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srp33 library [142 articles]

Статьи, недавно добавленные в библиотеку srp33 .
  • In silico dissection of cell-type-associated patterns of gene expression in prostate cancer — PNAS
    posted to tissue_heterogeneity by srp33 on 2008-07-15 17:40:11 as **
  • A Comparative Study of Discretization Methods for Naive-Bayes Classifiers
    by Ying Yang, Geoffrey I Webb
    posted to naive_bayes discretization bayesian_networks by srp33 on 2008-07-15 17:37:59 as **
  • A Module Map Showing Conditional Activity of Expression Modules in Cancer
    by E Segal, N Friedman, D Koller, A Regev
    posted to pathway_analysis network_reconstruction gene_sets data_aggregation by srp33 on 2008-07-15 17:32:48 as **
  • Automatic Indexing: An Experimental Inquiry
    J. ACM, Vol. 8, No. 3. (July 1961), pp. 404-417.
    by ME Maron
    posted to naive_bayes by srp33 on 2008-07-03 18:21:41 as ** along with 1 person aaronhalfaker
  • Common variants on chromosome 5p12 confer susceptibility to estrogen receptor–positive breast cancer
    Nature Genetics, Vol. 40, No. 6. (27 April 2008), pp. 703-706.
    by Simon N Stacey, Andrei Manolescu, Patrick Sulem, Steinunn Thorlacius, Sigurjon A Gudjonsson, Gudbjörn F Jonsson, Margret Jakobsdottir, Jon T Bergthorsson, Julius Gudmundsson, Katja K Aben, Luc J Strobbe, Dorine W Swinkels, Anton KC van Engelenburg, Brian E Henderson, Laurence N Kolonel, Loic Le Marchand, Esther Millastre, Raquel Andres, Berta Saez, Julio Lambea, Javier Godino, Eduardo Polo, Alejandro Tres, Simone Picelli, Johanna Rantala, Sara Margolin, Thorvaldur Jonsson, Helgi Sigurdsson, Thora Jonsdottir, Jon Hrafnkelsson, Jakob Johannsson, Thorarinn Sveinsson, Gardar Myrdal, Hlynur N Grimsson, Steinunn G Sveinsdottir, Kristin Alexiusdottir, Jona Saemundsdottir, Asgeir Sigurdsson, Jelena Kostic, Larus Gudmundsson, Kristleifur Kristjansson, Gisli Masson, James D Fackenthal, Clement Adebamowo, Temidayo Ogundiran, Olufunmilayo I Olopade, Christopher A Haiman, Annika Lindblom, Jose I Mayordomo, Lambertus A Kiemeney, Jeffrey R Gulcher, Thorunn Rafnar, Unnur Thorsteinsdottir, Oskar T Johannsson, Augustine Kong, Kari Stefansson
    posted to genome_wide_association_study breast_cancer by srp33 on 2008-07-02 19:55:02 as **
  • A map of human cancer signaling
    Mol Syst Biol, Vol. 3 (18 December 2007)
    by Qinghua Cui, Yun Ma, Maria Jaramillo, Hamza Bari, Arif Awan, Song Yang, Simo Zhang, Lixue Liu, Meng Lu, Maureen O'Connor-Mccourt, Enrico O Purisima, Edwin Wang
    posted to pathway_analysis network_reconstruction by srp33 on 2008-07-01 15:31:58 as ** along with 5 people tmmurali ealloza cjeans Ema renatomilani
  • A comparative study of feature selection and multiclass classification methods for tissue classification based on gene expression.
