoCIPF SGU-CIPF
  • Quantifying the Impact of Protein Tertiary Structure on Molecular Evolution
    Mol Biol Evol (23 May 2007), msm097.
    by Sang C Choi, Asger Hobolth, Douglas M Robinson, Hirohisa Kishino, Jeffrey L Thorne
    posted to a_tertiary_evolution by penka on 2007-11-01 07:58:40 as ** along with 1 person zwang
  • Three distinct modes of intron dynamics in the evolution of eukaryotes.
    Genome Res (10 May 2007)
    by Liran Carmel, Yuri I I Wolf, Igor B B Rogozin, Eugene V V Koonin
    posted to introns1 by penka on 2007-11-01 07:57:56 as ** along with 6 people and 3 groups dchughes djkt jwestbrook lilou cabbagezs seitentaisei G4ID King_Lab Genetics-of-Gambling
  • RADAR: a web server for RNA data analysis and research.
    Nucleic Acids Res, Vol. 35, No. Web Server issue. (1 July 2007)
    by M Khaladkar, V Bellofatto, JT Wang, B Tian, BA Shapiro
    posted to a_software by penka on 2007-11-01 07:55:45 as ** along with 2 people austin jyuh
  • A practical guide to the art of RNA gene prediction
    Brief Bioinform (4 May 2007), bbm011.
    by Irmtraud M Meyer
    posted to a_goodinfo by penka on 2007-11-01 07:51:41 as ** along with 4 people xingxu wenhan GustavoLacerda xili03
  • RNA Sequence Evolution With Secondary Structure Constraints: Comparison of Substitution Rate Models Using Maximum-Likelihood Methods
    Genetics, Vol. 157, No. 1. (1 January 2001), pp. 399-411.
    by Nicholas J Savill, David C Hoyle, Paul G Higgs
    posted to a_rna_evolution by penka on 2007-11-01 07:50:59 as ** along with 3 people and 4 groups marcius condon i000 beta BioinfoCIPF SGU-CIPF YY1
  • Selection Intensity Against Deleterious Mutations in RNA Secondary Structures and Rate of Compensatory Nucleotide Substitutions
    Genetics, Vol. 159, No. 1. (1 September 2001), pp. 389-399.
    by Hideki Innan, Wolfgang Stephan
    posted to a_rna_evolution by penka on 2007-11-01 07:49:39 as **
  • Compensatory evolution of a precursor messenger RNA secondary structure in the Drosophila melanogaster Adh gene
    Proceedings of the National Academy of Sciences, Vol. 100, No. 20. (30 September 2003), pp. 11499-11504.
    by Ying Chen, Wolfgang Stephan
    posted to a_12dros by penka on 2007-11-01 07:48:47 as **
  • Phylogenetic estimation of context-dependent substitution rates by maximum likelihood.
    Mol Biol Evol, Vol. 21, No. 3. (March 2004), pp. 468-488.
    by A Siepel, D Haussler
    posted to a_rna_evolution by penka on 2007-11-01 07:47:38 as ** along with 4 people mdimmic djkt tale uwe
  • Natural selection is not required to explain universal compositional patterns in rRNA secondary structure categories.
    RNA, Vol. 12, No. 1. (January 2006), pp. 1-14.
    by S Smit, M Yarus, R Knight
    posted to a_rna_evolution a_top by penka on 2007-11-01 07:43:21 as ** along with 2 people and 1 group i000 debatebob YY1
  • Evolutionary Analyses of DNA Sequences Subject to Constraints on Secondary Structure
    Genetics, Vol. 139, No. 3. (1 March 1995), pp. 1429-1439.
    by SV Muse
    posted to a_rna_evolution by penka on 2007-11-01 07:40:54 as **
  • Evolutionary rates vary among rRNA structural elements
    Nucl. Acids Res., Vol. 35, No. 10. (11 May 2007), pp. 3339-3354.
    by S Smit, J Widmann, R Knight
    posted to a_rna_structure a_top by penka on 2007-11-01 07:08:45 as ** along with 5 people and 3 groups marcius eckart_bindewald balicea i000 cjeans BioinfoCIPF SGU-CIPF YY1
  • Deleterious SNP prediction: be mindful of your training data!
    Bioinformatics, Vol. 23, No. 6. (15 March 2007), pp. 664-672.
    by Care, A Matthew, Needham, J Chris, Bulpitt, J Andrew, Westhead, R David
    posted to a_snp by penka on 2007-11-01 07:01:53 as ** along with 2 people and 2 groups marcius Yumyai BioinfoCIPF SGU-CIPF
  • RNAs everywhere: genome-wide annotation of structured RNAs.
