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renatomilani bioinformatics [91 articles]

Recent papers added to renatomilani library classified by the tag bioinformatics. You can also see everyone's bioinformatics.
  • Computational modeling of the dynamics of the MAP kinase cascade activated by surface and internalized EGF receptors.
    Nat Biotechnol, Vol. 20, No. 4. (April 2002), pp. 370-375.
    by B Schoeberl, C Eichler-Jonsson, ED Gilles, G Müller
    posted to modelling map kinase bioinformatics by renatomilani on 2008-07-14 12:58:45 as ** along with 3 people lukaswindhager tuck sujaikumar
  • The Systems Biology Research Tool: evolvable open-source software
    BMC Systems Biology, Vol. 2, No. 1. (2008)
    by Jeremiah Wright, Andreas Wagner
    posted to tool systems network interaction bioinformatics by renatomilani on 2008-07-03 20:56:35 as ** along with 3 people jyuh reyez bootsy
  • Construction of a cancer-perturbed protein-protein interaction network for discovery of apoptosis drug targets
    BMC Systems Biology, Vol. 2, No. 1. (2008)
    by Liang H Chu, Bor S Chen
    posted to protein network interaction bioinformatics apoptosis by renatomilani on 2008-07-03 20:56:11 as ** along with 1 person reyez
  • Global investigation of protein-protein interactions in yeast Saccharomyces cerevisiae using re-occurring short polypeptide sequences
    Nucl. Acids Res. (27 June 2008), gkn390.
    by S Pitre, C North, M Alamgir, M Jessulat, A Chan, X Luo, JR Green, M Dumontier, F Dehne, A Golshani
    posted to protein interaction bioinformatics by renatomilani on 2008-07-03 20:55:51 as ** along with 3 people brianb pansapiens neils
  • Visualizing Global Properties of Large Complex Networks
    PLoS ONE, Vol. 3, No. 7. (2 July 2008), e2541.
    by Weijiang Li, Hiroyuki Kurata
    posted to tool network bioinformatics by renatomilani on 2008-07-03 19:29:45 as **
  • Why have serine/threonine/tyrosine kinases been evolutionarily selected in eukaryotic signaling cascades?
    Computational biology and chemistry (23 February 2008)
    by Hyung-Seok S Choi, Jeong-Rae R Kim, Sang-Woo W Lee, Kwang-Hyun H Cho
    posted to signaling kinase evolution bioinformatics by renatomilani on 2008-07-03 15:38:52 as *** along with 1 person carmenv
  • DAnTE: a statistical tool for quantitative analysis of -omics data
    Bioinformatics (3 May 2008), btn217.
    by Ashoka D Polpitiya, Wei-Jun Qian, Navdeep Jaitly, Vladislav A Petyuk, Joshua N Adkins, David G Camp, Gordon A Anderson, Richard D Smith
    posted to tool methods data bioinformatics by renatomilani on 2008-06-27 16:20:58 as ** along with 2 people jyuh brianb
  • A Bayesian Estimator of Protein-Protein Association Probabilities
    Bioinformatics (22 May 2008), btn238.
    by JM Gilmore, DL Auberry, JL Sharp, AM White, KK Anderson, DS Daly
    posted to protein interaction bioinformatics bayes by renatomilani on 2008-06-27 16:19:39 as ** along with 2 people jyuh zwang
  • Characterization and prediction of residues determining protein functional specificity
    Bioinformatics, Vol. 24, No. 13. (1 July 2008), pp. 1473-1480.
    by John A Capra, Mona Singh
    posted to structure specificity protein function bioinformatics by renatomilani on 2008-06-27 16:18:12 as ** along with 1 person marck
  • Towards the use of argumentation in bioinformatics: a gene expression case study
    Bioinformatics, Vol. 24, No. 13. (1 July 2008), pp. i304-312.
    by Kenneth Mcleod, Albert Burger
    posted to methods data bioinformatics argumentation by renatomilani on 2008-06-27 16:17:32 as ** along with 1 person dullhunk
  • Biomolecular network motif counting and discovery by color coding
    Bioinformatics, Vol. 24, No. 13. (1 July 2008), pp. i241-249.
    by Noga Alon, Phuong Dao, Iman Hajirasouliha, Fereydoun Hormozdiari, Cenk S Sahinalp
    posted to network module bioinformatics by renatomilani on 2008-06-27 16:16:16 as **
  • Prediction of drug-target interaction networks from the integration of chemical and genomic spaces
    Bioinformatics, Vol. 24, No. 13. (1 July 2008), pp. i232-240.
