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sobolevnrm library [6189 articles]

Статьи, недавно добавленные в библиотеку sobolevnrm .
  • Theory of Dielectric Relaxation in Polar Liquids
    The Journal of Chemical Physics, Vol. 52, No. 12. (1970), pp. 6353-6363.
    by Tsu W Nee, Robert Zwanzig
    posted to statistical_mechanics solvation electrostatics diffusion by sobolevnrm on 2008-07-17 22:39:18 as read along with 1 group baker-group
  • Electric Moments of Molecules in Liquids
    Journal of the American Chemical Society, Vol. 58, No. 8. (1936), pp. 1486-1493.
    by L Onsager
    posted to statistical_mechanics solvation electrostatics by sobolevnrm on 2008-07-17 18:32:11 as read along with 1 group baker-group
  • The Geometry Behind Numerical Solvers of the Poisson-Boltzmann Equation
    Communications in Computational Physics, Vol. 3 (2008), pp. 1032-1050.
    by X Shi, P Koehl
    posted to electrostatics computational_geometry by sobolevnrm on 2008-07-16 16:22:20 as read along with 1 group baker-group
  • Dipolar Poisson-Boltzmann Equation: Ions and Dipoles Close to Charge Interfaces
    Physical Review Letters, Vol. 99, No. 7. (2007)
    by Ariel Abrashkin, David Andelman, Henri Orland
    posted to statistical_mechanics electrostatics biomembranes by sobolevnrm on 2008-07-16 16:04:48 as read along with 1 group baker-group
  • Poisson-Boltzmann Theory for Membranes with Mobile Charged Lipids and the pH-Dependent Interaction of a DNA Molecule with a Membrane
    Biophys. J., Vol. 82, No. 1. (1 January 2002), pp. 76-92.
    by Christian Fleck, Roland R Netz, Hans H von Grunberg
    posted to solvation pka nucleic_acids electrostatics biomembranes by sobolevnrm on 2008-07-16 16:02:20 as read along with 1 person and 1 group softsimu baker-group
  • Morphological transitions of vesicles induced by AC electric fields
    Biophys. J. (16 May 2008), biophysj.108.132548.
    by Said Aranda, Karin A Riske, Reinhard Lipowsky, Rumiana Dimova
    posted to electrostatics biomembranes by sobolevnrm on 2008-07-11 12:24:06 as read along with 1 person and 1 group paulschlesinger baker-group
  • The signaling pathway of rhodopsin.
    Structure, Vol. 15, No. 5. (May 2007), pp. 611-623.
    by Y Kong, M Karplus
    posted to quasiharmonic-models_elastic-network_gnm_nma_pca_etc allostery by sobolevnrm on 2008-07-11 12:18:57 as read along with 1 person and 1 group dimka baker-group
  • From the Cover: A dry ligand-binding cavity in a solvated protein
    Proceedings of the National Academy of Sciences, Vol. 105, No. 17. (29 April 2008), pp. 6296-6301.
    by Johan Qvist, Monika Davidovic, Donald Hamelberg, Bertil Halle
    posted to solvation by sobolevnrm on 2008-07-11 12:10:08 as read along with 2 people and 3 groups barry jmccammon baker-group McCammon structural_bioinformatics
  • Signaling pathways of PDZ2 domain: A molecular dynamics interaction correlation analysis
    Proteins, Vol. in press
    by Y Kong, M Karplus
    posted to quasiharmonic-models_elastic-network_gnm_nma_pca_etc allostery by sobolevnrm on 2008-07-11 12:00:09 as read along with 1 group baker-group
  • Tortuosity and anomalous diffusion in the neuromuscular junction
    Physical Review E (Statistical, Nonlinear, and Soft Matter Physics), Vol. 77, No. 4. (2008)
    by Daniel J Lacks
    posted to neuromuscular_junctions diffusion by sobolevnrm on 2008-07-10 12:04:32 as read along with 1 group baker-group
  • Annotation-Modules: A tool for finding significant combinations of multisource annotations for gene lists.
