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penka library [243 articles]

Статьи, недавно добавленные в библиотеку penka library ordered by importance.
  • Distant conserved sequences flanking endothelial-specific promoters contain tissue-specific DNase-hypersensitive sites and over-represented motifs
    Human Molecular Genetics, Vol. 15, No. 13. (1 July 2006), pp. 2098-2105.
    by Bernat, A John, Crawford, E Gregory, Ogurtsov, Y Aleksey, Collins, S Francis, Ginsburg, David, Kondrashov, S Alexey
    posted to introns_conserved_seqs by penka on 2006-08-18 11:45:03 as ***** along with 1 group Nie
  • Intrinsically unstructured proteins and their functions
    Nature Reviews Molecular Cell Biology, Vol. 6, No. 3. (01 March 2005), pp. 197-208.
    by Jane J Dyson, Peter E Wright
    posted to a_protein_evolution by penka on 2006-06-04 03:11:53 as ***** along with 2 people and 1 group chad_davis cactus Nie
  • notes Worm genomes hold the smoking guns of intron gain.
    Proc Natl Acad Sci U S A, Vol. 101, No. 31. (3 August 2004), pp. 11195-11196.
    by JM Logsdon
    posted to introns by penka on 2006-05-02 00:02:06 as ***** along with 1 group Nie
  • Origins of recently gained introns in Caenorhabditis.
    Proc Natl Acad Sci U S A, Vol. 101, No. 31. (3 August 2004), pp. 11362-11367.
    by A Coghlan, KH Wolfe
    posted to x_elegans by penka on 2006-05-01 23:45:35 as ***** along with 1 group Nie
  • X chromosomes and autosomes evolve at similar rates in Drosophila: No evidence for faster-X protein evolution.
    Genome Res (6 March 2006)
    by Kevin Thornton, Doris Bachtrog, Peter Andolfatto
    posted to pxas by penka on 2006-04-09 23:36:41 as ***** along with 1 person and 2 groups indigoviolet EisenLab Nie
  • A Genome-Wide Departure From the Standard Neutral Model in Natural Populations of Drosophila
    Genetics, Vol. 156, No. 1. (1 September 2000), pp. 257-268.
    by Peter Andolfatto, Molly Przeworski
    posted to z_no-tag by penka on 2006-04-04 06:57:35 as ***** along with 1 group Nie
  • Orthologs, paralogs, and evolutionary genomics.
    Annu Rev Genet, Vol. 39 (2005), pp. 309-338.
    by EV Koonin
    posted to pas by penka on 2006-03-19 11:36:41 as ***** along with 6 people and 3 groups cerca BioNica fhsantanna aprasad dchughes jdiezperezj Nie G4ID Genetics-of-Gambling
  • Sexual and Temporal Dynamics of Molecular Evolution in C. elegans Development
    Mol Biol Evol, Vol. 22, No. 1. (1 January 2005), pp. 178-188.
    by Asher D Cutter, Samuel Ward
    posted to x_elegans by penka on 2006-03-19 10:39:53 as ***** along with 1 group Nie
  • A Pseudohitchhiking Model of X vs. Autosomal Diversity
    Genetics, Vol. 168, No. 4. (1 December 2004), pp. 2261-2269.
    by Andrea J Betancourt, Yuseob Kim, Allen H Orr
    posted to pas by penka on 2006-03-19 10:30:39 as ***** along with 1 group Nie
  • Rapid Divergence of Gene Duplicates on the Drosophila melanogaster X Chromosome
    Mol Biol Evol, Vol. 19, No. 6. (1 June 2002), pp. 918-925.
    by Kevin Thornton, Manyuan Long
    posted to x_drosophila by penka on 2006-03-19 10:25:52 as ***** along with 1 group Nie
  • Paucity of Genes on the Drosophila X Chromosome Showing Male-Biased Expression
    Science, Vol. 299, No. 5607. (31 January 2003), pp. 697-700.
    by Michael Parisi, Rachel Nuttall, Daniel Naiman, Gerard Bouffard, James Malley, Justen Andrews, Scott Eastman, Brian Oliver
    posted to psa by penka on 2006-03-19 10:15:24 as ***** along with 1 group Nie
  • Reduced X-linked nucleotide polymorphism in Drosophila simulans
    PNAS, Vol. 97, No. 11. (23 May 2000), pp. 5960-5965.
    by David J Begun, Penn Whitley
    posted to pas by penka on 2006-03-19 10:12:02 as ***** along with 1 group Nie
  • Using comparative genomic data to test for fast-X evolution.