    by Yoshihiro Yamanishi, Michihiro Araki, Alex Gutteridge, Wataru Honda, Minoru Kanehisa
    posted to protein network interaction drug bioinformatics by renatomilani on 2008-06-27 16:15:31 as ** along with 1 person girschick
  • Identifying functional modules in protein-protein interaction networks: an integrated exact approach
    Bioinformatics, Vol. 24, No. 13. (1 July 2008), pp. i223-231.
    by Marcus T Dittrich, Gunnar W Klau, Andreas Rosenwald, Thomas Dandekar, Tobias Muller
    posted to protein network module interaction bioinformatics by renatomilani on 2008-06-27 16:14:43 as ** along with 2 people chad_davis marck
  • Inferring differentiation pathways from gene expression
    Bioinformatics, Vol. 24, No. 13. (1 July 2008), pp. i156-164.
    by Ivan G Costa, Stefan Roepcke, Christoph Hafemeister, Alexander Schliep
    posted to pathway gene expression bioinformatics by renatomilani on 2008-06-27 16:14:13 as ** along with 2 people balicea roys
  • In silico activity profiling reveals the mechanism of action of antimalarials discovered in a high-throughput screen
    Proceedings of the National Academy of Sciences (25 June 2008), 0802982105.
    by David Plouffe, Achim Brinker, Case Mcnamara, Kerstin Henson, Nobutaka Kato, Kelli Kuhen, Advait Nagle, Francisco Adrian, Jason T Matzen, Paul Anderson, Tae-Gyu Nam, Nathanael S Gray, Arnab Chatterjee, Jeff Janes, Frank S Yan, Richard Trager, Jeremy S Caldwell, Peter G Schultz, Yingyao Zhou, Elizabeth A Winzeler
    posted to pathway network malaria bioinformatics by renatomilani on 2008-06-26 15:47:13 as **
  • Osprey: a network visualization system.
    Genome Biol, Vol. 4, No. 3. (2003)
    by BJ Breitkreutz, C Stark, M Tyers
    posted to tool pathway interaction bioinformatics by renatomilani on 2008-06-24 15:03:02 as ** along with 7 people and 1 group hryk djsaab tdent ianturton ganden Evangelia maralena CHISEL
  • The universal protein resource (UniProt).
    Nucleic Acids Res, Vol. 36, No. Database issue. (January 2008)
    by
    posted to protein database bioinformatics by renatomilani on 2008-06-24 14:32:24 as ** along with 1 person jyuh
  • A computational analysis of the protein-protein interaction networks in neurodegenerative diseases
    BMC Systems Biology, Vol. 2, No. 1. (2008)
    by Joaquin Goni, Francisco Esteban, Nieves V de Mendizabal, Jorge Sepulcre, Sergio A Treijano, Ion Agirrezabal, Pablo Villoslada
    posted to protein network methods interaction bioinformatics by renatomilani on 2008-06-21 03:50:49 as ** along with 3 people AbnerCYH reyez bootsy
  • Ontological visualization of protein-protein interactions.
    BMC Bioinformatics, Vol. 6 (2005)
    by HJ Drabkin, C Hollenbeck, DP Hill, JA Blake
    posted to tool protein interaction go bioinformatics by renatomilani on 2008-06-20 19:42:20 as ** along with 1 person and 1 group irenas dbk-lab
  • Computational approaches to protein-protein interaction.
    J Struct Funct Genomics, Vol. 4, No. 4. (2003), pp. 245-255.
    by G Franzot, O Carugo
    posted to tool protein interaction bioinformatics by renatomilani on 2008-06-20 19:41:41 as ** along with 2 people bicko chad_davis
  • Computational analyses of high-throughput protein-protein interaction data.
    Curr Protein Pept Sci, Vol. 4, No. 3. (June 2003), pp. 159-181.
    by Y Chen, D Xu
    posted to network interaction bioinformatics by renatomilani on 2008-06-20 19:41:05 as ** along with 1 person iris_2001
  • Bioinformatics analysis for interactive proteomics.
    Current protocols in protein science / editorial board, John E. Coligan ... [et al.], Vol. Chapter 25 (December 2005)
    by Y Chen, D Xu
    posted to proteome network interaction bioinformatics by renatomilani on 2008-06-20 19:40:30 as **
  • Phosphoproteomics toolbox: Computational biology, protein chemistry and mass spectrometry
    FEBS Letters, Vol. 580, No. 20. (4 September 2006), pp. 4764-4770.
    by Majbrit Hjerrild, Steen Gammeltoft
    posted to tool kinase bioinformatics by renatomilani on 2008-06-20 19:18:12 as **
  • Experimental and bioinformatic approaches for interrogating protein-protein interactions to determine protein function
    J Mol Endocrinol, Vol. 34, No. 2. (1 April 2005), pp. 263-280.
    by Arnaud Droit, Guy G Poirier, Joanna M Hunter
    posted to protein network bioinformatics by renatomilani on 2008-06-20 19:15:53 as *****
  • PhosphoBlast, a Computational Tool for Comparing Phosphoprotein Signatures among Large Datasets.
