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wnpx inference [43 articles]

Recent papers added to wnpx library classified by the tag inference. You can also see everyone's inference.
  • Inferring Transcriptional Regulatory Networks from High-throughput Data.
    Bioinformatics (22 September 2007)
    by Rui-Sheng S Wang, Yong Wang, Xiang-Sun S Zhang, Luonan Chen
    posted to inference network regulation transcription by wnpx on 2007-11-21 15:35:54 as ** along with 4 people rdiaz sebastien_vigneau shigepong cabbagezs
  • From correlation to causation networks: a simple approximate learning algorithm and its application to high-dimensional plant gene expression data
    BMC Systems Biology, Vol. 1, No. 1. (2007)
    by Rainer O Rhein, Korbinian Strimmer
    posted to inference r by wnpx on 2007-08-06 16:19:58 as ** along with 3 people GeeSharpMinor jo_davies heliopais
  • Adaptively inferring human transcriptional subnetworks.
    Mol Syst Biol, Vol. 2 (2006)
    by D Das, Z Nahlé, MQ Zhang
    posted to inference by wnpx on 2007-03-22 21:50:12 as ** along with 4 people tmmurali Ao_Li2007 kmdaily heliopais
  • Importance of input perturbations and stochastic gene expression in the reverse engineering of genetic regulatory networks: insights from an identifiability analysis of an in silico network.
    Genome Res, Vol. 13, No. 11. (November 2003), pp. 2396-2405.
    by DE Zak, GE Gonye, JS Schwaber, FJ Doyle
    posted to expression gene inference perturbation by wnpx on 2007-03-22 21:46:05 as ** along with 4 people lukaswindhager ryang jrbanga bertelsen
  • Probabilistic inference of molecular networks from noisy data sources
    Bioinformatics, Vol. 20, No. 8. (22 May 2004), pp. 1205-1213.
    by Ivan Iossifov, Michael Krauthammer, Carol Friedman, Vasileios Hatzivassiloglou, Joel S Bader, Kevin P White, Andrey Rzhetsky
    posted to bayesian dt inference od toread by wnpx on 2007-03-22 21:44:29 as *** along with 1 person iris_2001
  • Inference of disease-related molecular logic from systems-based microarray analysis.
    PLoS Comput Biol, Vol. 2, No. 6. (16 June 2006)
    by V Varadan, D Anastassiou
    posted to inference by wnpx on 2007-03-22 21:43:07 as ** along with 4 people jfr Ao_Li2007 macavity1g hani_goodarzi
  • How to infer gene networks from expression profiles
    Mol Syst Biol, Vol. 3 (13 February 2007)
    by Mukesh Bansal, Vincenzo Belcastro, Alberto Ambesi-Impiombato, Diego di Bernardo
    posted to expression gene inference network by wnpx on 2007-03-17 11:37:39 as ** along with 12 people and 2 groups mariakmejia jfr eckart_bindewald nickluscombe kengg mikaelhuss jrbanga BIBLIOma RockHI lp2 natstreet heliopais EBI-regulation Plantandetc
  • Supervised graph inference
    (2005), pp. 1433-1440.
    by Jean-Philippe Vert, Yoshihiro Yamanishi
    posted to graph inference machinelearning supervised toread by wnpx on 2007-03-08 19:20:29 as ** along with 1 person and 1 group lfriedl kdl
  • A new dynamic Bayesian network (DBN) approach for identifying gene regulatory networks from time course microarray data.
    Bioinformatics, Vol. 21, No. 1. (1 January 2005), pp. 71-79.
    by M Zou, SD Conzen
    posted to inference dbn bayesian by wnpx on 2007-02-05 18:08:53 as **
  • A Bayesian connectivity-based approach to constructing probabilistic gene regulatory networks.
    Bioinformatics, Vol. 20, No. 17. (22 November 2004), pp. 2918-2927.
    by X Zhou, X Wang, R Pal, I Ivanov, M Bittner, ER Dougherty
    posted to reconstruction network inference gene bayesian by wnpx on 2007-02-05 18:00:21 as **
  • Inferring dynamic architecture of cellular networks using time series of gene expression, protein and metabolite data.
