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srp33 microarray [37 articles]

Recent papers added to srp33 library classified by the tag microarray. You can also see everyone's microarray.
  • An oncogenic KRAS2 expression signature identified by cross-species gene-expression analysis
    Nature Genetics, Vol. 37, No. 1. (19 December 2004), 48.
    by Alejandro Sweet-Cordero, Sayan Mukherjee, Aravind Subramanian, Han You, Jeffrey J Roix, Christine Ladd-Acosta, Jill Mesirov, Todd R Golub, Tyler Jacks
    posted to somatic_mutations microarray gene_sets by srp33 on 2008-07-21 23:33:16 as ** along with 2 people and 1 group jfr ealloza BioinfoCIPF
  • A comparative study of feature selection and multiclass classification methods for tissue classification based on gene expression.
    Bioinformatics, Vol. 20, No. 15. (12 October 2004), pp. 2429-2437.
    by T Li, C Zhang, M Ogihara
    posted to microarray feature_selection by srp33 on 2008-06-30 17:51:44 as ** along with 2 people ujh chiahuey
  • A molecular signature of metastasis in primary solid tumors
    Nat Genet, Vol. 33, No. 1. (January 2003), pp. 49-54.
    by Sridhar Ramaswamy, Ken N Ross, Eric S Lander, Todd R Golub
    posted to microarray hierarchical_clustering feature_selection by srp33 on 2008-06-30 16:40:22 as **
  • Integrating genetic and gene expression data: application to cardiovascular and metabolic traits in mice.
    Mamm Genome, Vol. 17, No. 6. (June 2006), pp. 466-479.
    by TA Drake, EE Schadt, AJ Lusis
    posted to microarray data_aggregation by srp33 on 2008-05-30 20:22:46 as ** along with 2 people koller jo_davies
  • Using Bayesian networks to analyze expression data.
    J Comput Biol, Vol. 7, No. 3-4. (2000), pp. 601-620.
    by N Friedman, M Linial, I Nachman, D Pe'er
    posted to microarray bayesian_networks by srp33 on 2008-05-30 19:56:15 as ** along with 7 people brl ldfu dragonrez Schmidtc wnpx helsley heliopais
  • Gene expression profiling identifies molecular subtypes of gliomas.
    Oncogene, Vol. 22, No. 31. (31 July 2003), pp. 4918-4923.
    by R Shai, T Shi, TJ Kremen, S Horvath, LM Liau, TF Cloughesy, PS Mischel, SF Nelson
    posted to microarray clustering classification brain_cancer by srp33 on 2008-05-29 22:28:33 as ** along with 1 person and 1 group jeremymiller GeschwindLab
  • Random-set methods identify distinct aspects of the enrichment signal in gene-set analysis
    posted to microarray gene_sets by srp33 on 2008-05-28 16:58:55 as **
  • Putting microarrays in a context: Integrated analysis of diverse biological data
    Brief Bioinform, Vol. 6, No. 1. (1 January 2005), pp. 34-43.
    by Olga G Troyanskaya
    posted to microarray data_aggregation by srp33 on 2008-05-27 17:53:42 as **
  • Support vector machine classification and validation of cancer tissue samples using microarray expression data.
    Bioinformatics, Vol. 16, No. 10. (October 2000), pp. 906-914.
    by TS Furey, N Cristianini, N Duffy, DW Bednarski, M Schummer, D Haussler
    posted to support_vector_machines microarray feature_selection classification by srp33 on 2008-05-22 17:04:18 as ** along with 3 people pliz ggrot tvjagan
  • BNArray: an R package for constructing gene regulatory networks from microarray data by using Bayesian network
    Bioinformatics, Vol. 22, No. 23. (1 December 2006), pp. 2952-2954.
    by Chen, Xiaohui, Chen, Ming, Ning, Kaida
    posted to pathway_analysis microarray bayesian_networks by srp33 on 2008-05-22 15:51:27 as ** along with 1 person jhatrimatri
  • Gene Expression-based Classification of Malignant Gliomas Correlates Better with Survival than Histological Classification
    Cancer Res, Vol. 63, No. 7. (1 April 2003), pp. 1602-1607.
