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skhadar library [39 articles]

Статьи, недавно добавленные в библиотеку skhadar .
  • On ontologies for biologists: the Gene Ontology--untangling the web.
    Novartis Found Symp, Vol. 247 (2002)
    by M Ashburner, S Lewis
    posted to go geneontology database bioinformatics by skhadar on 2008-05-28 09:36:40 as **** along with 1 person ziquje
  • COILCHECK: An Interactive Server for the Analysis of Interface Regions in Coiled Coils
    Protein and Peptide Letters, Vol. 15, No. 1. (January 2008), pp. 33-38.
    by Sowdhamini, , Alva, , Syamala Devi,
    posted to algorithm bioinformatics server web by skhadar on 2008-03-13 17:50:36 as **
  • The developmental genetics of homology
    Nature Reviews Genetics, Vol. 8, No. 6. (08 May 2007), pp. 473-479.
    by Günter P Wagner
    posted to genome homology by skhadar on 2008-02-27 08:12:48 as ** along with 3 people and 2 groups balicea dchughes zwang G4ID Genetics-of-Gambling
  • The Bioperl Toolkit: Perl Modules for the Life Sciences
    Genome Res., Vol. 12, No. 10. (1 October 2002), pp. 1611-1618.
    by Jason E Stajich, David Block, Kris Boulez, Steven E Brenner, Stephen A Chervitz, Chris Dagdigian, Georg Fuellen, James G Gilbert, Ian Korf, Hilmar Lapp, Heikki Lehvaslaiho, Chad Matsalla, Chris J Mungall, Brian I Osborne, Matthew R Pocock, Peter Schattner, Martin Senger, Lincoln D Stein, Elia Stupka, Mark D Wilkinson, Ewan Birney
    posted to no-tag by skhadar on 2008-02-27 07:06:50 as read along with 17 people and 2 groups ninch jmeppley chad_davis rvosa indigoviolet dullhunk dgront stajich noby incovoma glycine tyrosine threonine valine nklee hpaces sekmi EisenLab FAB-lab
  • Evolutionary Genomics: Transdomain Gene Transfers
    Current Biology, Vol. 17, No. 21. (6 November 2007), pp. R935-R936.
    by Seth R Bordenstein
    posted to gene_transfer genome genome_informatics protein_domain by skhadar on 2008-02-27 07:05:41 as ** along with 3 people mblwhoi zwang hpaces
  • Common sense for our genomes
    Nature, Vol. 449, No. 7164. (18 October 2007), pp. 783-784.
    by Steven E Brenner
    posted to bi by skhadar on 2008-02-27 07:02:38 as ** along with 9 people dchughes dullhunk wenhan jasonbobe ibuch farhat barriot psique hpaces
  • The Global Landscape of Sequence Diversity
    Genome Biology, Vol. 8 (08 November 2007), R238.
    by Jose M Peregrin-Alvarez, John Parkinson
    posted to bioinformatics homology sequence_analysis by skhadar on 2008-02-27 07:02:13 as ** along with 4 people gpalidwor cjeans hpaces ale
  • An efficient algorithm for large-scale detection of protein families.
    Nucleic Acids Res, Vol. 30, No. 7. (1 April 2002), pp. 1575-1584.
    by AJ Enright, S Van Dongen, CA Ouzounis
    posted to algorithm analysis bioinformatics protein_family sequence_analysis by skhadar on 2008-02-27 07:01:20 as ** along with 12 people and 2 groups Borelli camster operon knaseanka indigoviolet nirfriedman dgront entropy gcalda GustavoLacerda hpaces RebeccaHamer dbk-lab EisenLab
  • Interactive Tree Of Life (iTOL): an online tool for phylogenetic tree display and annotation
    Bioinformatics, Vol. 23, No. 1. (1 January 2007), pp. 127-128.
    by Letunic, Ivica, Bork, Peer
    posted to phyloinformatics by skhadar on 2008-02-27 07:00:20 as ** along with 4 people and 2 groups jyuh marcius hpaces gjuggler BioinfoCIPF SGU-CIPF
  • Predicting protein function from sequence and structure
    Nat Rev Mol Cell Biol, Vol. 8, No. 12. (December 2007), pp. 995-1005.
