stajich Huang [10 articles]

Recent papers posted to stajich library by the author Huang. You can also see Huang everyone.

Stage-specific gene expression during urediniospore germination in Puccinia striiformis f. sp tritici

BMC Genomics, Vol. 9 (01 May 2008), 203.

by Yonghong Zhang, Zhipeng Qu, Wenming Zheng, Bo Liu, Xiaojie Wang, Xiaodan Xue, Liangsheng Xu, Lili Huang, Qingmei Han, Jie Zhao, Zhensheng Kang

posted to development gene_expression puccinia rust sexual_development by stajich on 2008-07-07 03:35:47 as

along with 1 group Berkeley Mycology

MicroRNA regulation of messenger-like noncoding RNAs: a network of mutual microRNA control

Trends in Genetics, Vol. In Press, Corrected Proof

by Yi Zhao, Shunmin He, Changning Liu, Songwei Ru, Haitao Zhao, Zhen Yang, Pengcheng Yang, Xiongyin Yuan, Shiwei Sun, Dongbo Bu, Jiefu Huang, Geir Skogerbø, Runsheng Chen

posted to gene_expression metazoan mirna noncoding_rna regulation regulatory_evolution by stajich on 2008-06-22 20:12:10 as

along with 5 people and 2 groups biozy bertelsen maralena imtechnology heliopais microRNA Berkeley Mycology

Evidence against the energetic cost hypothesis for the short introns in highly expressed genes

BMC Evolutionary Biology, Vol. 8 (20 May 2008), 154.

by Yi-Fei Huang, Deng-Ke Niu

posted to intron intron_evolution molecular_evolution by stajich on 2008-05-27 16:19:13 as

along with 1 person and 2 groups cisevol Berkeley Mycology BergmanLab

Intergeneric transfer of ribosomal genes between two fungi

BMC Evolutionary Biology, Vol. 8 (18 March 2008), 87.

by Jiatao Xie, Yanping Fu, Daohong Jiang, Guoqing Li, Junbin Huang, Bo Li, Tom Hsiang, Youliang Peng

posted to fungi horizontal_gene_transfer ribosomal by stajich on 2008-03-25 04:24:41 as

along with 1 group Berkeley Mycology

Genome sequence of the Brown Norway rat yields insights into mammalian evolution.

Nature, Vol. 428, No. 6982. (1 April 2004), pp. 493-521.

by RA Gibbs, GM Weinstock, ML Metzker, DM Muzny, EJ Sodergren, S Scherer, G Scott, D Steffen, KC Worley, PE Burch, G Okwuonu, S Hines, L Lewis, C DeRamo, O Delgado, S Dugan-Rocha, G Miner, M Morgan, A Hawes, R Gill, Celera, RA Holt, MD Adams, PG Amanatides, H Baden-Tillson, M Barnstead, S Chin, CA Evans, S Ferriera, C Fosler, A Glodek, Z Gu, D Jennings, CL Kraft, T Nguyen, CM Pfannkoch, C Sitter, GG Sutton, JC Venter, T Woodage, D Smith, HM Lee, E Gustafson, P Cahill, A Kana, L Doucette-Stamm, K Weinstock, K Fechtel, RB Weiss, DM Dunn, ED Green, RW Blakesley, GG Bouffard, PJ De Jong, K Osoegawa, B Zhu, M Marra, J Schein, I Bosdet, C Fjell, S Jones, M Krzywinski, C Mathewson, A Siddiqui, N Wye, J McPherson, S Zhao, CM Fraser, J Shetty, S Shatsman, K Geer, Y Chen, S Abramzon, WC Nierman, PH Havlak, R Chen, KJ Durbin, A Egan, Y Ren, XZ Song, B Li, Y Liu, X Qin, S Cawley, KC Worley, AJ Cooney, LM D'Souza, K Martin, JQ Wu, ML Gonzalez-Garay, AR Jackson, KJ Kalafus, MP McLeod, A Milosavljevic, D Virk, A Volkov, DA Wheeler, Z Zhang, JA Bailey, EE Eichler, E Tuzun, E Birney, E Mongin, A Ureta-Vidal, C Woodwark, E Zdobnov, P Bork, M Suyama, D Torrents, M Alexandersson, BJ Trask, JM Young, H Huang, H Wang, H Xing, S Daniels, D Gietzen, J Schmidt, K Stevens, U Vitt, J Wingrove, F Camara, M Mar Albà, JF Abril, R Guigo, A Smit, I Dubchak, EM Rubin, O Couronne, A Poliakov, N Hübner, D Ganten, C Goesele, O Hummel, T Kreitler, YA Lee, J Monti, H Schulz, H Zimdahl, H Himmelbauer, H Lehrach, HJ Jacob, S Bromberg, J Gullings-Handley, MI Jensen-Seaman, AE Kwitek, J Lazar, D Pasko, PJ Tonellato, S Twigger, CP Ponting, JM Duarte, S Rice, L Goodstadt, SA Beatson, RD Emes, EE Winter, C Webber, P Brandt, G Nyakatura, M Adetobi, F Chiaromonte, L Elnitski, P Eswara, RC Hardison, M Hou, D Kolbe, K Makova, W Miller, A Nekrutenko, C Riemer, S Schwartz, J Taylor, S Yang, Y Zhang, K Lindpaintner, TD Andrews, M Caccamo, M Clamp, L Clarke, V Curwen, R Durbin, E Eyras, SM Searle, GM Cooper, S Batzoglou, M Brudno, A Sidow, EA Stone, JC Venter, BA Payseur, G Bourque, C López-Otín, XS Puente, K Chakrabarti, S Chatterji, C Dewey, L Pachter, N Bray, VB Yap, A Caspi, G Tesler, PA Pevzner, D Haussler, KM Roskin, R Baertsch, H Clawson, TS Furey, AS Hinrichs, D Karolchik, WJ Kent, KR Rosenbloom, H Trumbower, M Weirauch, DN Cooper, PD Stenson, B Ma, M Brent, M Arumugam, D Shteynberg, RR Copley, MS Taylor, H Riethman, U Mudunuri, J Peterson, M Guyer, A Felsenfeld, S Old, S Mockrin, F Collins,