    by Catherine L Nutt, DR Mani, Rebecca A Betensky, Pablo Tamayo, Gregory J Cairncross, Christine Ladd, Ute Pohl, Christian Hartmann, Margaret E Mclaughlin, Tracy T Batchelor, Peter M Black, Andreas von Deimling, Scott L Pomeroy, Todd R Golub, David N Louis
    posted to microarray classification brain_cancer by srp33 on 2008-05-21 21:14:00 as **
  • Knowledge-based analysis of microarray gene expression data by using support vector machines
    PNAS, Vol. 97, No. 1. (4 January 2000), pp. 262-267.
    by Michael P Brown, William N Grundy, David Lin, Nello Cristianini, Charles W Sugnet, Terrence S Furey, Manuel Ares, David Haussler
    posted to support_vector_machines microarray by srp33 on 2008-05-21 20:41:14 as ** along with 2 people and 4 groups neveaire dps Biostatistics Computational-Genomics Bioinformatics Neuroscience
  • Support vector machine classification of microarray data
    (1999)
    by S Mukherjee, P Tamayo, D Slonim, A Verri, T Golub, J Mesirov, T Poggio
    posted to support_vector_machines microarray classification by srp33 on 2008-05-21 20:15:19 as ** along with 1 person pliz
  • Recursive Cluster Elimination (RCE) for Classification and Feature Selection from Gene Expression Data
    BMC Bioinformatics, Vol. 8 (02 May 2007), 144.
    by Malik Yousef, Segun Jung, Louise C Showe, Michael K Showe
    posted to microarray feature_selection classification by srp33 on 2008-05-21 19:46:24 as ** along with 3 people jyuh jfr rdiaz
  • Predicting the prognosis of breast cancer by integrating clinical and microarray data with Bayesian networks.
    Bioinformatics, Vol. 22, No. 14. (15 July 2006)
    by O Gevaert, FD Smet, D Timmerman, Y Moreau, BD Moor
    posted to microarray bayesian_networks by srp33 on 2008-05-21 19:40:31 as ** along with 5 people jfr wnpx frohike welchr macavity1g
  • Strong-association-rule mining for large-scale gene-expression data analysis: a case study on human SAGE data.
    Genome Biol, Vol. 3, No. 12. (2002)
    by C Becquet, S Blachon, B Jeudy, JF Boulicaut, O Gandrillon
    posted to microarray association_rule_mining by srp33 on 2008-05-17 16:12:27 as ** along with 1 person ujh
  • From patterns to pathways: gene expression data analysis comes of age.
    Nat Genet, Vol. 32 Suppl (December 2002), pp. 502-508.
    by DK Slonim
    posted to pathway_analysis microarray by srp33 on 2008-05-17 16:08:33 as ** along with 4 people klo roys textoris incovoma
  • Higher order structure in the cancer transcriptome and systems medicine
    Mol Syst Biol, Vol. 3 (13 March 2007)
    by Edison T Liu, Thomas Lemberger
    posted to microarray meta-analysis by srp33 on 2008-05-14 21:27:47 as **
  • DNA microarrays in drug discovery and development.
    Nat Genet, Vol. 21, No. 1 Suppl. (January 1999), pp. 48-50.
    by C Debouck, PN Goodfellow
    posted to microarray drug_discovery by srp33 on 2008-05-14 21:12:06 as ** along with 1 person leelarcombe
  • From signatures to models: understanding cancer using microarrays.
