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timflutre phylogeny [22 articles]

Recent papers added to timflutre library classified by the tag phylogeny. You can also see everyone's phylogeny.
  • Probabilistic Phylogenetic Inference with Insertions and Deletions
    PLoS Comput Biol, Vol. 4, No. 9. (2008), e1000172.
    by Elena Rivas, Sean R Eddy
    posted to phylogeny molec_evo modeling bioinformatics by timflutre on 2008-10-07 13:44:58 as ** along with 6 people nuin druvus djkt aprasad gjuggler emptyhb
  • Unravelling angiosperm genome evolution by phylogenetic analysis of chromosomal duplication events.
    Nature, Vol. 422, No. 6930. (27 March 2003), pp. 433-438.
    by JE Bowers, BA Chapman, J Rong, AH Paterson
    posted to plants phylogeny genomics duplications angiosperms by timflutre on 2008-09-22 17:21:35 as **
  • notes An evolutionary model for maximum likelihood alignment of DNA sequences.
    Journal of molecular evolution, Vol. 33, No. 2. (August 1991), pp. 114-124.
    by JL Thorne, H Kishino, J Felsenstein
    posted to alignment bioinformatics molec_evo phylogeny by timflutre on 2008-08-13 09:32:17 as ** along with 1 person gjuggler
  • Secator: a program for inferring protein subfamilies from phylogenetic trees.
    Molecular biology and evolution, Vol. 18, No. 8. (August 2001), pp. 1435-1441.
    by N Wicker, GR Perrin, JC Thierry, O Poch
    posted to bioinformatics clustering phylogeny by timflutre on 2008-08-12 09:07:03 as **
  • Whole-genome analysis of Alu repeat elements reveals complex evolutionary history.
    Genome research, Vol. 14, No. 11. (November 2004), pp. 2245-2252.
    by AL Price, E Eskin, PA Pevzner
    posted to humans phylogeny repeats te by timflutre on 2008-08-12 08:58:25 as ****
  • Models of molecular evolution and phylogeny.
    Genome research, Vol. 8, No. 12. (December 1998), pp. 1233-1244.
    by P Liò, N Goldman
    posted to modeling molec_evo phylogeny by timflutre on 2008-08-08 16:40:30 as ** along with 1 person hdopazo
  • notes Maximum-likelihood estimation of phylogeny from DNA sequences when substitution rates differ over sites.
    Mol Biol Evol, Vol. 10, No. 6. (November 1993), pp. 1396-1401.
    by Z Yang
    posted to molec_evo phylogeny stats by timflutre on 2008-06-12 19:08:28 as ** along with 1 person bpb
  • notes Estimating the pattern of nucleotide substitution
    Journal of Molecular Evolution, Vol. 39, No. 1. (1 July 1994), pp. 105-111.
    by Ziheng Yang
    posted to molec_evo phylogeny by timflutre on 2008-06-12 18:44:17 as ** along with 1 person CharlesM
  • notes Confidence Limits on Phylogenies: An Approach Using the Bootstrap
    Evolution, Vol. 39, No. 4. (1985), pp. 783-791.
    by Joseph Felsenstein
    posted to bioinformatics molec_evo phylogeny stats by timflutre on 2008-06-12 17:48:05 as ** along with 1 person bandrewfox
  • notes Rooting a phylogenetic tree with nonreversible substitution models.
    BMC evolutionary biology, Vol. 5, No. 1. (4 January 2005)
    by VB Yap, T Speed
    posted to molec_evo phylogeny by timflutre on 2008-06-12 17:26:22 as read
  • notes Molecular phylogenetics: state-of-the-art methods for looking into the past
    Trends in Genetics, Vol. 17, No. 5. (1 May 2001), pp. 262-272.
    by Simon Whelan, Pietro Lio, Nick Goldman
    posted to molec_evo phylogeny stats by timflutre on 2008-05-19 14:18:28 as read along with 3 people druvus dayjm BioNica
  • Phylogenomics of the nucleosome.
