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tabu library [73 articles]

Статьи, недавно добавленные в библиотеку tabu .
  • Accurate Prediction of BRCA1 and BRCA2 Heterozygous Genotype Using Expression Profiling after Induced DNA Damage.
    Clin Cancer Res, Vol. 12, No. 13. (1 July 2006), pp. 3896-3901.
    by Zsofia Kote-Jarai, Lucy Matthews, Ana Osorio, Susan Shanley, Ian Giddings, Francois Moreews, Imogen Locke, D Gareth G Evans, Diana Eccles, Richard D D Williams, Mark Girolami, Colin Campbell, Ros Eeles
    posted to microarray prediction by tabu on 2006-07-06 00:22:21 as ** along with 1 person jfr
  • SYMMETRIC AND ASYMMETRIC MULTI-MODALITY BICLUSTERING ANALYSIS FOR MICROARRAY DATA MATRIX.
    J Bioinform Comput Biol, Vol. 4, No. 2. (April 2006), pp. 275-298.
    by Sun-Yuan Y Kung, Man-Wai W Mak, Ilias Tagkopoulos
    posted to microarray by tabu on 2006-07-06 00:17:45 as **
  • Pathway analysis using random forests classification and regression.
    Bioinformatics (29 June 2006)
    by Herbert Pang, Aiping Lin, Matthew Holford, Bradley E E Enerson, Bin Lu, Michael P P Lawton, Eugenia Floyd, Hongyu Zhao
  • Gene expression of human T lymphocytes cell cycle: Experimental and bioinformatic analysis.
    J Cell Biochem (22 June 2006)
    by Luca Giacomelli, Claudio Nicolini
    posted to cell-cycle t-cell by tabu on 2006-06-27 10:16:40 as **
  • Gene expression profiles of normal proliferating and differentiating human intestinal epithelial cells: A comparison with the Caco-2 cell model.
    J Cell Biochem (22 June 2006)
    by Eric Tremblay, Joëlle Auclair, Edgar Delvin, Emile Levy, Daniel Ménard, Alexey V V Pshezhetsky, Nathalie Rivard, Ernest G G Seidman, Daniel Sinnett, Pierre H H Vachon, Jean-François F Beaulieu
    posted to differentiation expression proliferation by tabu on 2006-06-27 10:15:19 as **
  • Genome-wide analysis of mammalian promoter architecture and evolution
    Nature Genetics, Vol. 38, No. 6. (28 April 2006), pp. 626-635.
    by Piero Carninci, Albin Sandelin, Boris Lenhard, Shintaro Katayama, Kazuro Shimokawa, Jasmina Ponjavic, Colin AM Semple, Martin S Taylor, Pär G Engström, Martin C Frith, Alistair RR Forrest, Wynand B Alkema, Sin L Tan, Charles Plessy, Rimantas Kodzius, Timothy Ravasi, Takeya Kasukawa, Shiro Fukuda, Mutsumi Kanamori-Katayama, Yayoi Kitazume, Hideya Kawaji, Chikatoshi Kai, Mari Nakamura, Hideaki Konno, Kenji Nakano, Salim Mottagui-Tabar, Peter Arner, Alessandra Chesi, Stefano Gustincich, Francesca Persichetti, Harukazu Suzuki, Sean M Grimmond, Christine A Wells, Valerio Orlando, Claes Wahlestedt, Edison T Liu, Matthias Harbers, Jun Kawai, Vladimir B Bajic, David A Hume, Yoshihide Hayashizaki
  • An ORFeome-based analysis of human transcription factor genes and the construction of a microarray to interrogate their expression.
