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sobolevnrm Shi [17 articles]

Recent papers posted to sobolevnrm library by the author Shi. You can also see Shi everyone.
  • The Geometry Behind Numerical Solvers of the Poisson-Boltzmann Equation
    Communications in Computational Physics, Vol. 3 (2008), pp. 1032-1050.
    by X Shi, P Koehl
    posted to computationalgeometry electrostatics by sobolevnrm on 2008-07-16 16:22:20 as read along with 1 group baker-group
  • NMR Structure of the Cathelicidin-Derived Human Antimicrobial Peptide LL-37 in Dodecylphosphocholine Micelles
    Biochemistry (26 April 2008)
    by Fernando Porcelli, Raffaello Verardi, Lei Shi, Katherine A Henzler-Wildman, Ayyalusamy Ramamoorthy, Gianluigi Veglia
    posted to protein-membrane_interactions nmr biomembranes by sobolevnrm on 2008-06-30 11:33:18 as read along with 1 person and 1 group paulschlesinger baker-group
  • Molecular dynamics simulations of peptides and proteins with amplified collective motions.
    Biophys J, Vol. 84, No. 6. (June 2003), pp. 3583-3593.
    by Z Zhang, Y Shi, H Liu
    posted to quasiharmonic-models_elastic-network_gnm_nma_pca_etc enhanced_sampling by sobolevnrm on 2008-05-27 16:03:06 as read along with 2 people and 1 group baaden aqeel baker-group
  • Reassessing a sparse energetic network within a single protein domain
    Proceedings of the National Academy of Sciences (13 March 2008), 0711732105.
    by Celestine N Chi, Lisa Elfstrom, Yao Shi, Tord Snall, Ake Engstrom, Per Jemth
    posted to correlatedmutations allostery by sobolevnrm on 2008-04-30 11:02:56 as read along with 4 people and 1 group apaydin cjeans cactus sunhwan baker-group
  • Electrostatic Ligand Coatings of Nanoparticles Enable Ligand-Specific Gene Delivery to Human Primary Cells
    Nano Lett., Vol. 7, No. 4. (11 April 2007), pp. 874-879.
    by JJ Green, E Chiu, ES Leshchiner, J Shi, R Langer, DG Anderson
    posted to drugdesign ccne nanotech by sobolevnrm on 2008-03-05 11:56:43 as read along with 1 person and 1 group ml115 baker-group
  • Divalent Cation Adsorption on the Actin Monomer
    J. Phys. Chem. C, Vol. 111, No. 43. (1 November 2007), pp. 15642-15652.
    by W Shi, MV Inamdar, AM Sastry, CM Lastoskie
    posted to electrostatics protein-ligand_interactions solvation by sobolevnrm on 2007-10-29 11:25:37 as read along with 1 group baker-group
  • Measurement of Solvation Responses at Multiple Sites in a Globular Protein
    Journal of Physical Chemistry B (in press)
    by P Abbyad, X Shi, W Childs, TB Mcananey, BE Cohen, Boxer
    posted to electrostatics experimental_methodology solvation by sobolevnrm on 2007-07-02 13:18:46 as read along with 1 group baker-group
  • Effective attraction interactions between like-charge macroions bound to binary fluid lipid membranes
    Journal of Chemical Physics, Vol. 126 (2007)
    by XQ Shi, YQ Ma
    posted to biomembranes solvation statistical_mechanics by sobolevnrm on 2007-05-25 14:36:49 as read along with 1 group baker-group
  • Molecular dynamics simulation of the density and surface tension of water by particle-particle particle-mesh method
    Journal of Chemical Physics, Vol. 124 (2006)
    by B Shi, S Sinha, VK Dhir
    posted to solvation by sobolevnrm on 2007-05-25 14:22:46 as read along with 1 group baker-group
  • An RNA sensor for intracellular Mg2+
    Cell, Vol. 125 (2006), pp. 71-84.
    by MJ Cromie, Y Shi, T Latifi, EA Groisman
    posted to nucleic_acids by sobolevnrm on 2007-05-25 14:22:45 as read along with 1 group baker-group
  • Nanosecond Dynamics of the Mouse Acetylcholinesterase Cys69âCys96 Omega Loop
    Journal of Biological Chemistry, Vol. 278, No. 33. (2003), pp. 30905-11.
    by J Shi, K Tai, JA Mccammon, P Taylor, DA Johnson
    posted to acetylcholinesterase by sobolevnrm on 2007-05-25 14:22:19 as read along with 1 group baker-group
  • Multi-Scale Modeling of Phase Separation in Mixed Lipid Bilayers
    Biophysical Journal, Vol. 89, No. 4. (2005), pp. 2385-94.
    by Q Shi, GA Voth
    posted to biomembranes multiscale by sobolevnrm on 2007-05-25 14:18:44 as read along with 1 group baker-group
  • A Stochastic Dynamics Simulation Study Associated with Hydration Force and Friction Memory Effect
    Journal of Physical Chemistry B, Vol. 104, No. 29. (2000), pp. 6877-83.
    by BZ Lu, CX Wang, WZ Chen, SZ Wan, YY Shi
    posted to electrostatics solvation by sobolevnrm on 2007-05-25 14:09:31 as read along with 1 group baker-group
  • Incorporating Hydration Force Determined by Boundary Element Method into Stochastic Dynamics
    Journal of Physical Chemistry B, Vol. 101, No. 2. (1997), pp. 230-235.
    by CX Wang, SZ Wan, ZX Xiang, YY Shi
    posted to electrostatics by sobolevnrm on 2007-05-25 14:08:12 as read along with 1 group baker-group
  • Reversibly Bound and Covalently Attached Ligands Induce Conformational Changes in the Omega Loop, Cys69-Cys96, of Mouse Acetylcholinesterase
    Journal of Biological Chemistry, Vol. 276, No. 45. (2001), pp. 42196-42204.
    by J Shi, AE Boyd, Z Radic, P Taylor
    posted to acetylcholinesterase allostery by sobolevnrm on 2007-05-25 14:01:00 as read along with 1 group baker-group
  • Inhibitors of Different Structure Induce Distinguishing Conformations in the Omega Loop, Cys69-Cys96, of Mouse Acetylcholinesterase
    Journal of Biological Chemistry, Vol. 277, No. 45. (2002), pp. 43301-43308.
    by J Shi, Z Radic, P Taylor
    posted to acetylcholinesterase by sobolevnrm on 2007-05-25 14:01:00 as read along with 1 group baker-group
  • FUGUE: sequence-structure homology recognition using environment-specific substitution tables and structure-dependent gap penalties
    J Mol Biol, Vol. 310, No. 1. (2001), pp. 243-57.
    by J Shi, TL Blundell, K Mizuguchi
    posted to bioinformatics software structure_prediction by sobolevnrm on 2007-05-25 13:55:02 as read along with 1 group baker-group
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