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rdiaz library [270 articles]

Статьи, недавно добавленные в библиотеку rdiaz library ordered by importance.
  • notes Integrating copy number polymorphisms into array CGH analysis using a robust HMM.
    Bioinformatics, Vol. 22, No. 14. (15 July 2006)
    by SP Shah, X Xuan, RJ Deleeuw, M Khojasteh, WL Lam, R Ng, KP Murphy
  • Standards for systems biology
    Nature Reviews Genetics, Vol. 7, No. 8. (2006), pp. 593-605.
    by Alvis Brazma, Maria Krestyaninova, Ugis Sarkans
  • notes Reader's reaction to "Dimension Reduction for Classification with Gene Expression Microarray Data" by Dai et al (2006)
    Statistical Applications in Genetics and Molecular Biology
    by Anne-Laure Boulesteix
    posted to no-tag by rdiaz on 2006-07-13 09:20:08 as ***** along with 725 people and 134 groups dlobo fernand0 dperkel egh jyuh samth sora florine ladygoat hopm hellige parmentierf ssn mortimer tinkha V plaugg ansobol mjaz berthelemy eldan pdlug zephoria carloscabanillas Janos bkliethermes nazareno elsantosneto januadiaboli yaroslavvb jurijmlotman geomblog srl bigga treycausey CSG mcphee chandrashekar denns matzke sherrivokey sona cassj lijil hlovise coolger incites bigmagpie alicetiara yorgos johannsen cavlec smbrower viller jenmy mlzafron tymmail sedging davidr macowell eimaj42jdp Flit BenWillems agallet hawesie sngourlay jolilius rmagf acer ville garyfeng danifazzio willwade gantlord melanieramage mgregg cwb neteler carneym crispinb rdlong lillekatt davemack agarza carsonr imcdnzl tjimenez Tolik lna dmikurube szityu michmill P2324548 jpbenda Vaccine tadm mkwalker anar grzegorz japple planetoid okarsligil stormybriggs UWerplab nbr inbetweener pafmon stina pgastrein xiruela kutabar jfr xamde kliether mleis jshahin cmunson lfriedl sharonhoward ccots terraces czlamer brent_lance subhradeep jjray Jellyfish cmmorel bayesian benavides ghsalazar manuelpq sekulerlab jmaryott kristina chad_davis Ayest thens RMGraze e2holmes JAShapiro contradictoryben lrodero jamesfournie nybon hawkestein diegolino_veneziano rvosa Schmidtc lyongu ricmilne KarinaFigueroa jfmenudet cdmilligan great_apes brthz juliajumeau gloinf billwolff mrkrause halsnalle pintman yish mkcerusky cyph3r idm smithco ruudvanleeuwen BarrosH aelva harshpshah earnoux princessbritty Laki kupopo ryang eustatic daqing stain matts ram frankgrimes Pfaff9 locatellimp seawidget ianli kate_waxlyrical rherring ThomasEtEckert cliona shaun gregnishihara harmonjt Happybene jklugman mwyarbro rburnett prabakaran nperrin tystl gugek NicolasNeubauer gytisc Nele pedagogicapprentice dlouzeck phillipkent emerson rafamayo arichar6 pasion sadsackmac gbae redcourgette sunilbajpai JJNonesuch heintz BuckeyePhysicist bretblosser charlesijones term madhadron ypeter cmm agraham yijisoo jberro peaksun balabu djsaab crumj garypearce rinelk plashkes PaulB charlescearl p2p-sec langec tuaba os252 JonathanFeinberg jingliu dvoigt hywel tshr dgront isorhiza foistudy jenine donade kmcolo fisherp voiklis insilico fitzgeraldsteele junoda sumeetonweb familydoc craigtalbert dmitri83 dmboyer martint RalphPutnam atsu-kan hlwoodcock reta gogabr smmurphy rafabravo dabhishe JennaW hisashim cjones chuggins Sulpicus ranb alikocho hiromark gane5h l-alex pilho ueberweise wangsd echinotrix ak Odi bezbozhnik todchambers perceptron wasteland93 yizheng stephane-jean mahlow mbaric mtr anon_pl dir289 lanubile fcalefato