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softsimu library [5654 articles]

Статьи, недавно добавленные в библиотеку softsimu .
  • Inhibition of human liver catechol-O-methyltransferase by tea catechins and their metabolites: Structure-activity relationship and molecular-modeling studies
    Biochemical Pharmacology, Vol. 69, No. 10. (15 May 2005), pp. 1523-1531.
    by Dapeng Chen, Ching Y Wang, Joshua D Lambert, Ni Ai, William J Welsh, Chung S Yang
    posted to comt by softsimu on 2008-06-30 20:54:25 as **
  • Bead--bead interaction parameters in dissipative particle dynamics: Relation to bead-size, solubility parameter, and surface tension
    The Journal of Chemical Physics, Vol. 120, No. 3. (2004), pp. 1594-1601.
    by Amitesh Maiti, Simon Mcgrother
    posted to dpd by softsimu on 2008-06-30 20:34:24 as **
  • Lipid Rafts: Feeling is Believing
    News Physiol. Sci., Vol. 19 (2004), pp. 39-43.
    by Henderson, JM Edwardson, NA Geisse, Saslowsky
    posted to rafts by softsimu on 2008-06-27 22:13:28 as **
  • The equilibrium of phosphatidylcholine-cholesterol in monolayers at the air/water interface
    Colloids and Surfaces B: Biointerfaces, Vol. 23, No. 1. (January 2002), pp. 51-58.
    by Izabela Brzozowska, Zbigniew A Figaszewski
    posted to monolayers cholesterol by softsimu on 2008-06-27 22:10:09 as **
  • Gating Mechanisms of Mechanosensitive Channels of Large Conductance, II: Systematic Study of Conformational Transitions
    Biophys. J., Vol. 95, No. 2. (15 July 2008), pp. 581-596.
    by Yuye Tang, Jejoong Yoo, Arun Yethiraj, Qiang Cui, Xi Chen
    posted to gating channels by softsimu on 2008-06-27 22:08:00 as **
  • On the Construction and Comparison of Difference Schemes
    SIAM Journal on Numerical Analysis, Vol. 5, No. 3. (1968), pp. 506-517.
    by Gilbert Strang
    posted to trotter integration by softsimu on 2008-06-27 21:55:46 as **
  • Self-consistent dissipative particle dynamics algorithm
    EPL (Europhysics Letters), Vol. 42, No. 4. (1998), pp. 377-382.
    by I Pagonabarraga, MHJ Hagen, D Frenkel
    posted to dpd by softsimu on 2008-06-27 21:54:58 as **
  • A stochastic Trotter integration scheme for dissipative particle dynamics
    Mathematics and Computers in Simulation, Vol. 72, No. 2-6. (9 September 2006), pp. 190-194.
    by M Serrano, G De Fabritiis, P Español, PV Coveney
    posted to dpd by softsimu on 2008-06-27 21:54:16 as **
  • Dynamical regimes in the dissipative particle dynamics model
    Physical Review E, Vol. 59, No. 6. (1 June 1999), 6340.
    by Pep Español, Mar Serrano
    posted to dpd by softsimu on 2008-06-27 21:45:41 as **
  • Hydrodynamics from dissipative particle dynamics
    Physical Review E, Vol. 52, No. 2. (1995), 1734.
    by Pep Español
    posted to hydrodynamics dpd by softsimu on 2008-06-27 21:45:03 as **
  • Scaling of the time-dependent self-diffusion coefficient and the propagation of hydrodynamic interactions
    Physical Review E, Vol. 51, No. 1. (1 January 1995), 803.
    by Pep Español, Miguel A Rubio, Ignacio Zúñiga
    posted to dpd diffusion by softsimu on 2008-06-27 21:44:38 as **
  • Dissipative particle dynamics for a harmonic chain: A first-principles derivation
    Physical Review E, Vol. 53, No. 2. (1 February 1996), 1572.
    by Pep Español
    posted to dpd by softsimu on 2008-06-27 21:44:17 as **
  • Thermodynamically Admissible Form for Discrete Hydrodynamics
    Physical Review Letters, Vol. 83, No. 22. (29 November 1999), 4542.
    by Pep Español, Mar Serrano, Hans C Öttinger
    posted to generic coarse-graining by softsimu on 2008-06-27 21:44:04 as **
  • Thermodynamically consistent mesoscopic fluid particle model
    Physical Review E, Vol. 64, No. 4. (2001), 046115.