    Evolution Int J Org Evolution, Vol. 58, No. 3. (March 2004), pp. 656-660.
    by BA Counterman, D Ortíz-Barrientos, MA Noor
    posted to psa by penka on 2006-03-19 09:53:00 as ***** along with 1 group Nie
  • Adaptation shapes patterns of genome evolution on sexual and asexual chromosomes in Drosophila
    Nat Genet, Vol. 34, No. 2. (June 2003), pp. 215-219.
    by Doris Bachtrog
    posted to psa by penka on 2006-03-19 09:47:42 as ***** along with 1 group Nie
  • A data-driven clustering method for time course gene expression data
    Nucleic Acids Research, Vol. 34, No. 4. (2006), pp. 1261-1269.
    by Ping Ma, Cristian I Castillo-Davis, Wenxuan Zhong, Jun S Liu
    posted to x_drosophila by penka on 2006-03-19 09:38:54 as ***** along with 2 people and 1 group paszkows jo_davies Nie
  • Reduced Variation on the Chicken Z Chromosome
    Genetics, Vol. 167, No. 1. (1 May 2004), pp. 377-385.
    by Hannah Sundstrom, Matthew T Webster, Hans Ellegren
    posted to psa by penka on 2006-03-19 09:28:47 as ***** along with 1 group Nie
  • Comparing protein abundance and mRNA expression levels on a genomic scale.
    Genome Biol, Vol. 4, No. 9. (2003)
    by D Greenbaum, C Colangelo, K Williams, M Gerstein
    posted to read_next by penka on 2006-03-15 05:41:52 as ***** along with 3 people and 1 group ihpark JeremyZucker roys Nie
  • Protein folding and misfolding
    Nature, Vol. 426, No. 6968. (18 December 2003), pp. 884-890.
    by Christopher M Dobson
    posted to z_theory by penka on 2006-03-14 08:40:06 as ***** along with 5 people and 1 group allmensch choonpeng anyscientist dougjoemartin Ema Nie
  • MISSENSE MEANDERINGS IN SEQUENCE SPACE: A BIOPHYSICAL VIEW OF PROTEIN EVOLUTION
    Nat Rev Genet, Vol. 6, No. 9. (2005), pp. 678-687.
    by Mark A Depristo, Daniel M Weinreich, Daniel L Hartl
    posted to a_bio113paper by penka on 2006-03-13 09:29:30 as ***** along with 1 person and 1 group mingzhi Nie
  • The Effect of Multifunctionality on the Rate of Evolution in Yeast
    Mol Biol Evol, Vol. 23, No. 4. (1 April 2006), pp. 721-722.
    by Marcel Salathe, Martin Ackermann, Sebastian Bonhoeffer
    posted to a_bio113paper by penka on 2006-03-13 03:39:15 as ***** along with 1 person and 2 groups stevanspringer Nie FAB-lab
  • Multilocus patterns of nucleotide variability and the demographic and selection history of Drosophila melanogaster populations.
    Genome Res, Vol. 15, No. 6. (June 2005), pp. 790-799.
    by PR Haddrill, KR Thornton, B Charlesworth, P Andolfatto
    posted to pxas read_next by penka on 2006-03-08 12:32:05 as ***** along with 2 people and 1 group apostola mimulus_99 Nie
  • High-Diversity Genes in the Arabidopsis Genome
    Genetics, Vol. 170, No. 4. (1 August 2005), pp. 1897-1911.
    by Jennifer M Cork, Michael D Purugganan
    posted to z_balanced_selection by penka on 2006-03-08 12:05:18 as ***** along with 1 group Nie
  • Molecular Population Genetics and the Search for Adaptive Evolution in Plants
    Molecular Biology and Evolution, Vol. 22, No. 3. (March 2005), pp. 506-519.
    by Stephen I Wright, Brandon S Gaut
    posted to z_methods by penka on 2006-03-08 11:48:21 as ***** along with 2 people and 1 group timflutre ArtemPankin Nie
  • A highly unexpected strong correlation between fixation probability of nonsynonymous mutations and mutation rate
    Trends in Genetics, Vol. In Press, Corrected Proof
    by Gerald J Wyckoff, Christine M Malcom, Eric J Vallender, Bruce T Lahn
    posted to a_bio113paper by penka on 2006-02-22 06:33:37 as ***** along with 5 people and 1 group shoshin bjorns aprasad JAShapiro balajis Nie
  • A Single Determinant Dominates the Rate of Yeast Protein Evolution.
