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willpitt library [18 articles]

Статьи, недавно добавленные в библиотеку willpitt .
  • How Well Can We Understand Large-Scale Protein Motions Using Normal Modes of Elastic Network Models?
    Biophys J (4 May 2007)
    by Lei Yang, Guang Song, Robert L L Jernigan
  • Structure-based maximal affinity model predicts small-molecule druggability
    Nature Biotechnology, Vol. 25, No. 1. (08 January 2007), pp. 71-75.
    by Alan C Cheng, Ryan G Coleman, Kathleen T Smyth, Qing Cao, Patricia Soulard, Daniel R Caffrey, Anna C Salzberg, Enoch S Huang
  • Identification of hot spots within druggable binding regions by computational solvent mapping of proteins.
    J Med Chem, Vol. 50, No. 6. (22 March 2007), pp. 1231-1240.
    by MR Landon, DR Lancia, J Yu, SC Thiel, S Vajda
    posted to binding druggable sites by willpitt on 2008-02-28 10:16:17 as ***** along with 1 person tjimenez
  • Strategies to search and design stabilizers of protein-protein interactions: A feasibility study.
    Proteins (28 March 2007)
    by Peter Block, Nils Weskamp, Alexander Wolf, Gerhard Klebe
  • A simple and fuzzy method to align and compare druggable ligand-binding sites
    Proteins: Structure, Function, and Bioinformatics, Vol. 9999, No. 9999. (2007), NA.
    by Claire Schalon, Jean-Sébastien Surgand, Esther Kellenberger, Didier Rognan
    posted to binding druggable sites by willpitt on 2008-02-28 10:03:39 as ** along with 3 people tjimenez bicko nickolay
  • HingeProt: Automated prediction of hinges in protein structures
    Proteins: Structure, Function, and Bioinformatics, Vol. 9999, No. 9999. (2007), NA.
    by Ugur Emekli, Dina Schneidman-Duhovny, Haim J Wolfson, Ruth Nussinov, Turkan Haliloglu
  • Medicinal chemistry of target family-directed masterkeys
    Drug Discovery Today, Vol. 8, No. 15. (1 August 2003), pp. 681-691.
    by Gerhard Muller
    posted to hotspots by willpitt on 2008-02-27 13:37:34 as ****
  • Molecular recognition: the fragment approach in lead generation
    Drug Discovery Today, Vol. 9, No. 5. (1 March 2004), pp. 229-238.
    by Daniela Fattori
    posted to hotspots by willpitt on 2008-02-27 13:36:56 as **
  • DOCK 4.0: Search strategies for automated molecular docking of flexible molecule databases
    Journal of Computer-Aided Molecular Design, Vol. 15, No. 5. (1 May 2001), pp. 411-428.
    by Todd J Ewing, Shingo Makino, Geoffrey A Skillman, Irwin D Kuntz
    posted to hotspots by willpitt on 2008-02-27 13:25:01 as **
  • Energy landscape theory, funnels, specificity, and optimal criterion of biomolecular binding.
    Phys Rev Lett, Vol. 90, No. 18. (9 May 2003)
    by J Wang, GM Verkhivker
    posted to hotspots by willpitt on 2008-02-27 13:05:11 as **
  • The role of protein dynamics in increasing binding affinity for an engineered protein-protein interaction established by H/D exchange mass spectrometry.
    Biochemistry, Vol. 45, No. 28. (18 July 2006), pp. 8488-8498.
    by JR Horn, B Kraybill, EJ Petro, SJ Coales, JA Morrow, Y Hamuro, AA Kossiakoff
    posted to folding-binding by willpitt on 2008-02-27 12:13:20 as **
  • Monte Carlo simulations of the peptide recognition at the consensus binding site of the constant fragment of human immunoglobulin G: the energy landscape analysis of a hot spot at the intermolecular interface.
    Proteins, Vol. 48, No. 3. (15 August 2002), pp. 539-557.
    by GM Verkhivker, D Bouzida, DK Gehlhaar, PA Rejto, ST Freer, PW Rose
    posted to hotspots by willpitt on 2008-02-27 12:07:41 as **** along with 1 person higueruelo
  • Computational detection of the binding-site hot spot at the remodeled human growth hormone-receptor interface.
    Proteins, Vol. 53, No. 2. (1 November 2003), pp. 201-219.
    by GM Verkhivker, D Bouzida, DK Gehlhaar, PA Rejto, ST Freer, PW Rose
    posted to hotspots by willpitt on 2008-02-27 12:05:21 as ***
  • Computational analysis of ligand binding dynamics at the intermolecular hot spots with the aid of simulated tempering and binding free energy calculations.
    J Mol Graph Model, Vol. 22, No. 5. (May 2004), pp. 335-348.
    posted to hotspots by willpitt on 2008-02-27 12:02:01 as ****
  • Protein conformational transitions coupled to binding in molecular recognition of unstructured proteins: hierarchy of structural loss from all-atom Monte Carlo simulations of p27Kip1 unfolding-unbinding and structural determinants of the binding mechanism.
    Biopolymers, Vol. 75, No. 5. (5 December 2004), pp. 420-433.
    posted to folding-binding by willpitt on 2008-02-27 11:59:48 as ***
  • Quantifying intrinsic specificity: a potential complement to affinity in drug screening.
    Phys Rev Lett, Vol. 99, No. 19. (9 November 2007)
    by J Wang, X Zheng, Y Yang, D Drueckhammer, W Yang, G Verkhivker, E Wang
    posted to hotspots by willpitt on 2008-02-27 11:55:45 as ***
  • Molecular dynamics force probe simulations of antibody/antigen unbinding: entropic control and nonadditivity of unbinding forces.
    Biophys J, Vol. 81, No. 3. (September 2001), pp. 1295-1313.
    posted to folding-binding by willpitt on 2008-02-27 11:50:31 as **
  • Unraveling principles of lead discovery: from unfrustrated energy landscapes to novel molecular anchors.
    Proc Natl Acad Sci U S A, Vol. 93, No. 17. (20 August 1996), pp. 8945-8950.
    by PA Rejto, GM Verkhivker
    posted to hotspots by willpitt on 2008-02-27 11:41:23 as read
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