    Nat Genet, Vol. 37 Suppl (June 2005)
    by E Segal, N Friedman, N Kaminski, A Regev, D Koller
    posted to pathway_analysis microarray meta-analysis by srp33 on 2008-05-14 21:02:36 as ** along with 8 people and 1 group aalibes textoris troels_marstrand wnpx nirfriedman rdiaz sampath shikin GeneGo
  • Large-scale meta-analysis of cancer microarray data identifies common transcriptional profiles of neoplastic transformation and progression
    PNAS, Vol. 101, No. 25. (22 June 2004), pp. 9309-9314.
    by Daniel R Rhodes, Jianjun Yu, K Shanker, Nandan Deshpande, Radhika Varambally, Debashis Ghosh, Terrence Barrette, Akhilesh Pandey, Arul M Chinnaiyan
    posted to pathway_analysis microarray meta-analysis by srp33 on 2008-05-14 20:37:35 as ** along with 2 people and 1 group hawkeyehammer ugengma Indigene
  • Meta-Analysis of Microarrays: Interstudy Validation of Gene Expression Profiles Reveals Pathway Dysregulation in Prostate Cancer
    Cancer Res, Vol. 62, No. 15. (1 August 2002), pp. 4427-4433.
    by Daniel R Rhodes, Terrence R Barrette, Mark A Rubin, Debashis Ghosh, Arul M Chinnaiyan
    posted to pathway_analysis microarray meta-analysis by srp33 on 2008-05-14 20:34:37 as ** along with 4 people and 1 group kengg hawkeyehammer ugengma waghsk Indigene
  • Sorting Out Breast-Cancer Gene Signatures
    N Engl J Med, Vol. 356, No. 3. (18 January 2007), pp. 294-297.
    by Joan Massague
    posted to microarray classification by srp33 on 2008-05-14 04:30:33 as ** along with 1 person jfr
  • From the Cover: Gene set enrichment analysis: A knowledge-based approach for interpreting genome-wide expression profiles
    PNAS, Vol. 102, No. 43. (25 October 2005), pp. 15545-15550.
    by Aravind Subramanian, Pablo Tamayo, Vamsi K Mootha, Sayan Mukherjee, Benjamin L Ebert, Michael A Gillette, Amanda Paulovich, Scott L Pomeroy, Todd R Golub, Eric S Lander, Jill P Mesirov
    posted to pathway_analysis microarray gene_sets by srp33 on 2008-05-14 04:29:25 as ** along with 20 people and 4 groups ellakat ihpark dragonrez jfr balajis maryee xwbcn hpiwowar aviad_work ealloza jdiggans jeremymiller frohike hawkeyehammer schuylrp natstreet heliopais shikin waghsk roys Bioinformatics BioinfoCIPF GeschwindLab Indigene
  • Linking oncogenic pathways with therapeutic opportunities
    Nature Reviews Cancer, Vol. 6, No. 9. (17 August 2006), pp. 735-741.
    by Andrea H Bild, Anil Potti, Joseph R Nevins
    posted to pathway_analysis microarray by srp33 on 2008-05-14 04:25:32 as ** along with 4 people jfr aviad_work jackjackjjj frohike
  • Oncogenic pathway signatures in human cancers as a guide to targeted therapies
    Nature (06 November 2005)
    by Andrea H Bild, Guang Yao, Jeffrey T Chang, Quanli Wang, Anil Potti, Dawn Chasse, Mary-Beth Joshi, David Harpole, Johnathan M Lancaster, Andrew Berchuck, John A Olson, Jeffrey R Marks, Holly K Dressman, Mike West, Joseph R Nevins
    posted to pathway_analysis microarray by srp33 on 2008-05-14 04:24:32 as ** along with 11 people Yanno jyuh kentsis mfenner ajeffs tuck maryee eckart_bindewald frohike Ao_Li2007 waghsk
  • Exon arrays provide accurate assessments of gene expression
    Genome Biology, Vol. 8 (15 May 2007), R82.
    by Karen Kapur, Yi Xing, Zhengqing Ouyang, Wing H Wong
    posted to microarray data_normalization by srp33 on 2008-05-14 04:20:35 as ** along with 3 people bertelsen jfr nicholso
  • Molecular classification of cancer: class discovery and class prediction by gene expression monitoring.