    Bioinformatics, Vol. 20, No. 12. (12 August 2004), pp. 1877-1886.
    by E Sontag, A Kiyatkin, BN Kholodenko
    posted to timeseries reconstruction proteindata metabolitedata inference getwork gene expression dynamic by wnpx on 2007-02-05 17:53:38 as ** along with 4 people and 3 groups camster dbk mrm smgomez streptomyces dbk-lab GomezLab
  • Reconstructing biological networks using conditional correlation analysis.
    Bioinformatics, Vol. 21, No. 6. (March 2005), pp. 765-773.
    by JJ Rice, Y Tu, G Stolovitzky
    posted to reverseengineering regulation reconstruction network inference gene correlation by wnpx on 2007-02-05 17:48:37 as **
  • Reconstructing gene-regulatory networks from time series, knock-out data, and prior knowledge
    BMC Systems Biology, Vol. 1, No. 1. (2007)
    by Florian Geier, Jens Timmer, Christian Fleck
    posted to toread inference bayesian by wnpx on 2007-02-03 19:14:18 as ** along with 3 people jyuh tuck Ao_Li2007
  • Inferring causal relationships among intermediate phenotypes and biomarkers: a case study of rheumatoid arthritis.
    Bioinformatics, Vol. 22, No. 12. (15 June 2006), pp. 1503-1507.
    by W Li, M Wang, P Irigoyen, PK Gregersen
    posted to causality inference by wnpx on 2006-09-02 11:33:20 as ** along with 2 people and 1 group giovanni josepe GeschwindLab
  • Inferring protein interactions from phylogenetic distance matrices.
    Bioinformatics, Vol. 19, No. 16. (1 November 2003), pp. 2039-2045.
    by J Gertz, G Elfond, A Shustrova, M Weisinger, M Pellegrini, S Cokus, B Rothschild
    posted to inference interaction phylogeny protein by wnpx on 2006-08-24 18:48:09 as ** along with 3 people and 1 group lfriedl balajis ruvido kdl
  • Inferring network mechanisms: the Drosophila melanogaster protein interaction network.
    Proc Natl Acad Sci U S A, Vol. 102, No. 9. (1 March 2005), pp. 3192-3197.
    by M Middendorf, E Ziv, CH Wiggins
    posted to inference interaction network protein by wnpx on 2006-08-24 18:46:19 as ** along with 3 people and 1 group lfriedl jaspervoskuilen iris_2001 kdl
  • WinBUGS – A Bayesian modelling framework: Concepts, structure, and extensibility
    Statistics and Computing, Vol. 10, No. 4. (October 2000), pp. 325-337.
    by David J Lunn, Andrew Thomas, Nicky Best, David Spiegelhalter
    posted to bayesian implementation inference by wnpx on 2006-07-28 12:48:44 as ****
  • VIBES: A Variational Inference Engine for Bayesian Networks
    (2002)
    by Christopher M Bishop, David Spiegelhalter, John Winn
    posted to bayesian implementation inference variational variationalbayes by wnpx on 2006-07-28 12:46:46 as ****
  • An evaluation of explanations of probabilistic inference.
    Comput Biomed Res, Vol. 26, No. 3. (June 1993), pp. 242-254.
    by HJ Suermondt, GF Cooper
    posted to explanation inference probabilistic by wnpx on 2006-07-28 12:38:22 as ** along with 1 person suizan
  • Bayesian sequential inference for stochastic kinetic biochemical network models.
    J Comput Biol, Vol. 13, No. 3. (April 2006), pp. 838-851.
    by A Golightly, DJ Wilkinson
    posted to bayesian inference kinetics stochastic by wnpx on 2006-07-26 20:51:42 as **
  • Inference in belief networks: A procedural guide
    International Journal of Approximate Reasoning, Vol. 15, No. 3. (1996), pp. 225-263.
    by C Huang, A Darwiche
    posted to bayesian bayesnet inference network by wnpx on 2006-07-13 18:43:32 as ** along with 3 people dcoates suizan peterhearty
  • The Factored Frontier Algorithm for Approximate Inference in DBNs
    pp. 378-385.