dpeeler QFRMC xwenlong johncumbers kgronemyer keitokita hkl pervane mpennell kedmond mfisk brusilovsky gregflanders hgamboa pgeymueller last5laps jbrown nathanielvirgo rwm101 ChristianGraf marohn davetown101 barbz79it naturecure edgarbc muellerkind fugitive joshuashen aviad_work crusher lucbelanger lauragonzalez Manhal 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ibschwartz srfairclough joepickrell bouchard islandrru hohkhkh1 alchemyst mlewcio irwink henriksdal cychang padraic trshepherd tarjeiha josemblazquez pitzelberger hukkinen toppi sjc garancher_gougeon_reyotero nmaisonneuve powell digamberjuwekar cmcleod grieth isys1186 aartaki polyparadigm rodney portalqm bangb cdm jeanfou CareyNadell teh zwang shivakmr prerona michaelmampaey mick39 dagmar bellia kevin7 friveroll khm zetetic karipuf leechuck hp2oo1 jenda_z ngrandy andreacapocci ghunter Maderlock shizhao dayadvham monientiedt rebeccamancy calamar c-gobert baniel jborn dmschneid tale chrisatcite mloewer hanxiansheng rlai jasonbobe ggorjan zeppe AlisonBabeu eprzekwa J_Raff fornstar yodha Akimasa technical oilpalm spacely j0nes TCgroup ingedwar Oktoplus stonest cwr jladell rbmoura Leize adjih carpi omidf2 msampson olaf markusd paulschlesinger qwermish librain pkrrules thehajime PeterRabbit paulvb cvq peefeeyatko kinestetika lynleypage truongducthang metaspencer dodger042 jpassoth krokicki tibbitts brianlimyl vogmae doylem wongmld nkishan hayko gjhuang ashko buggle bemike cvarnam jakobl umurthy21 andregermanoregert Katje tgyork ivanois toivotuo jnz snyder84 idonaldson dandaman awc Thaverkamp mtugrul buchgeher fairy mebiel lectorespa bennettn waszak forestier claudiotubertini acastaner hkreysa AnneB GimpyBee sgclendenon paj prdrieze cortex rschulz aklassen kenneth1ny nschaeff japarejo andreacastelletti schocol hillarpoldmaa kcrawlik ipora yavanna Grobi s-fujii kdesmond bjbecerra ziggy talkingpoints linxiang mllee monkare pantxorama petergun6666 iantunbridge farzanehs mpisarenco blackm0k bluecricket mrosenki eisenmaj BrianTomasik adamsi schulz iup massimocencini natasjadenouden nickpitman genericg dmmarinlo kericson makbot adenkabe ThomasKluge kndiaye duckysherwood scottkb freddan IanBrown squirmelia gkvas hrwiltse mfloris mamadoudiao LTrottier giolakat nikko sarahmccrum jago malkav30 psique Repton gvandyk1 pdessus joni2am taenneken vrich christian_librarian Neeperando ranger midshipman Corbasson murb yungyuc carterb applebyb kaniko skumagai Stepstep abdulpur mirweis nlauzier Axis gi0rgi0ne danzinde christiankissig jsenn tbolt427 Scis0000002 balicea Langster jeanbean EsepBib pulsus-morbi ezaydens melody scarcelan ablam maburkitt fghjorth austin MariaChiaraP wartaalman dconnelly kungcc Gaetan sbaete tanneama000 ricckli boellernadja tkravitz nafets laurabailey iarmac alexispaz pathari steveut wolfe275 dcastro yori amydash rpbharti rwilliamson motchy 6rheology songpku andrealira Zephyrus wilkinm AbnerCYH pchia raiyar davidchavalarias GEB CGREL CMU-HCII NU-PRL UoY-CS-AIG Blog_and_Wiki_Research CompetitionLawAndPolicy Tectonics_and_geomorphology NeuronDynamics Context-driven-testers ReadingLab political_science_students kdl distance remote TUCS-ES_Lab Quantum_physics_Education WAND sims_phd_cohort_2005 ASR digital_youth Librarians biodiversity_conservation Global_biodiversity_model InformationRetrieval Wikipedia AssistiveTechnology Bioinformatics mathgamespatterns MACLab folksonomy Neuroscience VisionLab