    Genome Res, Vol. 14, No. 10B. (October 2004), pp. 2041-2047.
    by DN Messina, J Glasscock, W Gish, M Lovett
  • Integrative genomic analyses identify MITF as a lineage survival oncogene amplified in malignant melanoma
    Nature, Vol. 436, No. 7047., pp. 117-122.
    by Levi A Garraway, Hans R Widlund, Mark A Rubin, Gad Getz, Aaron J Berger, Sridhar Ramaswamy, Rameen Beroukhim, Danny A Milner, Scott R Granter, Jinyan Du, Charles Lee, Stephan N Wagner, Cheng Li, Todd R Golub, David L Rimm, Matthew L Meyerson, David E Fisher, William R Sellers
    posted to cancer cgh pathway by tabu on 2006-06-21 01:58:24 as ** along with 4 people kentsis acorner jfr rdiaz
  • Reconstruction of a functional human gene network, with an application for prioritizing positional candidate genes.
    Am J Hum Genet, Vol. 78, No. 6. (June 2006), pp. 1011-1025.
  • Complex Loci in human and mouse genomes.
    PLoS Genet, Vol. 2, No. 4. (April 2006)
    by PG Engström, H Suzuki, N Ninomiya, A Akalin, L Sessa, G Lavorgna, A Brozzi, L Luzi, SL Tan, L Yang, G Kunarso, EL Ng, S Batalov, C Wahlestedt, C Kai, J Kawai, P Carninci, Y Hayashizaki, C Wells, VB Bajic, V Orlando, JF Reid, B Lenhard, L Lipovich
  • Identification and Classification of Conserved RNA Secondary Structures in the Human Genome.
    PLoS Comput Biol, Vol. 2, No. 4. (21 April 2006)
    by Jakob Skou S Pedersen, Gill Bejerano, Adam Siepel, Kate Rosenbloom, Kerstin Lindblad-Toh, Eric S S Lander, Jim Kent, Webb Miller, David Haussler
  • The false discovery rate: a variable selection perspective
    Journal of Statistical Planning and Inference, Vol. 136, No. 8. (1 August 2006), pp. 2668-2684.
    by Debashis Ghosh, Wei Chen, Trivellore Raghunathan
    posted to fdr by tabu on 2006-04-18 17:37:08 as ** along with 1 person Ayest
  • Exploring the conditional coregulation of yeast gene expression through fuzzy k-means clustering.
    Genome Biol, Vol. 3, No. 11. (10 October 2002)
    by AP Gasch, MB Eisen
    posted to conditional fuzzy k-means by tabu on 2006-04-18 06:08:40 as ** along with 2 people tvdbulck tmmurali
  • Expression profiling in primates reveals a rapid evolution of human transcription factors
    Nature, Vol. 440, No. 7081. (March 2006), pp. 242-245.
    by Yoav Gilad, Alicia Oshlack, Gordon K Smyth, Terence P Speed, Kevin P White
  • Module networks: identifying regulatory modules and their condition-specific regulators from gene expression data.
    Nat Genet, Vol. 34, No. 2. (June 2003), pp. 166-176.
  • A loss-of-function RNA interference screen for molecular targets in cancer
    Nature (29 March 2006)
    by Vu N Ngo, Eric R Davis, Laurence Lamy, Xin Yu, Hong Zhao, Georg Lenz, Lloyd T Lam, Sandeep Dave, Liming Yang, John Powell, Louis M Staudt
    posted to cancer rnai by tabu on 2006-04-03 05:13:14 as ** along with 3 people jfr lhonigberg mhucka
  • Natural Selection Drives Extremely Rapid Evolution in Antiviral RNAi Genes.
    Curr Biol, Vol. 16, No. 6. (21 March 2006), pp. 580-585.
    by DJ Obbard, FM Jiggins, DL Halligan, TJ Little
  • Microarray-based survey of CpG islands identifies concurrent hyper- and hypomethylation patterns in tissues derived from patients with breast cancer.
    Genes Chromosomes Cancer (30 March 2006)
    by Arkadiusz Piotrowski, Magdalena Benetkiewicz, Uwe Menzel, Teresita Díaz D de Ståhl, Kiran Mantripragada, Gintautas Grigelionis, Patrick G G Buckley, Michał Jankowski, Jacek Hoffman, Dariusz Bała, Ewa Srutek, Ryszard Laskowski, Wojciech Zegarski, Jan P P Dumanski
    posted to breast cancer cpg methylation by tabu on 2006-04-03 05:11:31 as **
  • Genome-wide survey of imprinted genes.