    Bioinformatics, Vol. 20, No. 15. (12 October 2004), pp. 2429-2437.
    by T Li, C Zhang, M Ogihara
    posted to microarray feature_selection by srp33 on 2008-06-30 17:51:44 as ** along with 2 people ujh chiahuey
  • A molecular signature of metastasis in primary solid tumors
    Nat Genet, Vol. 33, No. 1. (January 2003), pp. 49-54.
    by Sridhar Ramaswamy, Ken N Ross, Eric S Lander, Todd R Golub
    posted to microarray hierarchical_clustering feature_selection by srp33 on 2008-06-30 16:40:22 as **
  • Tuning ReliefF for Genome-Wide Genetic Analysis
    Evolutionary Computation,Machine Learning and Data Mining in Bioinformatics (2007), pp. 166-175.
    by Jason Moore, Bill White
    posted to genome_wide_association_study feature_selection by srp33 on 2008-06-30 16:03:50 as **
  • network fragments
    posted to object_oriented bayesian_networks by srp33 on 2008-06-27 18:42:10 as **
  • Discretization: An Enabling Technique
    Data Mining and Knowledge Discovery, Vol. 6, No. 4. (1 October 2002), pp. 393-423.
    by Huan Liu, Farhad Hussain, Chew L Tan, Manoranjan Dash
    posted to machine_learning discretization by srp33 on 2008-06-24 00:10:11 as **
  • Supervised and Unsupervised Discretization of Continuous Features
    (1995), pp. 194-202.
    by James Dougherty, Ron Kohavi, Mehran Sahami
    posted to machine_learning discretization by srp33 on 2008-06-24 00:07:53 as ** along with 5 people and 1 group robincha rogerblake santi515 mistahjellyfish navil ARTFL
  • Parameter Learning in Object-Oriented Bayesian Networks
    Annals of Mathematics and Artificial Intelligence, Vol. 32, No. 1. (2001), pp. 221-243.
    by Helge Langseth, Olav Bangsø
    posted to object_oriented bayesian_networks by srp33 on 2008-06-19 19:39:16 as **
  • Global variation in copy number in the human genome
    Nature, Vol. 444, No. 7118. (23 November 2006), pp. 444-454.
    by Richard Redon, Shumpei Ishikawa, Karen R Fitch, Lars Feuk, George H Perry, Daniel T Andrews, Heike Fiegler, Michael H Shapero, Andrew R Carson, Wenwei Chen, Eun K Cho, Stephanie Dallaire, Jennifer L Freeman, Juan R Gonzalez, Monica Gratacos, Jing Huang, Dimitrios Kalaitzopoulos, Daisuke Komura, Jeffrey R Macdonald, Christian R Marshall, Rui Mei, Lyndal Montgomery, Kunihiro Nishimura, Kohji Okamura, Fan Shen, Martin J Somerville, Joelle Tchinda, Armand Valsesia, Cara Woodwark, Fengtang Yang, Junjun Zhang, Tatiana Zerjal, Jane Zhang, Lluis Armengol, Donald F Conrad, Xavier Estivill, Chris Tyler-Smith, Nigel P Carter, Hiroyuki Aburatani, Charles Lee, Keith W Jones, Stephen W Scherer, Matthew E Hurles
    posted to copy_number_variation by srp33 on 2008-06-18 23:17:21 as ** along with 25 people and 6 groups pradiptaray daed Ema bpb jfr balajis dpollard mtagaya adepace aswin rdiaz qfwills ealloza vplagnol giovanni jeremymiller frohike vpschulz raiyar ramensky ccr azazello dbgrant colinveal xingxu Bioinformatics EisenLab BioinfoCIPF GeschwindLab steinmetzlab MBLAB
  • Integrative analysis of genome-wide experiments in the context of a large high-throughput data compendium
    Molecular Systems Biology, Vol. 1, No. 1. (29 March 2005), pp. msb4100005-E1-msb4100005-E10.
    by Amos Tanay, Israel Steinfeld, Martin Kupiec, Ron Shamir
    posted to data_aggregation by srp33 on 2008-06-18 16:59:36 as ** along with 4 people tvdbulck tmmurali jfr natstreet
  • Integrating large-scale functional genomic data to dissect the complexity of yeast regulatory networks : Abstract : Nature Genetics
    by Jun
    posted to data_aggregation by srp33 on 2008-06-18 16:57:53 as ** along with 1 person marck
  • Common and rare variants in multifactorial susceptibility to common diseases
    Nat Genet, Vol. 40, No. 6. (June 2008), pp. 695-701.