Personal-Information-Management CMS Stoc_Proc_Ecology_WG LanguageAndBrain BrainTheory dtl hdm id vds-arg ALF DPR EvolutionaryComputation STS infovis 2ndFloor fammed-publichealth AI eni Biofluid FAB-lab DSS NeuralNetworks mobilecomputing tmig_psycho RETA SITCRC CDG cliamte_change folk_epistemology instaar_graduate_students Projet_ENSIMAG climate_change BUiGEM social_navigation Macroelectronics ARC04 The_Truants QFRMC_ConsumerCredit Plant-Tissue-Simulation METRIK Metaheuristics Boydian_Society eLearning BioinfoCIPF Nutritional_Polymorphisms CaltechCMP SEGAL Optimization location SNE kickOffTUG-Robocup NanoMechanicsofMetals_MPIMF Georouting Child_Support Software-Architecture ParkinsonLab_at_MaRS moernerlab ilps livingthing HUCO-627-W07 elearning_research PLE-TEL-project Femtochemistry_LMU ediadem ENSSIBVeille memoir ILK ColDyn ImatiGESemantic AGH-IISG PRC_SEA TCD-NDS102-Project CAOS Adaptive-Web Microbial-Ecology Flexible_ICT-supported_learning Social_Software_ws_07-08 DialogueResearchGroup AM-VideoGames-Gender dIEMoSIRIS microbiology_nijmegen Europe_GPE ZnO_project ADMiRes Health_Sciences_Librarians Desgin-by-Contract MITCCI Kopelman_Group DarkMarkGroup VivesMinions PostureMobility compneur Philosophy of physics PsychStatsBanter Video based Animation for People Social Informatics @ IU Global_patent_pools Knowledge_Economy_Reform feminist_technoscience Roswell Cancer Crosstalk Parsons MFA DT 2008 Thesis Research
  • Dimension Reduction for Classification with Gene Expression Microarray Data
    Statistical Applications in Genetics and Molecular Biology
    posted to no-tag by rdiaz on 2006-07-13 09:17:16 as ***** along with 2 people djkt mmunson
  • GECKO: a complete large-scale gene expression analysis platform.
    BMC Bioinformatics, Vol. 5 (10 December 2004)
    posted to asterias by rdiaz on 2006-07-10 22:26:38 as *****
  • Survival ensembles
    Biostatistics, Vol. 7, No. 3. (1 July 2006), pp. 355-373.
    posted to no-tag by rdiaz on 2006-06-26 12:55:50 as ***** along with 2 people jyuh jjrodriguez
  • notes Many accurate small-discriminatory feature subsets exist in microarray transcript data: biomarker discovery.
    BMC Bioinformatics, Vol. 6, No. 1. (13 April 2005)
    by Leslie R Grate
    posted to no-tag by rdiaz on 2006-04-21 00:18:42 as *****
  • Bias in error estimation when using cross-validation for model selection.
    BMC Bioinformatics, Vol. 7, No. 1. (23 February 2006)
    by Sudhir Varma, Richard Simon
    posted to no-tag by rdiaz on 2006-04-20 00:45:44 as ***** along with 2 people jyuh chad_davis
  • Differential gene expression detection and sample classification using penalized linear regression models.
    Bioinformatics, Vol. 22, No. 4. (15 February 2006), pp. 472-476.
    by B Wu
    posted to no-tag by rdiaz on 2006-04-20 00:39:29 as *****
  • Gene expression microarrays: glimpses of the immunological genome
    Nature Immunology, Vol. 7, No. 7., pp. 686-691.
    by Gordon Hyatt, Rachel Melamed, Richard Park, Reuben Seguritan, Catherine Laplace, Laurent Poirot, Silvia Zucchelli, Reinhard Obst, Michael Matos, Emily Venanzi, Ananda Goldrath, Linh Nguyen, John Luckey, Tetsuya Yamagata, Ann Herman, Jonathan Jacobs, Diane Mathis, Christophe Benoist
    posted to approaches new pals by rdiaz on 2007-01-04 17:20:04 as **** along with 1 person aalibes
  • arrayCGHbase: an analysis platform for comparative genomic hybridization microarrays.