    Cytogenet Genome Res, Vol. 113, No. 1-4. (2006), pp. 144-152.
    posted to epigenetics inprint by tabu on 2006-04-03 05:10:28 as **
  • Structural variation in the human genome
    Nature Reviews Genetics, Vol. 7, No. 2., pp. 85-97.
    by Lars Feuk, Andrew R Carson, Stephen W Scherer
  • A global map of p53 transcription-factor binding sites in the human genome.
    Cell, Vol. 124, No. 1. (13 January 2006), pp. 207-219.
    by CL Wei, Q Wu, VB Vega, KP Chiu, P Ng, T Zhang, A Shahab, HC Yong, Y Fu, Z Weng, J Liu, XD Zhao, JL Chew, YL Lee, VA Kuznetsov, WK Sung, LD Miller, B Lim, ET Liu, Q Yu, HH Ng, Y Ruan
  • The design of transcription-factor binding sites is affected by combinatorial regulation.
    Genome Biol, Vol. 6, No. 12. (2005)
    by Y Bilu, N Barkai
  • Ancient duplicated conserved noncoding elements in vertebrates: A genomic and functional analysis.
    Genome Res (13 March 2006)
    by Gayle K K McEwen, Adam Woolfe, Debbie Goode, Tanya Vavouri, Heather Callaway, Greg Elgar
  • High resolution analysis of genomic aberrations by metaphase and array comparative genomic hybridization identifies candidate tumour genes in lung cancer cell lines
    Cancer Letters, Vol. In Press, Corrected Proof
    by Hong Zhu, David C Lam, Kam C Han, Vicky P Tin, Wai S Suen, Elaine Wang, Wah K Lam, Wei W Cai, Lap P Chung, Maria P Wong
    posted to cancer cgh by tabu on 2006-03-08 00:22:24 as **
  • Identification of pathways regulating cell size and cell-cycle progression by RNAi
    Nature, Vol. 439, No. 7079., pp. 1009-1013.
    by Mikael Bjã¶rklund, Minna Taipale, Markku Varjosalo, Juha Saharinen, Juhani Lahdenperã¤, Jussi Taipale
  • Cell type and culture condition-dependent alternative splicing in human breast cancer cells revealed by splicing-sensitive microarrays.
    Cancer Res, Vol. 66, No. 4. (15 February 2006), pp. 1990-1999.
    by C Li, M Kato, L Shiue, JE Shively, M Ares, RJ Lin
    posted to breast cancer microarray splicing by tabu on 2006-02-24 00:20:49 as ** along with 1 person jfr
  • The evolution of spliceosomal introns: patterns, puzzles and progress
    Nature Reviews Genetics, Vol. 7, No. 3., pp. 211-221.
    by Scott W Roy, Walter Gilbert
  • Interacting endogenous and exogenous RNAi pathways in Caenorhabditis elegans.
    RNA (17 February 2006)
    by Rosalind C C Lee, Christopher M M Hammell, Victor Ambros
    posted to rnai by tabu on 2006-02-21 16:21:55 as ** along with 1 person tardigrade
  • Uncovering evolutionary patterns of gene expression using microarrays
    Trends in Ecology & Evolution, Vol. 21, No. 1. (January 2006), pp. 29-37.
    by Jose M Ranz, Carlos A Machado
  • Multiplex detection of surface molecules on colorectal cancers.
    Proteomics (16 February 2006)
    by Peter Ellmark, Larissa Belov, Pauline Huang, C Soon S Lee, Michael J J Solomon, Daniel K K Morgan, Richard I I Christopherson
    posted to cancer proteinchip by tabu on 2006-02-21 05:19:32 as ** along with 1 person MDily
  • AlphaB-crystallin is a novel oncoprotein that predicts poor clinical outcome in breast cancer.