    by Walter Bodmer, Carolina Bonilla
    posted to risk_prediction genome_wide_association_study by srp33 on 2008-06-11 23:39:26 as ** along with 1 person daed
  • Meta-analysis of several gene lists for distinct types of cancer: A simple way to reveal common prognostic markers
    BMC Bioinformatics, Vol. 8 (06 April 2007), 118.
    by Xinan Yang, Xiao Sun
    posted to meta-analysis by srp33 on 2008-06-11 23:35:34 as ** along with 4 people and 1 group jfr ealloza shigepong ugengma BioinfoCIPF
  • Meta-analysis and Combining Information in Genetics and Genomics (Interdisciplinary Statistics)
    (15 August 2008)
    by Rudy Guerra, David B Allison, Darlene Goldstein
    posted to meta-analysis by srp33 on 2008-06-11 23:33:20 as ** along with 1 person akastrin
  • Classifying Variants of Undetermined Significance in BRCA2 with Protein Likelihood Ratios
    by Rachel
    posted to protein_impact_analysis by srp33 on 2008-06-11 23:27:37 as **
  • Selective integration of multiple biological data for supervised network inference
    Bioinformatics, Vol. 21, No. 10. (15 May 2005), pp. 2488-2495.
    by Tsuyoshi Kato, Koji Tsuda, Kiyoshi Asai
    posted to pathway_analysis data_aggregation by srp33 on 2008-05-30 20:39:39 as **
  • Integrating genetic and gene expression data: application to cardiovascular and metabolic traits in mice.
    Mamm Genome, Vol. 17, No. 6. (June 2006), pp. 466-479.
    by TA Drake, EE Schadt, AJ Lusis
    posted to microarray data_aggregation by srp33 on 2008-05-30 20:22:46 as ** along with 2 people koller jo_davies
  • Using Bayesian networks to analyze expression data.
    J Comput Biol, Vol. 7, No. 3-4. (2000), pp. 601-620.
    by N Friedman, M Linial, I Nachman, D Pe'er
    posted to microarray bayesian_networks by srp33 on 2008-05-30 19:56:15 as ** along with 7 people brl ldfu dragonrez Schmidtc wnpx helsley heliopais
  • Scalable Techniques for Mining Causal Structures
    Data Mining and Knowledge Discovery, Vol. 4, No. 2. (10 July 2000), pp. 163-192.
    by Craig Silverstein, Sergey Brin, Rajeev Motwani, Jeff Ullman
    posted to causality bayesian_networks association_rule_mining by srp33 on 2008-05-29 23:00:59 as **
  • A Causal Mapping Approach to Constructing Bayesian Networks
    by Sucheta Nadkarni, Prakash P Shenoy
    posted to bayesian_networks by srp33 on 2008-05-29 22:39:19 as **
  • Gene expression profiling identifies molecular subtypes of gliomas.
    Oncogene, Vol. 22, No. 31. (31 July 2003), pp. 4918-4923.
    by R Shai, T Shi, TJ Kremen, S Horvath, LM Liau, TF Cloughesy, PS Mischel, SF Nelson
    posted to microarray clustering classification brain_cancer by srp33 on 2008-05-29 22:28:33 as ** along with 1 person and 1 group jeremymiller GeschwindLab
  • DNA methylation in brain development and gliomagenesis.
    Frontiers in bioscience : a journal and virtual library, Vol. 8 (1 January 2003)
    by JF Costello
    posted to methylation brain_cancer by srp33 on 2008-05-29 20:40:53 as **
  • A causal mapping approach to constructing Bayesian networks
    Decision Support Systems, Vol. 38, No. 2. (November 2004), pp. 259-281.
    by Sucheta Nadkarni, Prakash P Shenoy
    posted to network_reconstruction bayesian_networks by srp33 on 2008-05-29 19:33:41 as ** along with 1 person holidaynow
  • Combining microarrays and biological knowledge for estimating gene networks via Bayesian networks
    Bioinformatics Conference, 2003. CSB 2003. Proceedings of the 2003 IEEE (2003), pp. 104-113.