    BMC Bioinformatics, Vol. 6 (2005)
    posted to acgh adacgh by rdiaz on 2006-12-20 13:53:20 as ****
  • WebArray: an online platform for microarray data analysis.
    BMC Bioinformatics, Vol. 6 (2005)
    by X Xia, M McClelland, Y Wang
    posted to acgh adacgh by rdiaz on 2006-12-20 13:49:24 as ****
  • ArrayFusion: a web application for multi-dimensional analysis of CGH, SNP and microarray data.
    Bioinformatics, Vol. 22, No. 21. (1 November 2006), pp. 2697-2698.
    by TP Yang, TY Chang, CH Lin, MT Hsu, HW Wang
  • Scientific Software Development Is Not an Oxymoron
    PLoS Computational Biology, Vol. 2, No. 9. (1 September 2006), e87.
    by Susan M Baxter, Steven W Day, Jacquelyn S Fetrow, Stephanie J Reisinger
  • Next station in microarray data analysis: GEPAS.
    Nucleic Acids Res, Vol. 34, No. Web Server issue. (1 July 2006)
  • notes Identifying genes that contribute most to good classification in microarrays
    BMC Bioinformatics, Vol. 7 (07 September 2006), 407.
    by Stuart G Baker, Barnett S Kramer
    posted to genesrf tnasas by rdiaz on 2006-09-08 15:28:18 as **** along with 2 people jfr shigepong
  • An integrated view of copy number and allelic alterations in the cancer genome using single nucleotide polymorphism arrays.
    Cancer Res, Vol. 64, No. 9. (1 May 2004), pp. 3060-3071.
    by X Zhao, C Li, JG Paez, K Chin, PA Jänne, TH Chen, L Girard, J Minna, D Christiani, C Leo, JW Gray, WR Sellers, M Meyerson
    posted to no-tag by rdiaz on 2006-08-17 14:50:29 as **** along with 2 people pcahan1 jfr
  • STAC: A method for testing the significance of DNA copy number aberrations across multiple array-CGH experiments.
    Genome Res (9 August 2006)
    by Sharon J J Diskin, Thomas Eck, Joel Greshock, Yael P P Mosse, Tara Naylor, Christian J J Stoeckert, Barbara L L Weber, John M M Maris, Gregory R R Grant
    posted to acgh minimal-region web by rdiaz on 2006-08-11 11:26:46 as **** along with 1 person jfr
  • notes High-resolution characterization of the pancreatic adenocarcinoma genome
    PNAS, Vol. 101, No. 24. (15 June 2004), pp. 9067-9072.
    by Andrew J Aguirre, Cameron Brennan, Gerald Bailey, Raktim Sinha, Bin Feng, Christopher Leo, Yunyu Zhang, Jean Zhang, Joseph D Gans, Nabeel Bardeesy, Craig Cauwels, Carlos Cordon-Cardo, Mark S Redston, Ronald A Depinho, Lynda Chin
    posted to acgh expression minimal-region by rdiaz on 2006-08-10 17:09:11 as **** along with 2 people OscarRueda frohike
  • VAMP: visualization and analysis of array-CGH, transcriptome and other molecular profiles.
    Bioinformatics (4 July 2006)
    by Philippe La Rosa, Eric Viara, Philippe Hupé, Gaëlle Pierron, Stéphane Liva, Pierre Neuvial, Isabel Brito, Séverine Lair, Nicolas Servant, Nicolas Robine, Elodie Manié, Caroline Brennetot, Isabelle Janoueix-Lerosey, Virginie Raynal, Nadège Gruel, Céline Rouveirol, Nicolas Stransky, Marc-Henri H Stern, Olivier Delattre, Alain Aurias, François Radvanyi, Emmanuel Barillot
    posted to no-tag by rdiaz on 2006-08-10 17:07:19 as ****
  • notes Computation of recurrent minimal genomic alterations from array-CGH data.