    by Mar Serrano, Pep Español
    posted to sph generic dpd by softsimu on 2008-06-27 21:43:41 as **
  • Smoothed dissipative particle dynamics
    Physical Review E, Vol. 67, No. 2. (26 February 2003), 026705.
    by Pep Español, Mariano Revenga
    posted to sph dpd by softsimu on 2008-06-27 21:43:27 as **
  • Smoothed particle hydrodynamics model for phase separating fluid mixtures. I. General equations
    Physical Review E (Statistical, Nonlinear, and Soft Matter Physics), Vol. 72, No. 1. (2005)
    by Cedric Thieulot, LPBM Janssen, Pep E Nol
    posted to sph by softsimu on 2008-06-27 21:42:57 as **
  • Shadow mass and the relationship between velocity and momentum in symplectic numerical integration
    Physical Review E, Vol. 61, No. 4. (1 April 2000), 4587.
    by Jason Gans, David Shalloway
    posted to integrators dpd by softsimu on 2008-06-27 20:47:57 as **
  • Molecular simulations of mesoscopic bilayer phases
    Physical Review E, Vol. 67, No. 6. (18 June 2003), 060901.
    by Marieke Kranenburg, Maddalena Venturoli, Berend Smit
    posted to dpd by softsimu on 2008-06-27 20:46:51 as **
  • Configurational Temperature in Membrane Simulations Using Dissipative Particle Dynamics
    J. Phys. Chem. B, Vol. 110, No. 8. (2 March 2006), pp. 3823-3830.
    by MP Allen
    posted to dpd by softsimu on 2008-06-27 20:43:38 as **
  • RSH/Smith-Lemli-Opitz Syndrome: A Multiple Congenital Anomaly/Mental Retardation Syndrome due to an Inborn Error of Cholesterol Biosynthesis
    Molecular Genetics and Metabolism, Vol. 71, No. 1-2. (September 2000), pp. 163-174.
    by Forbes D Porter
    posted to diseases cholesterol by softsimu on 2008-06-27 19:44:49 as **
  • Simulation study of lateral diffusion in lipid-sterol bilayer mixtures
    The European Physical Journal E - Soft Matter, Vol. 5, No. 4. (19 July 2001), pp. 485-497.
    by JM Polson, I Vattulainen, H Zhu, MJ Zuckermann
    posted to cholesterol by softsimu on 2008-06-27 19:43:46 as **
  • The permeability and the effect of acyl-chain length for phospholipid bilayers containing cholesterol: theory and experiment
    Biochimica et Biophysica Acta (BBA) - Biomembranes, Vol. 1107, No. 2. (30 June 1992), pp. 261-270.
    by E Corvera, OG Mouritsen, MA Singer, MJ Zuckermann
    posted to cholesterol by softsimu on 2008-06-27 19:43:18 as **
  • Condensed complexes of cholesterol and phospholipids
    Biochimica et Biophysica Acta (BBA) - Biomembranes, Vol. 1610, No. 2. (10 March 2003), pp. 159-173.
    by Harden M Mcconnell, Arun Radhakrishnan
    posted to rafts cholesterol by softsimu on 2008-06-27 19:42:43 as **
  • Cholesterol Rules: DIRECT OBSERVATION OF THE COEXISTENCE OF TWO FLUID PHASES IN NATIVE PULMONARY SURFACTANT MEMBRANES AT PHYSIOLOGICAL TEMPERATURES
    J. Biol. Chem., Vol. 279, No. 39. (24 September 2004), pp. 40715-40722.
    by Bernardino, Jesus Perez-Gil, Adam C Simonsen, Luis A Bagatolli
    posted to lung-surfactant cholesterol by softsimu on 2008-06-27 19:42:14 as **
  • Role of cholesterol in lipid raft formation: lessons from lipid model systems
    Biochimica et Biophysica Acta (BBA) - Biomembranes, Vol. 1610, No. 2. (10 March 2003), pp. 174-183.
    by John R Silvius
    posted to rafts cholesterol by softsimu on 2008-06-27 19:41:43 as **
  • The Effect of Sterol Structure on Membrane Lipid Domains Reveals How Cholesterol Can Induce Lipid Domain Formation
    Biochemistry, Vol. 39, No. 5. (8 February 2000), pp. 843-849.