    Mol Cell Proteomics, Vol. 7, No. 1. (January 2008), pp. 145-162.
    by Y Wang, RL Klemke
    posted to tool kinase bioinformatics by renatomilani on 2008-06-19 20:36:00 as ** along with 1 person jyuh
  • Getting connected: analysis and principles of biological networks.
    Genes Dev, Vol. 21, No. 9. (1 May 2007), pp. 1010-1024.
    by X Zhu, M Gerstein, M Snyder
    posted to systems network bioinformatics by renatomilani on 2008-06-19 20:11:13 as ***** along with 9 people carlk jfr balajis grahamc fishtank nedwards naegele Evangelia kristen
  • Bioinformatic prediction and analysis of eukaryotic protein kinases in the rat genome.
    Gene, Vol. 410, No. 1. (29 February 2008), pp. 147-153.
    by JU Kazi, NN Kabir, JW Soh
    posted to kinase bioinformatics by renatomilani on 2008-06-18 20:41:06 as **
  • Analysis of the role of retrotransposition in gene evolution in vertebrates
    BMC Bioinformatics, Vol. 8 (24 August 2007), 308.
    by Zhan Yu, David Morais, Mahine Ivanga, Paul M Harrison
    posted to retrotransposon evolution bioinformatics by renatomilani on 2008-06-18 20:35:53 as **
  • Genome-wide survey for biologically functional pseudogenes.
    PLoS Comput Biol, Vol. 2, No. 5. (May 2006)
    by O Svensson, L Arvestad, J Lagergren
    posted to pseudogene bioinformatics by renatomilani on 2008-06-18 20:35:12 as ** along with 3 people and 2 groups smbe2008 bsmagic cjeans Bioinformatics bioinplant
  • Structural Evolution of the Protein Kinase-Like Superfamily.
    PLoS Comput Biol, Vol. 1, No. 5. (21 October 2005)
    by Eric D D Scheeff, Philip E E Bourne
    posted to structure kinase evolution bioinformatics by renatomilani on 2008-06-18 20:32:40 as ** along with 3 people and 2 groups BragilMassoud ana anwazo structural_bioinformatics Bioinformatics
  • Cytoscape ESP: simple search of complex biological networks.
    Bioinformatics (Oxford, England) (28 April 2008)
    by Maital Ashkenazi, Gary D D Bader, Allan Kuchinsky, Menachem Moshelion, David J J States
    posted to tool bioinformatics by renatomilani on 2008-06-16 21:14:06 as ** along with 4 people grahamc jyuh kengg maralena
  • Discovering functional interaction patterns in protein-protein interaction networks
    BMC Bioinformatics, Vol. 9, No. 1. (2008)
    by Mehmet Turanalp, Tolga Can
    posted to protein network interaction bioinformatics by renatomilani on 2008-06-12 21:48:54 as ** along with 3 people and 1 group aprildh31 maralena Tingting Proteasome
  • Biological tools revamp disease classification : Nature News
    posted to tool systems bioinformatics by renatomilani on 2008-06-05 05:42:18 as **
  • Calling on a million minds for community annotation in WikiProteins
    Genome Biology, Vol. 9, No. 5. (2008)
    by Barend Mons, Michael Ashburner, Christine Chichester, Erik van Mulligen, Marc Weeber, Johan den Dunnen, Gert J van Ommen, Mark Musen, Matthew Cockerill, Henning Hermjakob, Albert Mons, Abel Packer, Roberto Pacheco, Suzanna Lewis, Alfred Berkeley, William Melton, Nickolas Barris, Jimmy Wales, Gerard Meijssen, Erik Moeller, Peter Roes, Katy Borner, Amos Bairoch
    posted to database bioinformatics annotation by renatomilani on 2008-06-03 12:49:06 as ** along with 12 people and 1 group ChrisEvelo sjc fpattyn Katje jamselem chad_davis yas dullhunk tharris thomaskelder AlexanderPico neils microbiology_nijmegen
  • An Introduction to Pathway Analysis with GenMAPP : Bioinformatics Primer : Pathway Interaction Database
    posted to pathway bioinformatics by renatomilani on 2008-05-30 13:14:10 as **
  • PLoS ONE: iTools: A Framework for Classification, Categorization and Integration of Computational Biology Resources
    posted to bioinformatics by renatomilani on 2008-05-29 02:49:24 as ** along with 1 person and 1 group lmichan e-research en ciencias médicas y biológicas
  • Uncovering signal transduction networks from high-throughput data by integer linear programming.