    Science, Vol. 286, No. 5439. (15 October 1999), pp. 531-537.
    by TR Golub, DK Slonim, P Tamayo, C Huard, M Gaasenbeek, JP Mesirov, H Coller, ML Loh, JR Downing, MA Caligiuri, CD Bloomfield, ES Lander
    posted to microarray feature_selection classification by srp33 on 2008-05-14 04:18:50 as ** along with 1 person ggrot
  • Analysis of recursive gene selection approaches from microarray data
    Bioinformatics, Vol. 21, No. 19. (1 October 2005), pp. 3741-3747.
    by Fan Li, Yiming Yang
    posted to microarray feature_selection by srp33 on 2008-05-12 21:53:04 as **
  • Summaries of Affymetrix GeneChip probe level data.
    Nucleic Acids Res, Vol. 31, No. 4. (15 February 2003)
    by RA Irizarry, BM Bolstad, F Collin, LM Cope, B Hobbs, TP Speed
    posted to microarray data_normalization by srp33 on 2008-05-12 21:32:08 as ** along with 11 people bertelsen pcahan1 RMGraze aviad_work vplagnol ghattem talponer heliopais wirawan waszak rschulz
  • Application of a priori established gene sets to discover biologically important differential expression in microarray data
    PNAS, Vol. 102, No. 43. (25 October 2005), pp. 15278-15279.
    by Andrea Bild, Phillip G Febbo
    posted to microarray gene_sets by srp33 on 2008-05-08 22:47:39 as ** along with 3 people and 1 group maryee ealloza jdiggans BioinfoCIPF
  • Analysis of sample set enrichment scores: assaying the enrichment of sets of genes for individual samples in genome-wide expression profiles.
    Bioinformatics, Vol. 22, No. 14. (15 July 2006)
    by E Edelman, A Porrello, J Guinney, B Balakumaran, A Bild, PG Febbo, S Mukherjee
    posted to microarray gene_sets by srp33 on 2008-04-28 15:23:04 as ** along with 5 people and 1 group dragonrez jfr frohike heliopais barriot Bioinformatics
  • Discovering statistically significant pathways in expression profiling studies.
    Proc Natl Acad Sci U S A, Vol. 102, No. 38. (20 September 2005), pp. 13544-13549.
    by L Tian, SA Greenberg, SW Kong, J Altschuler, IS Kohane, PJ Park
    posted to pathway_analysis microarray gene_sets by srp33 on 2008-04-28 15:19:41 as ** along with 7 people and 1 group giovenko heliopais dragonrez maryee ealloza frohike justescaped BioinfoCIPF
  • Alternative splicing and differential gene expression in colon cancer detected by a whole genome exon array
    BMC Genomics, Vol. 7 (27 December 2006), 325.
    by Paul J Gardina, Tyson A Clark, Brian Shimada, Michelle K Staples, Qing Yang, James Veitch, Anthony Schweitzer, Tarif Awad, Charles Sugnet, Suzanne Dee, Christopher Davies, Alan Williams, Yaron Turpaz
    posted to microarray data_normalization alternative_splicing by srp33 on 2008-04-25 18:00:38 as ** along with 2 people jfr waszak
  • A gene sets approach for identifying prognostic gene signatures for outcome prediction
    BMC Genomics, Vol. 9, No. 1. (2008)
    by Seon Y Kim, Yong S Kim
    posted to prognosis microarray gene_sets by srp33 on 2008-04-24 22:50:59 as ** along with 2 people ptrobajo barriot
  • Testing association of a pathway with survival using gene expression data
    Bioinformatics, Vol. 21, No. 9. (1 May 2005), pp. 1950-1957.
    by Jelle J Goeman, Jan Oosting, Anne-Marie Cleton-Jansen, Jakob K Anninga, Hans C van Houwelingen
    posted to pathway_analysis microarray gene_sets by srp33 on 2008-04-24 22:34:57 as **
  • Breast cancer classification and prognosis based on gene expression profiles from a population-based study
    Proceedings of the National Academy of Sciences, Vol. 100, No. 18. (2 September 2003), pp. 10393-10398.
    by Christos Sotiriou, Soek-Ying Neo, Lisa M Mcshane, Edward L Korn, Philip M Long, Amir Jazaeri, Philippe Martiat, Steve B Fox, Adrian L Harris, Edison T Liu
    posted to prognosis microarray classification by srp33 on 2008-04-24 22:29:30 as **
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