    Bioinformatics (Oxford, England) (8 May 2008)
    by Michael Hackenberg, Rune Matthiesen
    posted to ontology bioinformatics by sobolevnrm on 2008-07-10 12:01:37 as read along with 2 people and 1 group barriot jyuh baker-group
  • Dynameomics: a multi-dimensional analysis-optimized database for dynamic protein data
    Protein Engineering, Design and Selection, Vol. 21, No. 6. (1 June 2008), pp. 379-386.
    by Catherine Kehl, Andrew M Simms, Rudesh D Toofanny, Valerie Daggett
    posted to molecular_dynamics database bioinformatics by sobolevnrm on 2008-07-10 11:58:23 as read along with 1 group baker-group
  • Dynameomics: design of a computational lab workflow and scientific data repository for protein simulations
    Protein Engineering, Design and Selection, Vol. 21, No. 6. (1 June 2008), pp. 369-377.
    by Andrew M Simms, Rudesh D Toofanny, Catherine Kehl, Noah C Benson, Valerie Daggett
    posted to molecular_dynamics database bioinformatics by sobolevnrm on 2008-07-10 11:56:38 as read along with 1 group baker-group
  • Dynameomics: mass annotation of protein dynamics and unfolding in water by high-throughput atomistic molecular dynamics simulations
    Protein Engineering, Design and Selection, Vol. 21, No. 6. (1 June 2008), pp. 353-368.
    by David A Beck, Amanda L Jonsson, Dustin R Schaeffer, Kathryn A Scott, Ryan Day, Rudesh D Toofanny, Darwin O Alonso, Valerie Daggett
    posted to protein_folding molecular_dynamics database bioinformatics by sobolevnrm on 2008-07-10 11:55:38 as read along with 1 group baker-group
  • Cell Penetrating Peptides: How Do They Do It?
    Journal of Biological Physics
    by Henry Herce, Angel Garcia
    posted to protein-membrane_interactions biomembranes by sobolevnrm on 2008-07-09 11:40:07 as read along with 1 group baker-group
  • United-Atom Acyl Chains for CHARMM Phospholipids
    J. Phys. Chem. B, Vol. 112, No. 23. (12 June 2008), pp. 7008-7015.
    by Jérôme Hénin, Wataru Shinoda, Michael L Klein
    posted to molecular_simulation molecular_dynamics biomembranes by sobolevnrm on 2008-07-09 11:35:52 as read along with 1 group baker-group
  • Role of Backbone−Solvent Interactions in Determining Conformational Equilibria of Intrinsically Disordered Proteins
    J. Am. Chem. Soc. (16 May 2008)
    by Hoang T Tran, Albert Mao, Rohit V Pappu
    posted to solvation protein_folding by sobolevnrm on 2008-07-09 11:35:18 as read along with 1 person and 1 group paulschlesinger baker-group
  • Dielectric relaxation in proteins: the computational perspective.
    Photosynthesis research (29 April 2008)
    by Thomas Simonson
    posted to solvation quantum_mechanics electrostatics by sobolevnrm on 2008-07-09 11:33:04 as read along with 1 person and 1 group dimka baker-group
  • Cholesterol Perturbs Lipid Bilayers Nonuniversally
    Physical Review Letters, Vol. 100, No. 19. (2008)
    by Jianjun Pan, Thalia T Mills, Stephanie T Nagle, John F Nagle
    posted to oxysterols ligand-membrane_interactions biomembranes by sobolevnrm on 2008-07-09 11:28:46 as read along with 2 people and 1 group paulschlesinger dchen baker-group
  • Just Give Them Grants
    Science, Vol. 320, No. 5878. (16 May 2008), 849.