posted to comparative_genomics genome_paper rat by stajich on 2007-12-16 01:02:12 as

along with 6 people and 4 groups gjuggler aprasad ccots rvosa dchughes djkt FAB-lab G4ID Genetics-of-Gambling Berkeley Mycology

Evolutionary and Biomedical Insights from the Rhesus Macaque Genome

Science, Vol. 316, No. 5822. (13 April 2007), pp. 222-234.

by Rhesus, Richard A Gibbs, Jeffrey Rogers, Michael G Katze, Roger Bumgarner, George M Weinstock, Elaine R Mardis, Karin A Remington, Robert L Strausberg, Craig J Venter, Richard K Wilson, Mark A Batzer, Carlos D Bustamante, Evan E Eichler, Matthew W Hahn, Ross C Hardison, Kateryna D Makova, Webb Miller, Aleksandar Milosavljevic, Robert E Palermo, Adam Siepel, James M Sikela, Tony Attaway, Stephanie Bell, Kelly E Bernard, Christian J Buhay, Mimi N Chandrabose, Marvin Dao, Clay Davis, Kimberly D Delehaunty, Yan Ding, Huyen H Dinh, Shannon Dugan-Rocha, Lucinda A Fulton, Ramatu A Gabisi, Toni T Garner, Jennifer Godfrey, Alicia C Hawes, Judith Hernandez, Sandra Hines, Michael Holder, Jennifer Hume, Shalini N Jhangiani, Vandita Joshi, Ziad M Khan, Ewen F Kirkness, Andrew Cree, Gerald R Fowler, Sandra Lee, Lora R Lewis, Zhangwan Li, Yih-Shin Liu, Stephanie M Moore, Donna Muzny, Lynne V Nazareth, Dinh N Ngo, Geoffrey O Okwuonu, Grace Pai, David Parker, Heidie A Paul, Cynthia Pfannkoch, Craig S Pohl, Yu-Hui Rogers, San J Ruiz, Aniko Sabo, Jireh Santibanez, Brian W Schneider, Scott M Smith, Erica Sodergren, Amanda F Svatek, Teresa R Utterback, Selina Vattathil, Wesley Warren, Courtney S White, Asif T Chinwalla, Yucheng Feng, Aaron L Halpern, Ladeana W Hillier, Xiaoqiu Huang, Pat Minx, Joanne O Nelson, Kymberlie H Pepin, Xiang Qin, Granger G Sutton, Eli Venter, Brian P Walenz, John W Wallis, Kim C Worley, Shiaw-Pyng Yang, Steven M Jones, Marco A Marra, Mariano Rocchi, Jacqueline E Schein, Robert Baertsch, Laura Clarke, Miklos Csuros, Jarret Glasscock, Alan R Harris, Paul Havlak, Andrew R Jackson, Huaiyang Jiang, Yue Liu, David N Messina, Yufeng Shen, Henry X Song, Todd Wylie, Lan Zhang, Ewan Birney, Kyudong Han, Miriam K Konkel, Jungnam Lee, Arian F Smit, Brygg Ullmer, Hui Wang, Jinchuan Xing, Richard Burhans, Ze Cheng, John E Karro, Jian Ma, Brian Raney, Xinwei She, Michael J Cox, Jeffery P Demuth, Laura J Dumas, Sang-Gook Han, Janet Hopkins, Anis Karimpour-Fard, Young H Kim, Jonathan R Pollack, Tomas Vinar, Charles Addo-Quaye, Jeremiah Degenhardt, Alexandra Denby, Melissa J Hubisz, Amit Indap, Carolin Kosiol, Bruce T Lahn, Heather A Lawson, Alison Marklein, Rasmus Nielsen, Eric J Vallender, Andrew G Clark, Betsy Ferguson, Ryan D Hernandez, Kashif Hirani, Hildegard Kehrer-Sawatzki, Jessica Kolb, Shobha Patil, Ling-Ling Pu, Yanru Ren, David G Smith, David A Wheeler, Ian Schenck, Edward V Ball, Rui Chen, David N Cooper, Belinda Giardine, Fan Hsu, James W Kent, Arthur Lesk, David L Nelson, William E O'Brien, Kay Prufer, Peter D Stenson, James C Wallace, Hui Ke, Xiao-Ming Liu, Peng Wang, Andy P Xiang, Fan Yang, Galt P Barber, David Haussler, Donna Karolchik, Andy D Kern, Robert M Kuhn, Kayla E Smith, Ann S Zwieg