    J Clin Invest, Vol. 116, No. 1. (January 2006), pp. 261-270.
    by JV Moyano, JR Evans, F Chen, M Lu, ME Werner, F Yehiely, LK Diaz, D Turbin, G Karaca, E Wiley, TO Nielsen, CM Perou, VL Cryns
    posted to breast cancer microarray prediction by tabu on 2006-02-20 16:03:00 as **
  • Gene Expression Profiling of Localized Esophageal Carcinomas: Association With Pathologic Response to Preoperative Chemoradiation
    J Clin Oncol, Vol. 24, No. 2. (10 January 2006), pp. 259-267.
    by Rajyalakshmi Luthra, Tsung-Teh Wu, Madan G Luthra, Julie Izzo, Enrique Lopez-Alvarez, Li Zhang, Jaime Bailey, Jeffrey H Lee, Robert Bresalier, Asif Rashid, Stephen G Swisher, Jaffer A Ajani
    posted to cancer microarray prediction by tabu on 2006-02-20 16:00:12 as **
  • Transcription-mediated gene fusion in the human genome
    Genome Res., Vol. 16, No. 1. (1 January 2006), pp. 30-36.
    by Pinchas Akiva, Amir Toporik, Sarit Edelheit, Yifat Peretz, Alex Diber, Ronen Shemesh, Amit Novik, Rotem Sorek
  • Genomic fossils as a snapshot of the human transcriptome
    PNAS, Vol. 103, No. 5. (31 January 2006), pp. 1364-1369.
    by Ronen Shemesh, Amit Novik, Sarit Edelheit, Rotem Sorek
  • Chromosome-wide and promoter-specific analyses identify sites of differential DNA methylation in normal and transformed human cells
    Nature Genetics, Vol. 37, No. 8. (10 July 2005), pp. 853-862.
    by Michael Weber, Jonathan J Davies, David Wittig, Edward J Oakeley, Michael Haase, Wan L Lam, Dirk Schübeler
    posted to methylation by tabu on 2006-02-16 07:08:32 as ** along with 4 people oelemento vmsr slevy03 epigenetics
  • Qualitative analysis of gene networks.
    Pac Symp Biocomput (1998), pp. 77-88.
    posted to network by tabu on 2006-02-14 12:15:02 as ** along with 2 people holan wnpx
  • Mapping of conserved RNA secondary structures predicts thousands of functional noncoding RNAs in the human genome
    Nature Biotechnology, Vol. 23, No. 11. (04 November 2005), pp. 1383-1390.
    by Stefan Washietl, Ivo L Hofacker, Melanie Lukasser, Alexander Hüttenhofer, Peter F Stadler
  • Large-scale structure of genomic methylation patterns.
    Genome Res (19 December 2005)
    by Robert A A Rollins, Fatemeh Haghighi, John R R Edwards, Rajdeep Das, Michael Q Q Zhang, Jingyue Ju, Timothy H H Bestor
  • Quantitative microarray profiling provides evidence against widespread coupling of alternative splicing with nonsense-mediated mRNA decay to control gene expression
    Genes Dev., Vol. 20, No. 2. (15 January 2006), pp. 153-158.
    by Qun Pan, Arneet L Saltzman, Yoon K Kim, Christine Misquitta, Ofer Shai, Lynne E Maquat, Brendan J Frey, Benjamin J Blencowe
    posted to microarray splicing by tabu on 2006-02-06 16:55:24 as ** along with 3 people bertelsen eoghanharr ccots
  • Microarray analysis shows that some microRNAs downregulate large numbers of target mRNAs
    Nature, Vol. aop, No. current. (30 January 2005)
    by Lee P Lim, Nelson C Lau, Philip Garrett-Engele, Andrew Grimson, Janell M Schelter, John Castle, David P Bartel, Peter S Linsley, Jason M Johnson
  • RNA interference as a gene-specific approach for molecular medicine.