    by Alan I Leshner
    posted to misc funding career by sobolevnrm on 2008-07-09 11:25:06 as read along with 2 people and 1 group applebyb dekay23 baker-group
  • Atomic level computational identification of ligand migration pathways between solvent and binding site in myoglobin
    Proceedings of the National Academy of Sciences, Vol. 105, No. 27. (2008), pp. 9204-9209.
    by JZ Ruscio, D Kumar, M Shukla, MG Prisant, TM Murali, AV Onufriev
    posted to molecular_dynamics diffusion allostery by sobolevnrm on 2008-07-09 02:31:00 as read along with 1 group baker-group
  • Assessing the performance of implicit solvation models at a nucleic acid surface
    Physical Chemistry Chemical Physics (in press)
    by F Dong, JA Wagoner, NA Baker
    posted to solvation nucleic_acids nonpolar electrostatics by sobolevnrm on 2008-07-08 12:27:15 as read along with 1 group baker-group
  • Solution of the Percus-Yevick equation for hard disks
    The Journal of Chemical Physics, Vol. 128, No. 18. (2008)
    by Adda M Bedia, E Katzav, D Vella
    posted to statistical_mechanics solvation integral_equation by sobolevnrm on 2008-07-08 12:19:31 as read along with 1 group baker-group
  • Membrane Organization and Ionization Behavior of the Minor but Crucial Lipid Ceramide-1-Phosphate
    Biophys. J., Vol. 94, No. 11. (1 June 2008), pp. 4320-4330.
    by Edgar E Kooijman, Jesus Sot, Montes, Alicia Alonso, Arne Gericke, Ben de Kruijff, Satyendra Kumar, Felix M Goni
    posted to pka biomembranes by sobolevnrm on 2008-07-08 12:07:18 as read along with 1 person and 1 group paulschlesinger baker-group
  • Membrane Thinning Effect of Curcumin
    Biophys. J. (29 February 2008), biophysj.107.126888.
    by Wei-Chin Hung, Fang-Yu Chen, Chang-Chun Lee, Yen Sun, Ming-Tao Lee, Huey W Huang
    posted to ligand-membrane_interactions ion_channels biomembranes by sobolevnrm on 2008-07-08 12:03:16 as read along with 1 person and 1 group paulschlesinger baker-group
  • An iterative boundary potential method for the infinite domain Poisson problem with interior Dirichlet boundaries
    Journal of Computational Physics, Vol. 227, No. 16. (10 August 2008), pp. 7917-7928.
    by GH Miller
    posted to mathematics electrostatics by sobolevnrm on 2008-07-08 12:02:17 as read along with 1 group baker-group
  • Multiple protein sequence alignment
    Current Opinion in Structural Biology, Vol. In Press, Corrected Proof
    by Jimin Pei
    posted to review bioinformatics by sobolevnrm on 2008-07-08 12:00:25 as read along with 4 people and 1 group marck zwang paulschlesinger TOchi baker-group
  • Effects of Trimethylamine N-Oxide (TMAO) and Crowding Agents on the Stability of RNA Hairpins
    J. Am. Chem. Soc., Vol. 130, No. 23. (11 June 2008), pp. 7364-7372.
    by David L Pincus, Changbong Hyeon, D Thirumalai
    posted to solvation nucleic_acids by sobolevnrm on 2008-07-08 11:59:21 as read along with 1 group baker-group
  • On the Manifestation of Hydrophobicity at the Nanoscale
    J. Phys. Chem. B (29 April 2008)
    by Niharendu Choudhury
    posted to solvation nonpolar by sobolevnrm on 2008-07-08 11:58:36 as read along with 1 person and 1 group paulschlesinger baker-group
  • A new method for studying the interaction between chlorpromazine and phospholipid bilayer
    Biochemical and Biophysical Research Communications, Vol. 373, No. 2. (22 August 2008), pp. 202-205.