    by David Lee, Oliver Redfern, Christine Orengo
    posted to bioinformatics sequence_analysis structure_analysis by skhadar on 2008-02-27 06:59:48 as ** along with 8 people kluck neils cjeans zwang Evangelia hpaces Ema renatomilani
  • Detecting Coevolution in and among Protein Domains
    PLoS Computational Biology, Vol. 3, No. 11. (1 November 2007), e211.
    by Chen-Hsiang Yeang, David Haussler
    posted to bioinformatics phyloinformatics sequence_analysis by skhadar on 2008-02-27 06:58:55 as ** along with 11 people and 1 group pradiptaray balicea zwang sobolevnrm niallhaslam hpaces mingzhi Ema phoenixzxl penpen926 friendpine baker-group
  • Predicting Protein Function with Hierarchical Phylogenetic Profiles: The Gene3D Phylo-Tuner Method Applied to Eukaryotic Genomes
    PLoS Computational Biology, Vol. 3, No. 11. (1 November 2007), e237.
    by Juan A Ranea, Corin Yeats, Alastair Grant, Christine A Orengo
    posted to algorithm analysis bioinformatics phyloinformatics by skhadar on 2008-02-27 06:57:51 as ** along with 4 people eckart_bindewald zwang asddd hpaces
  • Recent Evolutions of Multiple Sequence Alignment Algorithms
    PLoS Computational Biology, Vol. 3, No. 8. (1 August 2007), e123.
    by Cédric Notredame
    posted to algorithm bioinformatics msa by skhadar on 2008-02-27 06:56:54 as ** along with 3 people and 1 group sobolevnrm hpaces mingzhi baker-group
  • Comparative analysis of the complete genome sequence of the plant growth–promoting bacterium Bacillus amyloliquefaciens FZB42
    Nature Biotechnology, Vol. 25, No. 9. (19 August 2007), pp. 1007-1014.
    by Xiao H Chen, Alexandra Koumoutsi, Romy Scholz, Andreas Eisenreich, Kathrin Schneider, Isabelle Heinemeyer, Burkhard Morgenstern, Björn Voss, Wolfgang R Hess, Oleg Reva, Helmut Junge, Birgit Voigt, Peter R Jungblut, Joachim Vater, Roderich Süssmuth, Heiko Liesegang, Axel Strittmatter, Gerhard Gottschalk, Rainer Borriss
    posted to analysis bioinformatics genome_informatics by skhadar on 2008-02-27 06:56:12 as **** along with 1 person hpaces
  • The ENCODE (ENCyclopedia Of DNA Elements) Project.
    Science, Vol. 306, No. 5696. (22 October 2004), pp. 636-640.
    by E Encode
    posted to analysis bioinformatics database diseases genome genome_informatics by skhadar on 2008-02-27 06:55:24 as ** along with 9 people and 1 group siebert setar balajis qfwills djkt frohike JeffR100 olympos hpaces Bioinformatics
  • Chaos game representation for comparison of whole genomes
    BMC Bioinformatics, Vol. 7, No. 1. (2006)
    by Jijoy Joseph, Roschen Sasikumar
    posted to bioinformatics cgr machinelearning by skhadar on 2008-02-27 06:54:26 as read along with 2 people operon hpaces
  • The Diploid Genome Sequence of an Individual Human
    PLoS Biology, Vol. 5, No. 10. (1 October 2007), e254.
    by Samuel Levy, Granger Sutton, Pauline C Ng, Lars Feuk, Aaron L Halpern, Brian P Walenz, Nelson Axelrod, Jiaqi Huang, Ewen F Kirkness, Gennady Denisov, Yuan Lin, Jeffrey R Macdonald, Andy W Pang, Mary Shago, Timothy B Stockwell, Alexia Tsiamouri, Vineet Bafna, Vikas Bansal, Saul A Kravitz, Dana A Busam, Karen Y Beeson, Tina C Mcintosh, Karin A Remington, Josep F Abril, John Gill, Jon Borman, Yu-Hui Rogers, Marvin E Frazier, Stephen W Scherer, Robert L Strausberg, Craig J Venter
    posted to bioinformatics genome infroamtics by skhadar on 2008-02-27 06:53:53 as ** along with 17 people and 1 group operon carlblesius bpb balicea dullhunk djkt jackjackjjj ramensky massivemayhem jasonbobe PredictER lp2 cabbagezs xingxu hpaces maburkitt nhp Bioinformatics
  • HARMONY: a server for the assessment of protein structures.