    Bioinformatics (24 January 2006)
    posted to acgh minimal-region by rdiaz on 2006-08-10 16:49:11 as **** along with 2 people archroad OscarRueda
  • Mapping tumor-suppressor genes with multipoint statistics from copy-number-variation data.
    Am J Hum Genet, Vol. 79, No. 1. (July 2006), pp. 13-22.
    by I Ionita, RS Daruwala, B Mishra
    posted to acgh by rdiaz on 2006-08-10 16:45:20 as **** along with 1 person and 1 group OscarRueda Bioinformatics
  • CAPweb: a bioinformatics CGH array Analysis Platform.
    Nucleic Acids Res, Vol. 34, No. Web Server issue. (1 July 2006)
    by S Liva, P Hupé, P Neuvial, I Brito, E Viara, P La Rosa, E Barillot
    posted to acgh web by rdiaz on 2006-08-10 11:58:29 as **** along with 1 person jackjackjjj
  • Boosting proportional hazards models using smoothing splines, with applications to high-dimensional microarray data
    Bioinformatics, Vol. 21, No. 10. (15 May 2005), pp. 2403-2409.
    by Hongzhe Li, Yihui Luan
    posted to microarray survival by rdiaz on 2006-06-26 11:25:59 as ****
  • Structured polychotomous machine diagnosis of multiple cancer types using gene expression.
    Bioinformatics, Vol. 22, No. 8. (15 April 2006), pp. 950-958.
    by JY Koo, I Sohn, S Kim, JW Lee
    posted to no-tag by rdiaz on 2006-04-21 00:19:30 as ****
  • Evaluation of gene importance in microarray data based upon probability of selection.
    BMC Bioinformatics, Vol. 6, No. 1. (2005)
    by LM Fu, CS Fu-Liu
    posted to 5 by rdiaz on 2006-04-20 00:40:46 as **** along with 3 people jfr jen_drake archroad
  • Gene selection algorithms for microarray data based on least squares support vector machine.
    BMC Bioinformatics, Vol. 7, No. 1. (27 February 2006)
    by E K Tang, P N Suganthan, X Yao
    posted to no-tag by rdiaz on 2006-04-20 00:38:33 as ****
  • Instance-based concept learning from multiclass DNA microarray data.
    BMC Bioinformatics, Vol. 7 (2006)
    posted to classification knn by rdiaz on 2006-04-20 00:37:36 as **** along with 2 people sampath frohike
  • notes HykGene: a hybrid approach for selecting marker genes for phenotype classification using microarray gene expression data.
    Bioinformatics, Vol. 21, No. 8. (15 April 2005), pp. 1530-1537.
    by Y Wang, FS Makedon, JC Ford, J Pearlman
    posted to classification gene selection by rdiaz on 2006-04-20 00:34:16 as ****
  • Bayesian Orthogonal Least Squares (BOLS) algorithm for reverse engineering of gene regulatory networks
    BMC Bioinformatics, Vol. 8, No. 1. (2007)
    by Chang S Kim
    posted to graphical model networks by rdiaz on 2007-07-16 11:06:28 as *** along with 4 people jyuh frohike shigepong zwang
  • Recursive Cluster Elimination (RCE) for Classification and Feature Selection from Gene Expression Data
    BMC Bioinformatics, Vol. 8 (02 May 2007), 144.
    by Malik Yousef, Segun Jung, Louise C Showe, Michael K Showe
    posted to signatures by rdiaz on 2007-05-18 08:50:23 as *** along with 3 people jyuh jfr srp33
  • High-level amplification at 17q23 leads to coordinated overexpression of multiple adjacent genes in breast cancer
    British Journal of Cancer, Vol. aop, No. current. (13 March 2007)
    posted to no-tag by rdiaz on 2007-05-09 15:49:47 as ***
  • A faster circular binary segmentation algorithm for the analysis of array CGH data.