    Nucleic acids research (13 April 2008)
    by Xing-Ming M Zhao, Rui-Sheng S Wang, Luonan Chen, Kazuyuki Aihara
    posted to signaling network bioinformatics by renatomilani on 2008-05-21 13:40:17 as ** along with 3 people mcoyne gurkanbebek ptrobajo
  • KEGG Atlas mapping for global analysis of metabolic pathways
    Nucl. Acids Res. (13 May 2008), gkn282.
    by Shujiro Okuda, Takuji Yamada, Masami Hamajima, Masumi Itoh, Toshiaki Katayama, Peer Bork, Susumu Goto, Minoru Kanehisa
    posted to pathway kegg bioinformatics by renatomilani on 2008-05-21 13:33:17 as ** along with 1 person jyuh
  • Analysis of the human kinome using methods including fold recognition reveals two novel kinases.
    PLoS ONE, Vol. 3, No. 2. (2008)
    by KM Briedis, A Starr, PE Bourne
    posted to methods kinome bioinformatics by renatomilani on 2008-05-16 20:27:58 as **
  • Automated extraction of meaningful pathways from quantitative proteomics data
    Brief Funct Genomic Proteomic, Vol. 7, No. 2. (1 March 2008), pp. 136-146.
    by Josselin Noirel, Saw Y Ow, Guido Sanguinetti, Alfonso Jaramillo, Phillip C Wright
    posted to proteome bioinformatics by renatomilani on 2008-05-13 20:32:21 as **
  • A Note on the False Discovery Rate and Inconsistent Comparisons between Experiments.
    Bioinformatics (Oxford, England) (19 April 2008)
    by Roger Higdon, Gerald van V Belle, Eugene Kolker
    posted to bioinformatics by renatomilani on 2008-05-08 17:44:31 as ** along with 6 people braynor giovenko wisdom_love girschick jyuh shigepong
  • Computational intelligence approaches for pattern discovery in biological systems
    Brief Bioinform (5 May 2008), bbn021.
    by Gary B Fogel
    posted to review bioinformatics by renatomilani on 2008-05-08 04:41:03 as ** along with 1 person maximilianh
  • Inferring the role of transcription factors in regulatory networks
    BMC Bioinformatics, Vol. 9 (06 May 2008), 228.
    by Philippe Veber, Carito Guziolowski, Michel Le Borgne, Ovidiu Radulescu, Anne Siegel
    posted to network expression bioinformatics by renatomilani on 2008-05-08 04:37:56 as ** along with 4 people isimpson idonaldson maralena heliopais
  • A critical examination of stoichiometric and path-finding approaches to metabolic pathways
    Brief Bioinform (24 April 2008), bbn018.
    by Francisco J Planes, John E Beasley
    posted to pathway metabolic bioinformatics by renatomilani on 2008-04-29 21:51:53 as **
  • IMGT, a system and an ontology that bridge biological and computational spheres in bioinformatics
    Brief Bioinform (19 April 2008), bbn014.
    by Lefranc Marie-Paule, Veronique Giudicelli, Laetitia Regnier, Patrice Duroux
    posted to bioinformatics by renatomilani on 2008-04-29 21:50:20 as ** along with 1 person sci91078
  • A Quick Guide for Computer-Assisted Instruction in Computational Biology and Bioinformatics
    PLoS Computational Biology
    by MJ Costa, E Galembeck, GA Marson, BB Torres
    posted to bioinformatics by renatomilani on 2008-04-29 21:41:34 as **
  • Large-scale computational and statistical analyses of high transcription potentialities in 32 prokaryotic genomes
    Nucl. Acids Res. (25 April 2008), gkn135.
    by Christine Sinoquet, Sylvain Demey, Frederique Braun
    posted to bioinformatics by renatomilani on 2008-04-29 21:36:29 as **
  • Comparative conservation analysis of the human mitotic phosphoproteome
    Bioinformatics (20 April 2008), btn197.
    by Rainer Malik, Erich A Nigg, Roman Korner
    posted to proteome kinase bioinformatics by renatomilani on 2008-04-29 21:32:56 as ** along with 2 people niallhaslam Ema
  • A Global Pathway Crosstalk Network
    Bioinformatics (23 April 2008), btn200.
    by Yong Li, Pankaj Agarwal, Dilip Rajagopalan
    posted to pathway bioinformatics by renatomilani on 2008-04-29 21:32:12 as ** along with 6 people balicea jyuh AlexanderPico bootsy maralena thomaskelder
  • Information quality in proteomics
    Brief Bioinform, Vol. 9, No. 2. (1 March 2008), pp. 174-188.
    by David A Stead, Norman W Paton, Paolo Missier, Suzanne M Embury, Cornelia Hedeler, Binling Jin, Alistair J Brown, Alun Preece
    posted to review proteome pipeline bioinformatics by renatomilani on 2008-04-29 19:53:13 as ***** along with 2 people alanrw neils
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