    Mol Biol Evol (19 October 2005)
    by D Allan A Drummond, Alpan Raval, Claus O O Wilke
    posted to a_bio113paper by penka on 2006-02-08 07:23:19 as ***** along with 2 people and 1 group bjorns jpoyatos Nie
  • Intron evolution as a population-genetic process.
    Proc Natl Acad Sci U S A, Vol. 99, No. 9. (30 April 2002), pp. 6118-6123.
    by M Lynch
    posted to introns1 by penka on 2006-08-17 09:45:44 as **** along with 1 group Nie
  • Widespread occurrence of antisense transcription in the human genome.
    Nat Biotechnol, Vol. 21, No. 4. (April 2003), pp. 379-386.
    by R Yelin, D Dahary, R Sorek, EY Levanon, O Goldstein, A Shoshan, A Diber, S Biton, Y Tamir, R Khosravi, S Nemzer, E Pinner, S Walach, J Bernstein, K Savitsky, G Rotman
    posted to x_human by penka on 2006-06-04 09:19:39 as **** along with 2 people and 1 group mtagaya saru Nie
  • notes Mystery of intron gain.
    Genome Res, Vol. 13, No. 10. (October 2003), pp. 2236-2241.
    by A Fedorov, S Roy, L Fedorova, W Gilbert
    posted to introns by penka on 2006-05-01 23:48:20 as **** along with 1 group Nie
  • Conservation versus parallel gains in intron evolution.
    Nucleic Acids Res, Vol. 33, No. 6. (2005), pp. 1741-1748.
    by AV Sverdlov, IB Rogozin, VN Babenko, EV Koonin
    posted to z_orthologs by penka on 2006-05-01 23:40:20 as **** along with 1 group Nie
  • notes Prevalence of intron gain over intron loss in the evolution of paralogous gene families.
    Nucleic Acids Res, Vol. 32, No. 12. (2004), pp. 3724-3733.
    by VN Babenko, IB Rogozin, SL Mekhedov, EV Koonin
    posted to introns by penka on 2006-05-01 23:37:45 as **** along with 1 person and 1 group miniprep Nie
  • Patterns of intron sequence evolution in Drosophila are dependent upon length and GC content.
    Genome Biol, Vol. 6, No. 8. (2005)
    by PR Haddrill, B Charlesworth, DL Halligan, P Andolfatto
    posted to x_drosophila by penka on 2006-05-01 23:21:54 as **** along with 2 people and 2 groups lilou cisevol Nie cis-regulatory-evolution
  • Selective constraints on intron evolution in Drosophila.
    Genetics, Vol. 165, No. 4. (December 2003), pp. 1843-1851.
    by J Parsch
    posted to x_drosophila by penka on 2006-05-01 23:20:51 as **** along with 1 group Nie
  • Genomic sequence, splicing, and gene annotation.
    Am J Hum Genet, Vol. 67, No. 4. (October 2000), pp. 788-792.
    by SM Mount
    posted to introns by penka on 2006-05-01 23:15:03 as **** along with 1 group Nie
  • PLoS Computational Biology: Large-Scale Trends in the Evolution of Gene Structures within 11 Animal Genomes
    PLoS Comput Biol, Vol. 2, No. 3. (2006), e15.
    by Yandell
    posted to introns by penka on 2006-05-01 22:44:11 as **** along with 1 person and 1 group brixtonmc Nie
  • Genomic Background Predicts the Fate of Duplicated Genes: Evidence From the Yeast Genome
    Genetics, Vol. 166, No. 4. (1 April 2004), pp. 1995-1999.
    by Ze Zhang, Hirohisa Kishino
    posted to z_duplicate_genes by penka on 2006-03-19 10:42:22 as **** along with 1 group Nie
  • Genomic Background Drives the Divergence of Duplicated Amylase Genes at Synonymous Sites in Drosophila
    Mol Biol Evol, Vol. 21, No. 2. (1 February 2004), pp. 222-227.
    by Ze Zhang, Hirohisa Kishino
    posted to z_duplicate_genes by penka on 2006-03-19 10:41:35 as **** along with 1 group Nie
  • A Test for Faster X Evolution in Drosophila
    Mol Biol Evol, Vol. 19, No. 10. (1 October 2002), pp. 1816-1819.
    by Andrea J Betancourt, Daven C Presgraves, Willie J Swanson
    posted to pas by penka on 2006-03-19 10:26:14 as **** along with 1 group Nie
  • Protein Variation in Drosophila simulans, and Comparison of Genes from Centromeric Versus Noncentromeric Regions of Chromosome 3
    Mol Biol Evol, Vol. 19, No. 2. (1 February 2002), pp. 201-203.
    by David J Begun
    posted to pas by penka on 2006-03-19 10:24:03 as **** along with 1 group Nie
  • The lack of recombination drives the fixation of transposable elements on the fourth chromosome of Drosophila melanogaster.
