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roys biological_networks [19 articles]

Recent papers added to roys library classified by the tag biological_networks. You can also see everyone's biological_networks.
  • Geometric Interpretation of Gene Coexpression Network Analysis
    PLoS Comput Biol, Vol. 4, No. 8. (2008), e1000117.
    by Steve Horvath, Jun Dong
  • Large-Scale Mapping and Validation of Escherichia coli Transcriptional Regulation from a Compendium of Expression Profiles
    PLoS Biology, Vol. 5, No. 1. (1 January 2007), e8.
    by Jeremiah J Faith, Boris Hayete, Joshua T Thaden, Ilaria Mogno, Jamey Wierzbowski, Guillaume Cottarel, Simon Kasif, James J Collins, Timothy S Gardner
  • Unraveling Protein Networks with Power Graph Analysis
    PLoS Comput Biol, Vol. 4, No. 7. (11 July 2008), e1000108.
    by Loïc Royer, Matthias Reimann, Bill Andreopoulos, Michael Schroeder
  • An Integrated Approach for the Analysis of Biological Pathways using Mixed Models
    PLoS Genet, Vol. 4, No. 7. (4 July 2008), e1000115.
    by Lily Wang, Bing Zhang, Russell D Wolfinger, Xi Chen
  • Direct targets of the TRP63 transcription factor revealed by a combination of gene expression profiling and reverse engineering
    Genome Res. (25 April 2008), gr.073601.107.
    by Giusy Della Gatta, Mukesh Bansal, Alberto Ambesi-Impiombato, Dario Antonini, Caterina Missero, Diego di Bernardo
  • Dynamic analysis of integrated signaling, metabolic, and regulatory networks.
    PLoS computational biology, Vol. 4, No. 5. (May 2008)
    by J Min Lee, EP Gianchandani, JA Eddy, JA Papin
  • Anticipatory Behavior Within Microbial Genetic Networks
    Science (8 May 2008), 1154456.
    by Ilias Tagkopoulos, Yir-Chung Liu, Saeed Tavazoie
  • Modularization of biochemical networks based on classification of Petri net t-invariants
    BMC Bioinformatics, Vol. 9, No. 1. (2008)
    by Eva G Belau, Falk Schreiber, Monika Heiner, Andrea Sackmann, Bjorn Junker, Stefanie Grunwald, Astrid Speer, Katja Winder, Ina Koch
  • Reconstructing gene regulatory networks with bayesian networks by combining expression data with multiple sources of prior knowledge.
    Stat Appl Genet Mol Biol, Vol. 6 (2007)
    by AV Werhli, D Husmeier
  • Network properties of genes harboring inherited disease mutations.
    Proc Natl Acad Sci U S A (7 March 2008)
    by Igor Feldman, Andrey Rzhetsky, Dennis Vitkup
  • High-confidence prediction of global interactomes based on genome-wide coevolutionary networks
    Proceedings of the National Academy of Sciences (16 January 2008), 0709671105.
    by David Juan, Florencio Pazos, Alfonso Valencia
  • Learning module networks
    (2003)
    by E Segal, D Pe'er, A Regev, D Koller, N Friedman
  • Modularized learning of genetic interaction networks from biological annotations and mRNA expression data
    Bioinformatics, Vol. 21, No. 11. (1 June 2005), pp. 2739-2747.
    by Phil H Lee, Doheon Lee
  • Modularity and Dynamics of Cellular Networks
    PLoS Computational Biology, Vol. 2, No. 12. (1 December 2006), e174.
    by Yuan Qi, Hui Ge
  • Evolutionary plasticity of developmental gene regulatory network architecture
    Proceedings of the National Academy of Sciences (27 November 2007), 0709994104.
    by Veronica F Hinman, Eric H Davidson
  • Inferring genetic networks and identifying compound mode of action via expression profiling.
    Science, Vol. 301, No. 5629. (4 July 2003), pp. 102-105.
  • Linear Modeling of Genetic Networks from Experimental Data
    pp. 355-366.
    by EP van Someren, LFA Wessels, MJT Reinders
    posted to biological_networks network_inference regression by roys on 2007-11-06 03:49:52 as **
  • Boolean dynamics of genetic regulatory networks inferred from microarray time series data
    Bioinformatics, Vol. 23, No. 7. (1 April 2007), pp. 866-874.
    posted to biological_networks boolean network_inference networks by roys on 2007-11-06 03:38:54 as **
  • A Probabilistic Methodology for Integrating Knowledge and Experiments on Biological Networks
    Journal of Computational Biology, Vol. 13, No. 2. (March 2006), pp. 165-181.
    by Irit Gat-Viks, Amos Tanay, Daniela Raijman, Ron Shamir
    posted to biological_networks factor_graphs transcription_modules by roys on 2007-11-06 03:28:53 as read
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