    Nucleic Acids Res, Vol. 34, No. Web Server issue. (1 July 2006)
    by G Pugalenthi, K Shameer, N Srinivasan, R Sowdhamini
    posted to algorithm bioinformatics protein server structure web by skhadar on 2007-11-28 12:09:18 as ***** along with 2 people wouterboomsma wilbur
  • Systematic discovery of in vivo phosphorylation networks.
    Cell, Vol. 129, No. 7. (29 June 2007), pp. 1415-1426.
    by R Linding, LJ Jensen, GJ Ostheimer, MA van Vugt, C Jørgensen, IM Miron, F Diella, K Colwill, L Taylor, K Elder, P Metalnikov, V Nguyen, A Pasculescu, J Jin, JG Park, LD Samson, JR Woodgett, RB Russell, P Bork, MB Yaffe, T Pawson
    posted to phosphatase protein proteinprotein protein-protein-interaction by skhadar on 2007-10-30 11:48:11 as *** along with 14 people and 2 groups chad_davis carlk daed Evangelia renatomilani jyuh julius zwang cdppublications lp2 psique robrussell snowcrash larsjuhljensen SysbioMPI-TCells Durbin group
  • 3D domain swapping: As domains continue to swap
    Protein Sci, Vol. 11, No. 6. (1 June 2002), pp. 1285-1299.
    by Yanshun Liu, David Eisenberg
    posted to 3ddomainswapping domainswapping protein by skhadar on 2007-10-30 08:47:02 as ** along with 2 people tny dgront
  • Biopython: Python tools for computational biology
    ACM SIGBIO Newsletter, Vol. 20, No. 2. (2000), pp. 15-19.
    by B Chapman, J Chang
    posted to no-tag by skhadar on 2007-10-29 13:19:35 as ** along with 1 person noby
  • Working with Strings and Substrings
    by Dhyatt@thor
    posted to perl programming by skhadar on 2007-08-30 09:57:29 as **
  • miRNomics--The bioinformatic approach
    Biochemical and Biophysical Research Communications, Vol. In Press, Uncorrected Proof
    by Zhumur Ghosh, Jayprokas Chakrabarti, Bibekanand Mallick
    posted to mirna rna by skhadar on 2007-08-25 17:51:53 as ** along with 6 people and 3 groups natstreet andersbj dchughes heliopais delenca maralena microRNA G4ID Genetics-of-Gambling
  • PROVAT: a tool for Voronoi tessellation analysis of protein structures and complexes.
    Bioinformatics, Vol. 21, No. 15. (1 August 2005), pp. 3316-3317.
    by SP Gore, DF Burke, TL Blundell
    posted to algorithm protein structure by skhadar on 2007-08-25 17:51:15 as ** along with 4 people and 1 group bicko Einat massivemayhem medic0747 structural_bioinformatics
  • Comparative protein modelling by satisfaction of spatial restraints.
    J Mol Biol, Vol. 234, No. 3. (5 December 1993), pp. 779-815.
    by A Sali, TL Blundell
    posted to modelling protein by skhadar on 2007-08-25 17:24:22 as read along with 11 people granujilla dimka vavi bicko chad_davis ttjoseph dgront rabio massivemayhem medic0747 sebk
  • An automatic method involving cluster analysis of secondary structures for the identification of domains in proteins.
    Protein Sci, Vol. 4, No. 3. (March 1995), pp. 506-520.
    by R Sowdhamini, TL Blundell
    posted to bioinformatics domain prediction protein-protein by skhadar on 2007-08-23 09:12:14 as ** along with 2 people dimka medic0747
  • Prediction of functional sites by analysis of sequence and structure conservation.
    Protein Sci, Vol. 13, No. 4. (April 2004), pp. 884-892.
    by AR Panchenko, F Kondrashov, S Bryant
    posted to bioinformatics functional interaction interactions prediction sites by skhadar on 2007-08-17 07:49:55 as ** along with 4 people chrn sriram_s tanuja_rastogi Jporci
  • Machine Learning and Its Applications to Biology
    PLoS Computational Biology, Vol. 3, No. 6. (1 June 2007), e116.
    by Adi L Tarca, Vincent J Carey, Xue-Wen Chen, Roberto Romero, Sorin Drăghici
    posted to bioinformatics machinelearning by skhadar on 2007-07-25 12:28:54 as ** along with 7 people and 2 groups Borelli julius cjeans asddd ciga nklee kmdaily SysbioMPI-TCells Computational_Information_Geometry
  • CARGO: a web portal to integrate customized biological information.