    by X Xu, E London
    posted to rafts cholesterol by softsimu on 2008-06-27 19:40:54 as **
  • Cholesterol-phospholipid interactions, the liquid-ordered phase and lipid rafts in model and biological membranes
    Current Opinion in Colloid & Interface Science, Vol. 8, No. 6. (April 2004), pp. 459-468.
    by Todd P Mcmullen, Ruthven N Lewis, Ronald N Mcelhaney
    posted to cholesterol by softsimu on 2008-06-27 19:40:24 as **
  • From Lanosterol to Cholesterol: Structural Evolution and Differential Effects on Lipid Bilayers
    Biophys. J., Vol. 82, No. 3. (1 March 2002), pp. 1429-1444.
    by Ling Miao, Morten Nielsen, Jenifer Thewalt, John H Ipsen, Myer Bloom, Martin J Zuckermann, Ole G Mouritsen
    posted to lanosterol cholesterol by softsimu on 2008-06-27 19:39:35 as **
  • Why do worms need cholesterol?
    Nature cell biology, Vol. 5, No. 8. (August 2003), pp. 684-688.
    by TV Kurzchalia, S Ward
    posted to cholesterol by softsimu on 2008-06-27 19:38:22 as **
  • Lipids do influence protein function--the hydrophobic matching hypothesis revisited
    Biochimica et Biophysica Acta (BBA) - Biomembranes, Vol. 1666, No. 1-2. (3 November 2004), pp. 205-226.
    by Morten Jensen, Ole G Mouritsen
    posted to hydrophobic by softsimu on 2008-06-27 19:37:54 as **
  • What's so special about cholesterol?
    Lipids, Vol. 39, No. 11. (17 November 2004), pp. 1101-1113.
    by Ole Mouritsen, Martin Zuckermann
    posted to cholesterol by softsimu on 2008-06-27 19:37:13 as **
  • A Quantitative Coarse-Grain Model for Lipid Bilayers
    J. Phys. Chem. B, Vol. 112, No. 3. (24 January 2008), pp. 802-815.
    by M Orsi, DY Haubertin, WE Sanderson, JW Essex
    posted to coarse-graining by softsimu on 2008-06-27 19:34:14 as ** along with 2 people and 1 group sobolevnrm paulschlesinger baker-group
  • Identification of Possible Sources of Nanotoxicity from Carbon Nanotubes Inserted into Membrane Bilayers Using Membrane Interaction Quantitative Structure−Activity Relationship Analysis
    Chem. Res. Toxicol., Vol. 21, No. 2. (18 February 2008), pp. 459-466.
    by Jianzhong Liu, Anton J Hopfinger
    posted to nanoparticles by softsimu on 2008-06-27 19:33:35 as **
  • Counterion Distribution and ζ-Potential in PAMAM Dendrimer
    Macromolecules (10 June 2008)
    by Prabal K Maiti, René Messina
    posted to dendrimers by softsimu on 2008-06-27 19:32:36 as **
  • An Equilibrium Method for Continuous-Flow Cell Sorting Using Dielectrophoresis
    Anal. Chem. (26 March 2008)
    by MD Vahey, J Voldman
    posted to dep by softsimu on 2008-06-27 19:30:22 as **
  • Differential Effects of Cholesterol and its Immediate Biosynthetic Precursors on Membrane Organization
    Biochemistry (29 April 2008)
    by Sandeep:paila Shrivastava
    posted to dchol 7-dehydrocholesterol by softsimu on 2008-06-27 19:29:51 as ** along with 2 people and 1 group sobolevnrm paulschlesinger baker-group
  • The MARTINI Coarse-Grained Force Field: Extension to Proteins
    J. Chem. Theory Comput. (16 April 2008)
    by Luca Monticelli, Senthil K Kandasamy, Xavier Periole, Ronald G Larson, Peter D Tieleman, Siewert-Jan Marrink
    posted to martini coarse-graining by softsimu on 2008-06-27 19:29:01 as ** along with 5 people and 1 group Ema aqeel DanielParton sobolevnrm middledomain baker-group
  • Effects of Carboxylate-Modified, “Green” Inulin Biopolymers on the Crystal Growth of Calcium Oxalate
    Cryst. Growth Des., Vol. 8, No. 6. (4 June 2008), pp. 1997-2005.
    by Bora Akın, Mualla Öner, Yasemin Bayram, Konstantinos D Demadis
    posted to mineralization caox by softsimu on 2008-06-27 19:27:55 as **
  • Monitoring Biological Membrane-Potential Changes: A CI QM/MM Study
    J. Phys. Chem. B, Vol. 112, No. 8. (28 February 2008), pp. 2445-2455.
    by CF Rusu, H Lanig, OG Othersen, C Kryschi, T Clark
    posted to qm-mm by softsimu on 2008-06-27 19:23:49 as ** along with 1 person and 1 group sobolevnrm baker-group
  • Energetics of Cholesterol Transfer between Lipid Bilayers.