    by S Imoto, T Higuchi, T Goto, K Tashiro, S Kuhara, S Miyano
    posted to prior_knowledge bayesian_networks by srp33 on 2008-05-29 18:24:16 as ** along with 1 person helsley
  • Learning Bayesian networks: The combination of knowledge and statistical data
    Machine Learning, Vol. 20, No. 3. (1995), pp. 197-243.
    by David Heckerman, Dan Geiger, David M Chickering
    posted to prior_knowledge bayesian_networks by srp33 on 2008-05-29 18:21:11 as ** along with 2 people pescar238 helsley
  • Mining Frequent Patterns without Candidate Generation: A Frequent-Pattern Tree Approach
    Data Min. Knowl. Discov., Vol. 8, No. 1. (January 2004), pp. 53-87.
    by Jiawei Han, Jian Pei, Yiwen Yin, Runying Mao
    posted to association_rule_mining by srp33 on 2008-05-29 16:18:07 as ** along with 3 people and 2 groups duckysherwood feasel whym unc_cs_eve UNC-FPM
  • Identification of Key Processes Underlying Cancer Phenotypes Using Biologic Pathway Analysis
    posted to pathway_analysis data_aggregation by srp33 on 2008-05-28 17:47:58 as **
  • Computational prediction of cancer-gene function
    Nature Reviews Cancer, Vol. 7, No. 1. (14 December 2006), pp. 23-34.
    by Pingzhao Hu, Gary Bader, Dennis A Wigle, Andrew Emili
    posted to function_prediction data_aggregation by srp33 on 2008-05-28 17:36:12 as ** along with 6 people and 1 group jyuh jfr ealloza emb51 Garamonfok cerami BioinfoCIPF
  • Comparative analysis of algorithms for identifying amplifications and deletions in array CGH data
    Bioinformatics, Vol. 21, No. 19. (1 October 2005), pp. 3763-3770.
    by Weil R Lai, Mark D Johnson, Raju Kucherlapati, Peter J Park
    posted to acgh_tools by srp33 on 2008-05-28 17:26:36 as ** along with 2 people shigepong debasis
  • PLoS ONE: ADaCGH: A Parallelized Web-Based Application and R Package for the Analysis of aCGH Data
    posted to acgh_tools by srp33 on 2008-05-28 17:25:33 as **
  • A Systems Approach to Model Metastatic Progression
    Cancer Res, Vol. 66, No. 11. (1 June 2006), pp. 5537-5539.
    by Barry S Taylor, Sooryanarayana Varambally, Arul M Chinnaiyan
    posted to data_aggregation by srp33 on 2008-05-28 17:19:28 as **
  • From bytes to bedside: data integration and computational biology for translational cancer research.
    PLoS Comput Biol, Vol. 3, No. 2. (23 February 2007)
    by JP Mathew, BS Taylor, GD Bader, S Pyarajan, M Antoniotti, AM Chinnaiyan, C Sander, SJ Burakoff, B Mishra
    posted to translational_research data_aggregation by srp33 on 2008-05-28 17:07:11 as ** along with 4 people oelemento frohike jfr kynn
  • Peeling off the hidden genetic heterogeneities of cancers based on disease-relevant functional modules.
    Molecular medicine (Cambridge, Mass.), Vol. 12, No. 1-3. (r 2006), pp. 25-33.
    by JZ Xu, Z Guo, M Zhang, X Li, YJ Li, SQ Rao
    posted to gene_sets by srp33 on 2008-05-28 17:04:16 as **
  • Random-set methods identify distinct aspects of the enrichment signal in gene-set analysis
    posted to microarray gene_sets by srp33 on 2008-05-28 16:58:55 as **
  • IDconverter and IDClight: Conversion and annotation of gene and protein IDs
    BMC Bioinformatics, Vol. 8, No. 1. (2007)
    by Andreu Alibes, Patricio Yankilevich, Andres Canada, Ramon D Uriarte
    posted to data_aggregation by srp33 on 2008-05-28 16:54:19 as ** along with 6 people and 1 group mdstobbe cerami jyuh aalibes jfr grahamc ParkinsonLab_at_MaRS
  • Efficient knowledge discovery through the integration of heterogeneous data
    Information and Software Technology, Vol. 41, No. 9. (25 June 1999), pp. 569-578.