    Nucleic Acids Res, Vol. 35, No. Web Server issue. (1 July 2007)
    by I Cases, DG Pisano, E Andres, A Carro, JM Fernández, G Gómez-López, JM Rodriguez, JF Vera, A Valencia, AM Rojas
    posted to bioinformatics database databases by skhadar on 2007-07-25 12:27:41 as ** along with 3 people jyuh jfr moborg
  • RAMEDIS: The Rare Metabolic Diseases Database
    Applied Bioinformatics, Vol. 5, No. 2. (2006), pp. 115-118.
    by Topel, Thoralf, Hofestadt, Ralf, Scheible, Dagmar, Trefz, Friedrich
    posted to database diseases metabolic rare by skhadar on 2007-07-25 09:04:38 as **
  • A more complete, complexed and structured interactome.
    Curr Opin Struct Biol (14 June 2007)
    by Damien Devos, Robert B Russell
    posted to interactome by skhadar on 2007-07-25 07:46:13 as ** along with 4 people chad_davis balicea choonpeng ruvido
  • Molecular dynamics simulations of tubulin structure and calculations of electrostatic properties of microtubules
    Mathematical and computer modelling (2005)
    by JA Tuszynski, JA Brown, E Crawford, EJ Carpenter, MLA Nip, JM Dixon, MV Sataric
    posted to dynamics molecular simulations by skhadar on 2007-07-25 07:45:00 as ** along with 1 person qwermish
  • ACE2: A New Target for Prevention of Diabetic Nephropathy?
    J Am Soc Nephrol, Vol. 17, No. 11. (November 2006), pp. 2957-2959.
    by JR Ingelfinger
    posted to diabetics target by skhadar on 2007-07-25 07:44:30 as ** along with 2 people jyuh brainsman2000
  • Operating Systems Design and Implementation (3rd Edition) (Prentice Hall Software Series)
    (04 January 2006)
    by Andrew S Tanenbaum, Albert S Woodhull
    posted to operating systems by skhadar on 2007-07-25 07:43:11 as ** along with 3 people and 2 groups lmorel sensorweb nmpountou TUCS-ES_Lab TUCS-KITARA_project
  • KemaDom: a web server for domain prediction using kernel machine with local context.
    Nucleic Acids Res, Vol. 34, No. Web Server issue. (1 July 2006)
    by L Chen, W Wang, S Ling, C Jia, F Wang
    posted to domain kernel machine prediction server web by skhadar on 2007-07-25 07:41:32 as ** along with 1 person and 2 groups marcius BioinfoCIPF SGU-CIPF
  • Using bioinformatics and genome analysis for new therapeutic interventions.
    Mol Cancer Ther, Vol. 4, No. 10. (October 2005), pp. 1636-1643.
    by DW Mount, R Pandey
    posted to analysis bioinformatics genome by skhadar on 2007-07-25 07:18:21 as *** along with 1 person Isabel
  • Discovering disease-genes by topological features in human protein-protein interaction network
    Bioinformatics, Vol. 22, No. 22. (15 November 2006), pp. 2800-2805.
    by J Xu, Y Li
    posted to analysis genome interaction protein-protein by skhadar on 2007-07-25 07:17:43 as ***** along with 2 people and 2 groups marcius ealloza BioinfoCIPF SGU-CIPF
  • Protein–Protein Interactions More Conserved within Species than across Species
    PLoS Computational Biology, Vol. 2, No. 7. (1 July 2006), e79.
    by Sven Mika, Burkhard Rost
    posted to interactions proteinprotein by skhadar on 2007-07-25 06:53:31 as read along with 3 people and 2 groups chad_davis marcius dquest BioinfoCIPF SGU-CIPF
  • Automated Querying of Genome Databases
    PLoS Computational Biology, Vol. 3, No. 1. (1 January 2007), e1.
    by Peter Schattner
    posted to databases genome by skhadar on 2007-07-25 06:50:48 as read along with 3 people mikaelhuss olympos kmdaily
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