    Nat Struct Biol, Vol. 10, No. 11. (November 2003), pp. 882-891.
    by HS Malik, S Henikoff
    posted to nucleosome phylogeny by timflutre on 2008-03-27 23:24:38 as **
  • The Mathematics of Phylogenomics
    SIAM Review, Vol. 49, No. 1. (2007), pp. 3-31.
    by Lior Pachter, Bernd Sturmfels
    posted to genomics phylogeny by timflutre on 2007-12-05 14:33:43 as ** along with 1 person yalding
  • Evolution of genes and genomes on the Drosophila phylogeny
    Nature, Vol. 450, No. 7167. (November 2007), pp. 203-218.
    posted to droso genomics phylogeny by timflutre on 2007-11-19 08:37:20 as ** along with 20 people and 6 groups pengchy operon tmmurali indigoviolet djkt stajich zwang Garamonfok lp2 CharlesM hpaces caseybrown emptyhb urgi noor PetrovLab isimpson balicea cisevol hdopazo Bioinformatics EisenLab csb_journal_club_public Berkeley Mycology BergmanLab Drosophila-Genetics-Genomics-2008
  • A Simple, Fast, and Accurate Algorithm to Estimate Large Phylogenies by Maximum Likelihood
    Systematic Biology, Vol. 52, No. 5. (2003), pp. 696-704.
    by Stéphane Guindon, Olivier Gascuel
    posted to bioinformatics phylogeny by timflutre on 2007-09-24 13:15:58 as ** along with 1 person urgi
  • notes Evolutionary trees from DNA sequences: a maximum likelihood approach.
    Journal of Molecular Evolution, Vol. 17, No. 6. (1981), pp. 368-376.
    by J Felsenstein
    posted to phylogeny by timflutre on 2007-09-04 13:43:24 as ** along with 7 people and 1 group bpb chrn kaspermunch dquest djkt dmc elfar Bioinformatics
  • Phylogeny estimation:traditional and bayesian approaches
    Nature Reviews Genetics, Vol. 4 (2003), pp. 275-284.
    by MT Holder
    posted to phylogeny by timflutre on 2007-08-23 21:30:47 as **
  • Phylogenetic Analysis and Comparative Data: A Test and Review of Evidence
    The American Naturalist, Vol. 160 (2002), pp. 712-726.
    by RP Freckleton, PH Harvey, M Pagel
    posted to phylogeny by timflutre on 2007-08-23 18:49:14 as **
  • Bayesian coestimation of phylogeny and sequence alignment.
    BMC Bioinformatics, Vol. 6 (2005), pp. 83-93.
    by G Lunter, I Miklós, A Drummond, JL Jensen, J Hein
    posted to bioinformatics phylogeny by timflutre on 2007-07-24 23:45:05 as ** along with 6 people druvus bpb pradiptaray AaronDarling adsmitty Patola
  • Evolution of genes and taxa: a primer.
    Plant Molecular Biology, Vol. 42, No. 1. (January 2000), pp. 1-23.
    by JJ Doyle, BS Gaut
    posted to phylogeny pop_genetics by timflutre on 2007-07-24 23:41:56 as **
  • The Posterior and the Prior in Bayesian Phylogenetics
    Annual Review of Ecology, Evolution, and Systematics, Vol. 37 (2006), pp. 19-42.
    by ME Alfaro, MT Holder
    posted to phylogeny by timflutre on 2007-06-22 11:32:39 as **
  • Animal evolution. The end of the intermediate taxa?
    Trends Genet, Vol. 15, No. 3. (March 1999), pp. 104-108.
    by A Adoutte, G Balavoine, N Lartillot, R de Rosa
    posted to biodiversity phylogeny by timflutre on 2007-01-14 17:02:27 as ** along with 3 people altotor hervelequere tanchize
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