    J Phys Chem B (29 February 2008)
    by Zhancheng Zhang, Lanyuan Lu, Max L Berkowitz
    posted to free-energy cholesterol by softsimu on 2008-06-27 19:22:43 as ** along with 2 people and 1 group dimka sobolevnrm baker-group
  • Constrained Isothermal-Isobaric Molecular Dynamics with Full Atomic Virial
    J. Phys. Chem. B, Vol. 105, No. 28. (19 July 2001), pp. 6710-6715.
    by G Ciccotti, GJ Martyna, S Melchionna, ME Tuckerman
    posted to md by softsimu on 2008-06-27 19:20:00 as **
  • Structure of Aqueous Proline via Parallel Tempering Molecular Dynamics and Neutron Diffraction
    J. Phys. Chem. B, Vol. 111, No. 28. (19 July 2007), pp. 8210-8222.
    by RZ Troitzsch, GJ Martyna, SE Mclain, AK Soper, J Crain
    posted to proline parallel-tempering by softsimu on 2008-06-27 19:19:35 as **
  • Understanding Modern Molecular Dynamics: Techniques and Applications
    J. Phys. Chem. B, Vol. 104, No. 2. (20 January 2000), pp. 159-178.
    by ME Tuckerman, GJ Martyna
    posted to md by softsimu on 2008-06-27 19:18:36 as ** along with 1 person luisand
  • Structure and internal dynamics of a side chain liquid crystalline polymer in various phases by molecular dynamics simulations: A step towards coarse graining
    The Journal of Chemical Physics, Vol. 126, No. 17. (2007)
    by Jaroslav M Ilnytskyi, Dieter Neher
    posted to dpd by softsimu on 2008-06-27 17:02:55 as **
  • Plasma membrane-associated proteins are clustered into islands attached to the cytoskeleton.
    Proc Natl Acad Sci U S A (4 December 2006)
    by Björn F F Lillemeier, Janet R R Pfeiffer, Zurab Surviladze, Bridget S S Wilson, Mark M M Davis
    posted to rafts domains by softsimu on 2008-06-26 19:37:51 as ** along with 1 person lenkei
  • Coupled composition-deformation phase-field method for multicomponent lipid membranes
    Physical Review E (Statistical, Nonlinear, and Soft Matter Physics), Vol. 76, No. 1. (2007)
    by Chloe M Funkhouser, Francisco J Solis, K Thornton
    posted to rafts domains by softsimu on 2008-06-26 19:36:56 as ** along with 1 person and 1 group sobolevnrm baker-group
  • Modulated phases in multicomponent fluid membranes
    Physical Review E, Vol. 60, No. 4. (1 October 1999), 4610.
    by Sunil PB Kumar, G Gompper, R Lipowsky
    posted to rafts domains by softsimu on 2008-06-26 19:36:35 as **
  • Coupling Field Theory with Mesoscopic Dynamical Simulations of Multicomponent Lipid Bilayers
    Biophys. J., Vol. 87, No. 5. (1 November 2004), pp. 3242-3263.
    by Liam J Mcwhirter, Gary Ayton, Gregory A Voth
    posted to rafts domains by softsimu on 2008-06-26 19:36:19 as **
  • Nonequilibrium Raftlike Membrane Domains under Continuous Recycling
    Physical Review Letters, Vol. 95, No. 16. (2005)
    by Matthew S Turner, Pierre Sens, Nicholas D Socci
    posted to rafts domains by softsimu on 2008-06-26 19:36:00 as **
  • Direct Observation of Lipid Domains in Free-Standing Bilayers Using Two-Photon Excitation Fluorescence Microscopy
    Journal of Fluorescence, Vol. 11, No. 3. (2001), pp. 141-160.
    by Luis A Bagatolli, Enrico Gratton
    posted to rafts by softsimu on 2008-06-26 19:35:38 as **
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