    J Exp Zoolog B Mol Dev Evol (14 December 2006)
    by Rolf Backofen, Stephan H H Bernhart, Christoph Flamm, Claudia Fried, Guido Fritzsch, Jörg Hackermüller, Jana Hertel, Ivo L L Hofacker, Kristin Missal, Axel Mosig, Sonja J J Prohaska, Dominic Rose, Peter F F Stadler, Andrea Tanzer, Stefan Washietl, Sebastian Will
    posted to a_z_peripheral by penka on 2007-11-01 06:59:54 as ** along with 11 people and 5 groups jfr bala marcius eckart_bindewald tardigrade andersbj cdawson ilh raylim jayster4 maralena microRNA BioinfoCIPF SGU-CIPF DictyosteliumGroup GIG
  • A comprehensive comparison of comparative RNA structure prediction approaches.
    BMC Bioinformatics, Vol. 5, No. 1. (30 September 2004)
    by PP Gardner, R Giegerich
    posted to a_rna_structure_prediction_check a_software by penka on 2007-11-01 06:50:35 as ** along with 7 people and 3 groups evaf austin marcius andersbj arcticrasta Hosna Carnegie microRNA BioinfoCIPF SGU-CIPF
  • Revolutions in RNA Secondary Structure Prediction
    Journal of Molecular Biology, Vol. 359, No. 3. (9 June 2006), pp. 526-532.
    by David H Mathews
    posted to a_goodinfo a_rna_structure_prediction_check by penka on 2007-11-01 06:48:10 as ** along with 8 people and 2 groups winterschlaefer marcius arcticrasta Eonwe cthachuk emidio_capriotti physics maralena BioinfoCIPF SGU-CIPF
  • CONTRAfold: RNA secondary structure prediction without physics-based models.
    Bioinformatics, Vol. 22, No. 14. (15 July 2006)
    by CB Do, DA Woods, S Batzoglou
    posted to a_rna_structure_prediction_check a_top by penka on 2007-11-01 06:47:01 as ** along with 5 people and 3 groups balajis marcius tardigrade condon acarbo beta BioinfoCIPF SGU-CIPF
  • RNA secondary structure: physical and computational aspects.
    Q Rev Biophys, Vol. 33, No. 3. (August 2000), pp. 199-253.
    by PG Higgs
    posted to a_goodinfo a_rna_structure_prediction_check a_top by penka on 2007-11-01 06:43:50 as ** along with 2 people and 2 groups marcius arcticrasta BioinfoCIPF SGU-CIPF
  • Statistical and Bayesian approaches to RNA secondary structure prediction.
    RNA, Vol. 12, No. 3. (March 2006), pp. 323-331.
    by Y Ding
    posted to a_rna_structure_prediction_check by penka on 2007-11-01 06:37:25 as ** along with 6 people and 3 groups marcius arcticrasta condon Hosna physics Kiarostami beta BioinfoCIPF SGU-CIPF
  • Calculating nucleic acid secondary structure.
    Curr Opin Struct Biol, Vol. 10, No. 3. (June 2000), pp. 303-310.
    by M Zuker
    posted to a_rna_structure_prediction_check by penka on 2007-11-01 06:36:28 as ** along with 2 people and 2 groups marcius arcticrasta BioinfoCIPF SGU-CIPF
  • Dictionary of protein secondary structure: pattern recognition of hydrogen-bonded and geometrical features
    Biopolymers, Vol. 22, No. 12. (December 1983), pp. 2577-2637.
    by W Kabsch, C Sander
    posted to a_goodinfo a_rna_structure_prediction_check by penka on 2007-11-01 06:27:31 as ** along with 13 people kaarsinogen lna chad_davis wouterboomsma ffranca dgront choonpeng leelarcombe rabio gisle medic0747 martainn chgjb
  • Prediction in 1D: secondary structure, membrane helices, and accessibility.
    Methods Biochem Anal, Vol. 44 (2003), pp. 559-587.
    by B Rost
    posted to a_rna_structure_prediction_check a_top by penka on 2007-11-01 06:22:04 as ** along with 1 person and 2 groups marcius BioinfoCIPF SGU-CIPF
  • RNAshapes: an integrated RNA analysis package based on abstract shapes
    Bioinformatics, Vol. 22, No. 4. (15 February 2006), pp. 500-503.
    by Peter Steffen, Bjorn Vosharp, Marc Rehmsmeier, Jens Reeder, Robert Giegerich
    posted to a_rna_structure_prediction_check by penka on 2007-11-01 06:15:36 as ** along with 2 people and 2 groups marcius Hosna BioinfoCIPF SGU-CIPF
  • Structural analysis of aligned RNAs
    Nucleic Acids Research, Vol. 34, No. 19. (November 2006), pp. 5471-5481.
    by Vosharp, Bjorn
    posted to a_rna_structure_prediction_check by penka on 2007-11-01 06:13:34 as **
  • The evolution of gene regulation by transcription factors and microRNAs
    Nat Rev Genet, Vol. 8, No. 2. (February 2007), pp. 93-103.
    by Kevin Chen, Nikolaus Rajewsky
    posted to z_gene_regulation by penka on 2007-01-23 22:47:41 as ** along with 18 people and 4 groups bootsy aprasad jfr indigoviolet tardigrade andersbj dchughes emilyhare cdawson aswin plofje dbikard joepickrell Garamonfok EeHawk3 jayster4 dandaman maralena EisenLab microRNA Nie GIG
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