    Bioinformatics (18 January 2007)
    by E S S Venkatraman, A B B Olshen
  • Individualized markers optimize class prediction of microarray data
    BMC Bioinformatics, Vol. 7 (14 July 2006), 345.
    by Pavlos Pavlidis, Panayiota Poirazi
    posted to no-tag by rdiaz on 2006-12-21 15:21:39 as *** along with 1 person jfr
  • In silico simulation of biological network dynamics
    Nat Biotech, Vol. 22, No. 8. (2004), pp. 1017-1019.
    by Lukasz Salwinski, David Eisenberg
    posted to array computing field fpga gate parallelization programmable by rdiaz on 2006-11-09 16:59:30 as ***
  • Analysis of gene amplification and prognostic markers in ovarian cancer using comparative genomic hybridization for microarrays and immunohistochemical analysis for tissue microarrays.
    Am J Clin Pathol, Vol. 126, No. 1. (July 2006), pp. 101-109.
    by D Mayr, V Kanitz, B Anderegg, B Luthardt, J Engel, U Löhrs, G Amann, J Diebold
    posted to no-tag by rdiaz on 2006-10-30 14:13:22 as ***
  • A genome-wide map of aberrantly expressed chromosomal islands in colorectal cancer
    Molecular Cancer, Vol. 5 (18 September 2006), 37.
    by Eike Staub, Joern Groene, Detlev Mennerich, Stefan Roepcke, Irina Klaman, Bernd Hinzmann, Esmeralda Castanos-Velez, Benno Mann, Christian Pilarsky, Thomas Brummendorf, Birgit Weber, Heinz-Johannes Buhr, Andre Rosenthal
    posted to cgh by rdiaz on 2006-10-30 13:50:23 as *** along with 2 people cpnP jfr
  • Development and validation of therapeutically relevant multi-gene biomarker classifiers.
    J Natl Cancer Inst, Vol. 97, No. 12. (15 June 2005), pp. 866-867.
    by R Simon
    posted to classification by rdiaz on 2006-08-22 11:38:21 as ***
  • Enhancing instance-based classification with local density: a new algorithm for classifying unbalanced biomedical data.
    Bioinformatics, Vol. 22, No. 8. (15 April 2006), pp. 981-988.
    by C Plant, C Böhm, B Tilg, C Baumgartner
    posted to no-tag by rdiaz on 2006-04-21 00:20:04 as ***
  • Regularized Least Squares Cancer classifiers from DNA microarray data.
    BMC Bioinformatics, Vol. 6 Suppl 4 (1 December 2005)
    posted to no-tag by rdiaz on 2006-04-20 00:46:10 as ***
  • Copy-number analysis goes more than skin deep
    Nature Genetics, Vol. 40, No. 1., pp. 5-6.
    by Steven A Mccarroll
    posted to no-tag by rdiaz on 2008-06-24 13:57:55 as **
  • Estimating an oncogenetic tree when false negatives and positives are present
    Mathematical Biosciences, Vol. 176, No. 2. (April 2002), pp. 219-236.
    by Aniko Szabo, Kenneth Boucher
    posted to no-tag by rdiaz on 2007-12-26 13:17:05 as **
  • Chromosome abnormalities in ovarian adenocarcinoma: III. Using breakpoint data to infer and test mathematical models for oncogenesis
    Genes, Chromosomes and Cancer, Vol. 28, No. 1. (2000), pp. 106-120.
    by Richard Simon, Richard Desper, Christos H Papadimitriou, Amy Peng, David S Alberts, Raymond Taetle, Jeffrey M Trent, Alejandro A Schäffer
    posted to no-tag by rdiaz on 2007-12-26 13:16:47 as **
  • Weighted clustering of called array CGH data.
    Biostatistics (22 December 2007)
    by Wessel N N Van Wieringen, Mark A A Van De Wiel, Bauke Ylstra
    posted to no-tag by rdiaz on 2007-12-26 10:54:49 as **
  • Construction of tree models for pathogenesis of nasopharyngeal carcinoma.
    Genes Chromosomes Cancer, Vol. 40, No. 4. (August 2004), pp. 307-315.
    by Z Huang, R Desper, AA Schäffer, Z Yin, X Li, K Yao
    posted to no-tag by rdiaz on 2007-12-26 10:51:45 as **
  • A Tumor Progression Model for Hepatocellular Carcinoma: Bioinformatic Analysis of Genomic Data
    <