    Genet Res, Vol. 83, No. 2. (April 2004), pp. 91-100.
    by C Bartolomé, X Maside
    posted to x_dpse by penka on 2006-03-19 10:06:28 as **** along with 1 group Nie
  • Evolution under tight linkage to mating type
    New Phytologist, Vol. 165, No. 1., 63.
    by Marcy K Uyenoyama
    posted to psa by penka on 2006-03-19 09:57:11 as **** along with 1 group Nie
  • Evolutionary Conservation of Expression Profiles Between Human and Mouse Orthologous Genes
    Molecular Biology and Evolution, Vol. 23, No. 3. (March 2006), pp. 530-540.
    by Ben-Yang Liao, Jianzhi Zhang
    posted to psa by penka on 2006-03-19 09:34:30 as **** along with 2 people and 1 group cjeans gjuggler Nie
  • Molecular Evolution of Sex-Biased Genes in Drosophila
    Mol Biol Evol, Vol. 21, No. 11. (1 November 2004), pp. 2130-2139.
    by Zhi Zhang, Tina M Hambuch, John Parsch
    posted to psa by penka on 2006-03-19 09:30:26 as **** along with 1 person and 1 group RMGraze Nie
  • Global analysis of X-chromosome dosage compensation
    Journal of Biology, Vol. 5, No. 1. (16 February 2006), 3.
    by Vaijayanti Gupta, Michael Parisi, David Sturgill, Rachel Nuttall, Michael Doctolero, Olga K Dudko, James D Malley, Scott P Eastman, Brian Oliver
    posted to psa pxas_dc x by penka on 2006-03-19 09:18:42 as **** along with 1 group Nie
  • Genome-wide variation in the human and fruitfly: a comparison
    Current Opinion in Genetics & Development, Vol. 11, No. 6. (1 December 2001), pp. 627-634.
    by Charles F Aquadro, Bauer, Floyd A Reed
    posted to read_next by penka on 2006-03-08 12:36:59 as **** along with 1 group Nie
  • POPULATION GENOMICS: Genome-Wide Sampling of Insect Populations
    Annual Review of Entomology, Vol. 46, No. 1. (January 2001), pp. 441-469.
    by William
    posted to read_next by penka on 2006-03-08 12:19:34 as **** along with 1 group Nie
  • THE POWER AND PROMISE OF POPULATION GENOMICS: FROM GENOTYPING TO GENOME TYPING
    Nat Rev Genet, Vol. 4, No. 12. (December 2003), pp. 981-994.
    by Gordon Luikart, Phillip R England, David Tallmon, Steve Jordan, Pierre Taberlet
    posted to read_next by penka on 2006-03-08 12:11:27 as **** along with 1 group Nie
  • Chromatin remodeling in dosage compensation.
    Annu Rev Genet, Vol. 39 (2005), pp. 615-651.
    by JC Lucchesi, WG Kelly, B Panning
    posted to z_dosage_compensation by penka on 2006-02-25 02:31:11 as **** along with 1 group Nie
  • Positive Correlation Between Evolutionary Rate and Recombination Rate in <it>Drosophila</it> Genes with Male-Biased Expression
    Molecular Biology and Evolution, Vol. 22, No. 10. (October 2005), pp. 1945-1947.
    by Zhi Zhang, John Parsch
    posted to a_bio113paper_q by penka on 2006-02-24 10:09:49 as **** along with 1 group Nie
  • Retroposed new genes out of the X in Drosophila.
    Genome Res, Vol. 12, No. 12. (December 2002), pp. 1854-1859.
    by E Betrán, K Thornton, M Long
    posted to pxas x by penka on 2006-02-24 10:08:39 as **** along with 2 people and 1 group clearbluespring ushishir Nie
  • Gene essentiality and the topology of protein interaction networks.
    Proc Biol Sci, Vol. 272, No. 1573. (22 August 2005), pp. 1721-1725.
    by S Coulomb, M Bauer, D Bernard, MC Marsolier-Kergoat
    posted to a_bio113paper by penka on 2006-02-22 09:27:39 as **** along with 1 person and 1 group Takayuki Nie
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