    by Lixue Zhang, Jiyang Liu, Erkang Wang
    posted to ligand-membrane_interactions biomembranes by sobolevnrm on 2008-07-07 12:45:41 as read along with 1 group baker-group
  • Variable atomic radii for continuum-solvent electrostatics calculation
    The Journal of Chemical Physics, Vol. 129, No. 1. (2008)
    by Baojing Zhou, Manish Agarwal, Chung F Wong
    posted to solvation electrostatics by sobolevnrm on 2008-07-07 11:52:15 as read along with 1 group baker-group
  • DSC analysis of free-edged beams by an iteratively matched boundary method
    Journal of Sound and Vibration, Vol. 284, No. 1-2. (7 June 2005), pp. 487-493.
    by S Zhao, GW Wei, Y Xiang
    posted to mathematics by sobolevnrm on 2008-07-01 03:14:17 as read
  • Local adaptive differential quadrature for free vibration analysis of cylindrical shells with various boundary conditions
    International Journal of Mechanical Sciences, Vol. 48, No. 10. (October 2006), pp. 1126-1138.
    by L Zhang, Y Xiang, GW Wei
    posted to mathematics by sobolevnrm on 2008-07-01 03:12:45 as read
  • Local spectral time splitting method for first- and second-order partial differential equations
    Journal of Computational Physics, Vol. 206, No. 2. (1 July 2005), pp. 727-780.
    by Sining Yu, Shan Zhao, GW Wei
    posted to molecular_dynamics mathematics kinetics by sobolevnrm on 2008-07-01 03:10:54 as read along with 1 group baker-group
  • A windowed Fourier pseudospectral method for hyperbolic conservation laws
    Journal of Computational Physics, Vol. 214, No. 2. (20 May 2006), pp. 466-490.
    by Yuhui Sun, YC Zhou, Shu-Guang Li, GW Wei
    posted to mathematics by sobolevnrm on 2008-07-01 03:06:00 as read
  • Mathematical analysis of the wavelet method of chaos control
    Journal of Mathematical Physics, Vol. 47, No. 8. (2006)
    by Shih F Shieh, Yiqian Wang, Guowei Wei, Choy H Lai
    posted to mathematics by sobolevnrm on 2008-07-01 03:02:57 as read
  • Hsp90/p50cdc37 Is Required for Mixed-lineage Kinase (MLK) 3 Signaling
    J. Biol. Chem., Vol. 279, No. 19. (7 May 2004), pp. 19457-19463.
    by Hua Zhang, Wei Wu, Yan Du, Sarah J Santos, Susan E Conrad, Jack T Watson, Nicholas Grammatikakis, Kathleen A Gallo
    posted to misc by sobolevnrm on 2008-07-01 02:58:43 as read along with 1 group baker-group
  • Cdc42 Induces Activation Loop Phosphorylation and Membrane Targeting of Mixed Lineage Kinase 3
    J. Biol. Chem., Vol. 280, No. 52. (30 December 2005), pp. 42984-42993.
    by Yan Du, Barbara C Bock, Karen A Schachter, Mary Chao, Kathleen A Gallo
    posted to misc by sobolevnrm on 2008-07-01 02:56:56 as read along with 1 group baker-group
  • An Electrostatic Steering Mechanism of Cdc42 Recognition by Wiskott-Aldrich Syndrome Proteins
    Molecular Cell, Vol. 20, No. 2. (28 October 2005), pp. 313-324.
    by Lars Hemsath, Radovan Dvorsky, Dennis Fiegen, Marie-France Carlier, Mohammad R Ahmadian
    posted to protein-protein_interactions kinetics electrostatics diffusion by sobolevnrm on 2008-07-01 02:55:16 as read along with 1 person and 1 group mikaellund baker-group
  • Mixed-lineage kinase control of JNK and p38 MAPK pathways.