    Curr Med Chem, Vol. 12, No. 26. (2005), pp. 3143-3161.
    posted to medicine rnai by tabu on 2006-02-06 15:56:19 as ** along with 2 people tardigrade Hosna
  • Assessing computational tools for the discovery of transcription factor binding sites
    Nature Biotechnology, Vol. 23, No. 1. (06 January 2005), pp. 137-144.
    by Martin Tompa, Nan Li, Timothy L Bailey, George M Church, Bart D De Moor, Eleazar Eskin, Alexander V Favorov, Martin C Frith, Yutao Fu, James J Kent, Vsevolod J Makeev, Andrei A Mironov, William S Noble, Giulio Pavesi, Graziano Pesole, Mireille Régnier, Nicolas Simonis, Saurabh Sinha, Gert Thijs, Jacques v van Helden, Mathias Vandenbogaert, Zhiping Weng, Christopher Workman, Chun Ye, Zhou Zhu
  • De novo monosomy 9p24.3-pter and trisomy 17q24.3-qter characterised by microarray comparative genomic hybridisation in a fetus with an increased nuchal translucency.
    Prenat Diagn (31 January 2006)
    by Sophie Brisset, Serdar Kasakyan, Aurore Coulomb C L'herminé, Valérie Mairovitz, Evelyne Gautier, Marie-Cécile C Aubry, Moncef Benkhalifa, Gérard Tachdjian
    posted to cgh by tabu on 2006-02-03 03:00:32 as **
  • STOCHASTICITY IN GENE EXPRESSION: FROM THEORIES TO PHENOTYPES
    Nat Rev Genet, Vol. 6, No. 6. (June 2005), pp. 451-464.
    by Mads K[aelig]rn, Timothy C Elston, William J Blake, James J Collins
    posted to analysis data microarray by tabu on 2006-02-02 06:16:03 as read along with 4 people ccots wnpx balabu timflutre
  • Genome-wide analysis of coordinate expression and evolution of human cis-encoded sense-antisense transcripts.
    Trends Genet, Vol. 21, No. 6. (June 2005), pp. 326-329.
    by J Chen, M Sun, LD Hurst, GG Carmichael, JD Rowley
    posted to expression sense-antisense by tabu on 2006-02-02 03:27:50 as ** along with 1 person aprasad
  • U18666A-mediated apoptosis in cultured murine cortical neurons: Role of caspases, calpains and kinases.
    Cell Signal (27 January 2006)
    by Chor Hui Vivien H Koh, Robert Z Z Qi, Dianbo Qu, Alirio Melendez, Jayapal Manikandan, Boon Huat H Bay, Wei Duan, Nam Sang S Cheung
    posted to apoptosis caspase microarray by tabu on 2006-02-02 00:50:00 as **
  • DNA damage-induced expression of p53 suppresses mitotic checkpoint kinase hMps1: the lack of this suppression in p53mut cells contributes to apoptosis.
    J Biol Chem (30 January 2006)
    by Mandar R R Bhonde, Marie-Luise L Hanski, Jan Budczies, Minh Cao, Bernd Gillissen, Dhatchana Moorthy, Federico Simonetta, Hans Scherübl, Matthias Truss, Christian Hagemeier, H W W Mewes, Peter T T Daniel, Martin Zeitz, Christoph Hanski
    posted to apoptosis microarray by tabu on 2006-02-02 00:48:57 as **
  • A haplotype map of the human genome.
    Nature, Vol. 437, No. 7063. (27 October 2005), pp. 1299-1320.
    by D Altshuler, LD Brooks, A Chakravarti, FS Collins, MJ Daly, P Donnelly,
  • Network structures and algorithms in Bioconductor
    Bioinformatics, Vol. 21, No. 1., 135.
    by Vincent J Carey, Jeff Gentry, Elizabeth Whalen, Robert Gentleman
    posted to bioconductor network by tabu on 2006-02-01 16:48:02 as ** along with 1 person samal
  • Identification of Promoters Bound by c-Jun/ATF2 during Rapid Large-Scale Gene Activation following Genotoxic Stress
    Molecular Cell, Vol. 16, No. 4. (19 November 2004), pp. 521-535.
    by Jun Hayakawa, Shalu Mittal, Yipeng Wang, Kemal S Korkmaz, Eileen Adamson, Christopher English, Masahide Omichi, Michael Mcclelland, Dan Mercola
    posted to chip-chip by tabu on 2006-02-01 10:03:34 as **
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