    by B Scotney, S Mcclean
    posted to data_aggregation by srp33 on 2008-05-27 17:55:42 as **
  • Putting microarrays in a context: Integrated analysis of diverse biological data
    Brief Bioinform, Vol. 6, No. 1. (1 January 2005), pp. 34-43.
    by Olga G Troyanskaya
    posted to microarray data_aggregation by srp33 on 2008-05-27 17:53:42 as **
  • Learning Classifiers from Semantically Heterogeneous Data
    On the Move to Meaningful Internet Systems 2004: CoopIS, DOA, and ODBASE (2004), pp. 963-980.
    by Doina Caragea, Jyotishman Pathak, Vasant G Honavar
    posted to data_aggregation classification by srp33 on 2008-05-27 17:52:22 as **
  • A Bayesian framework for combining heterogeneous data sources for gene function prediction (in Saccharomyces cerevisiae).
    Proc Natl Acad Sci U S A, Vol. 100, No. 14. (8 July 2003), pp. 8348-8353.
    by OG Troyanskaya, K Dolinski, AB Owen, RB Altman, D Botstein
    posted to data_aggregation bayesian_networks by srp33 on 2008-05-27 17:42:13 as ** along with 17 people and 2 groups frohike kallberg carlk isimpson BioGeek serak dragonrez okarsligil lfriedl balajis eckart_bindewald eweaver luispedro opheliav wnpx nedwards Evangelia kdl Bioinformatics
  • Feature selection based on bootstrapping
    Computational Intelligence Methods and Applications, 2005 ICSC Congress on (2005), 6 pp..
    by N Diaz-Diaz, JS Aguilar-Ruiz, JA Nepomuceno, J Garcia
    posted to feature_selection by srp33 on 2008-05-23 20:52:39 as **
  • Support vector machine classification and validation of cancer tissue samples using microarray expression data.
    Bioinformatics, Vol. 16, No. 10. (October 2000), pp. 906-914.
    by TS Furey, N Cristianini, N Duffy, DW Bednarski, M Schummer, D Haussler
    posted to support_vector_machines microarray feature_selection classification by srp33 on 2008-05-22 17:04:18 as ** along with 3 people pliz ggrot tvjagan
  • BNArray: an R package for constructing gene regulatory networks from microarray data by using Bayesian network
    Bioinformatics, Vol. 22, No. 23. (1 December 2006), pp. 2952-2954.
    by Chen, Xiaohui, Chen, Ming, Ning, Kaida
    posted to pathway_analysis microarray bayesian_networks by srp33 on 2008-05-22 15:51:27 as ** along with 1 person jhatrimatri
  • Statistical issues in the analysis of Illumina data
    BMC Bioinformatics, Vol. 9, No. 1. (2008)
    by Mark Dunning, Nuno B Morais, Andy Lynch, Simon Tavare, Matthew Ritchie
    posted to raw_data_analysis illumina by srp33 on 2008-05-22 02:50:44 as ** along with 4 people and 1 group stajich neveaire RockHI thomaskelder Berkeley Mycology
  • Gene Expression-based Classification of Malignant Gliomas Correlates Better with Survival than Histological Classification
    Cancer Res, Vol. 63, No. 7. (1 April 2003), pp. 1602-1607.
    by Catherine L Nutt, DR Mani, Rebecca A Betensky, Pablo Tamayo, Gregory J Cairncross, Christine Ladd, Ute Pohl, Christian Hartmann, Margaret E Mclaughlin, Tracy T Batchelor, Peter M Black, Andreas von Deimling, Scott L Pomeroy, Todd R Golub, David N Louis
    posted to microarray classification brain_cancer by srp33 on 2008-05-21 21:14:00 as **
  • Algorithms for Large Scale Markov Blanket Discovery
    (2003)
    by I Tsamardinos, C Aliferis, A Statnikov
    posted to markov_blanket by srp33 on 2008-05-21 21:04:17 as **
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