posted to genome_paper macaque primate by stajich on 2007-12-16 01:01:33 as

along with 4 people and 4 groups dchughes djkt hpaces Garamonfok Bioinformatics G4ID Genetics-of-Gambling Berkeley Mycology

Phylogenetic Simulation of Promoter Evolution: Estimation and Modeling of Binding Site Turnover Events and Assessing Their Impact on Alignment Tools

Genome Biology, Vol. 8 (24 October 2007), R225.

by Weichun Huang, Joseph R Nevins, Uwe Ohler

posted to binding_site promotor turnover by stajich on 2007-10-29 01:04:01 as

along with 4 people and 2 groups dpollard djkt Garamonfok maximilianh EisenLab cis-regulatory-evolution

The Genome of the Basidiomycetous Yeast and Human Pathogen Cryptococcus neoformans

Science, Vol. 307, No. 5713. (25 February 2005), pp. 1321-1324.

by Brendan J Loftus, Eula Fung, Paola Roncaglia, Don Rowley, Paolo Amedeo, Dan Bruno, Jessica Vamathevan, Molly Miranda, Iain J Anderson, James A Fraser, Jonathan E Allen, Ian E Bosdet, Michael R Brent, Readman Chiu, Tamara L Doering, Maureen J Donlin, Cletus A D'Souza, Deborah S Fox, Viktoriya Grinberg, Jianmin Fu, Marilyn Fukushima, Brian J Haas, James C Huang, Guilhem Janbon, Steven J Jones, Hean L Koo, Martin I Krzywinski, June K Kwon-Chung, Klaus B Lengeler, Rama Maiti, Marco A Marra, Robert E Marra, Carrie A Mathewson, Thomas G Mitchell, Mihaela Pertea, Florenta R Riggs, Steven L Salzberg, Jacqueline E Schein, Alla Shvartsbeyn, Heesun Shin, Martin Shumway, Charles A Specht, Bernard B Suh, Aaron Tenney, Terry R Utterback, Brian L Wickes, Jennifer R Wortman, Natasja H Wye, James W Kronstad, Jennifer K Lodge, Joseph Heitman, Ronald W Davis, Claire M Fraser, Richard W Hyman

posted to cryptococcus fungi genome genome_paper by stajich on 2007-05-22 06:17:32 as

along with 5 people and 3 groups labedan Cortel jwortman dalloliogm alexl Web2 splicing yeast

Chromosomal translocation and segmental duplication in Cryptococcus neoformans.

Eukaryot Cell, Vol. 4, No. 2. (February 2005), pp. 401-406.

by JA Fraser, JC Huang, R Pukkila-Worley, JA Alspaugh, TG Mitchell, J Heitman

posted to no-tag by stajich on 2007-01-18 23:07:01 as

along with 1 person jwortman