    Nat Rev Mol Cell Biol, Vol. 3, No. 9. (September 2002), pp. 663-672.
    by KA Gallo, GL Johnson
    posted to misc by sobolevnrm on 2008-07-01 02:52:04 as read along with 1 person and 1 group lna baker-group
  • Fast, efficient generation of high-quality atomic charges. AM1-BCC model: I. Method
    Journal of Computational Chemistry, Vol. 21, No. 2. (2000), pp. 132-146.
    by Araz Jakalian, Bruce L Bush, David B Jack, Christopher I Bayly
    posted to quantum_mechanics molecular_simulation molecular_dynamics electrostatics by sobolevnrm on 2008-07-01 02:49:19 as read along with 1 group baker-group
  • Fast, efficient generation of high-quality atomic charges. AM1-BCC model: II. Parameterization and validation.
    J Comput Chem, Vol. 23, No. 16. (December 2002), pp. 1623-1641.
    by A Jakalian, DB Jack, CI Bayly
    posted to quantum_mechanics molecular_simulation molecular_dynamics electrostatics by sobolevnrm on 2008-07-01 02:46:11 as read along with 2 people and 1 group lillekatt patricia baker-group
  • On the fictitious-domain and interpolation formulations of the matched interface and boundary (MIB) method
    Journal of Computational Physics, Vol. 219, No. 1. (20 November 2006), pp. 228-246.
    by YC Zhou, GW Wei
    posted to mathematics electrostatics by sobolevnrm on 2008-07-01 02:39:39 as read along with 1 group baker-group
  • High order matched interface and boundary method for elliptic equations with discontinuous coefficients and singular sources
    Journal of Computational Physics, Vol. 213, No. 1. (20 March 2006), pp. 1-30.
    by YC Zhou, Shan Zhao, Michael Feig, GW Wei
    posted to mathematics electrostatics by sobolevnrm on 2008-07-01 02:37:16 as read along with 1 group baker-group
  • High-order FDTD methods via derivative matching for Maxwell's equations with material interfaces
    Journal of Computational Physics, Vol. 200, No. 1. (10 October 2004), pp. 60-103.
    by Shan Zhao, GW Wei
    posted to mathematics electrostatics by sobolevnrm on 2008-07-01 02:33:13 as read along with 1 group baker-group
  • Matched interface and boundary (MIB) method for elliptic problems with sharp-edged interfaces
    Journal of Computational Physics, Vol. 224, No. 2. (10 June 2007), pp. 729-756.
    by Sining Yu, Yongcheng Zhou, GW Wei
    posted to solvation mathematics electrostatics by sobolevnrm on 2008-07-01 02:31:14 as read along with 1 group baker-group
  • A Level Set Formulation for the Solution of the Dirichlet Problem for Hamilton--Jacobi Equations
    SIAM Journal on Mathematical Analysis, Vol. 24, No. 5. (1993), pp. 1145-1152.
    by Stanley Osher
    posted to mathematics by sobolevnrm on 2008-07-01 02:26:27 as read along with 1 group baker-group
  • Fronts propagating with curvature-dependent speed: algorithms based on Hamilton-Jacobi formulations
    J. Comput. Phys., Vol. 79, No. 1. (November 1988), pp. 12-49.
    by Stanley Osher, James A Sethian
    posted to mathematics by sobolevnrm on 2008-07-01 02:24:41 as read along with 2 people and 1 group gerardotp kutabar baker-group
  • Nonlinear total variation based noise removal algorithms
    (1992), pp. 259-268.
    by Leonid I Rudin, Stanley Osher, Emad Fatemi
    posted to mathematics by sobolevnrm on 2008-07-01 02:21:35 as ** along with 1 person and 1 group derinb baker-group
  • Discrete surface modelling using partial differential equations
    Computer Aided Geometric Design, Vol. 23, No. 2. (February 2006), pp. 125-145.
    by Guoliang Xu, Qing Pan, Chandrajit L Bajaj
    posted to mathematics by sobolevnrm on 2008-07-01 02:19:15 as read along with 1 group baker-group
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