    by Kevin Murphy, Yair Weiss
    posted to algorithm approximate dbn inference by wnpx on 2006-07-13 18:12:57 as **
  • Query DAGs: A Practical Paradigm for Implementing Belief-Network Inference
    Journal of Artificial Intelligence Research, Vol. 6 (1997), pp. 147-176.
    by Adnan Darwiche, Gregory M Provan
    posted to bayesian bayesnet implementation inference network query by wnpx on 2006-07-13 18:12:20 as **** along with 1 person jrw
  • Inference and Learning in Hybrid Bayesian Networks
    No. CSD-98-990. (November, 1998)
    by Kevin P Murphy
    posted to bayesian bayesnet dbn hybrid inference learning by wnpx on 2006-07-13 17:59:27 as **
  • An Introduction to Bayesian Reference Analysis: Inference on the Ratio of Multinomial Parameters
    by Jose M Bernardo, Jose M Ramon
    posted to bayesian inference by wnpx on 2006-04-18 14:28:17 as ** along with 2 people yaroslavvb jrw
  • Bayesian Inference in Cyclical Component Dynamic Linear Models
    Journal of the American Statistical Association, Vol. 90, No. 432. (???? 1995), pp. 1301-1312.
    by Mike West
    posted to bayes bayesian inference timeseries by wnpx on 2006-02-23 14:21:35 as ** along with 1 person rpadams
  • Learning the Structure of Dynamic Probabilistic Networks
    (1999), pp. 139-147.
    by Nir Friedman, Kevin Murphy, Stuart Russell
    posted to bayesian bayesnets inference learning structure by wnpx on 2006-01-30 16:35:12 as ** along with 3 people ryang ddahlem sj777
  • Bayesian network analysis of signaling networks: a primer.
    Sci STKE, Vol. 2005, No. 281. (26 April 2005)
    by D Pe'er
    posted to bayesian bayesnet inference network signaling toread by wnpx on 2006-01-30 16:32:36 as **** along with 4 people tmmurali Borelli ryang jhatrimatri
  • A Bayesian Method for the Induction of Probabilistic Networks from Data
    Machine Learning, Vol. 9 (1992), pp. 309-347.
    by Gf Cooper, E Herskovits
    posted to bayesian bayesnet induction inference network by wnpx on 2006-01-30 16:19:55 as ** along with 1 person abhik
  • Readings in Uncertain Reasoning (Morgan Kaufmann Series in Representation and Reasoning)
    by Glenn Shafer
    posted to bayesian book inference lib-hut loan reasoning by wnpx on 2006-01-30 14:05:45 as **
  • Probabilistic Reasoning in Intelligent Systems : Networks of Plausible Inference
    (01 September 1988)
    by Judea Pearl
    posted to lib-hut inference dt book bayesnet bayesian by wnpx on 2006-01-30 14:02:34 as ** along with 11 people quianominorleo naegele robotact tdlt leidner pcarbo fheintz wasteland93 fsteeg lcigler 1like
  • Causality: Models, Reasoning, and Inference
    (13 March 2000)
    by Judea Pearl
    posted to reasoning loan lib-hut inference dt causality book bayesian by wnpx on 2006-01-30 13:58:32 as ** along with 9 people rrbarb pylikosk quianominorleo abbie_riner paulclinger mp4man helsley robotact soc597
  • Temporal Boolean Network Models of Genetic Networks and Their Inference from Gene Expression Time Series
    Complex Systems, Vol. 13 (2001), pp. 54-70.
    by Adrian Silvescu, Vasant Honavar
    posted to booleannet inference by wnpx on 2006-01-30 13:52:16 as **
  • Development of a system for the inference of large scale genetic networks.
    Pac Symp Biocomput (2001), pp. 446-458.
    by Y Maki, D Tominaga, M Okamoto, S Watanabe, Y Eguchi
    posted to bayesian dbn gene inference network by wnpx on 2006-01-30 13:50:59 as **
  • Information Theory, Inference & Learning Algorithms
    (15 June 2002)
    by David JC Mackay
    posted to book dt inference informationtheory loan machinelearning probabilisticmodeling by wnpx on 2006-01-20 19:58:35 as *** along with 40 people and 5 groups luispedro matjes delip lop ekatsyrk quianominorleo markusd A_Olympia ansobol yaroslavvb JoSeK ingo jrw rpadams gyuli dariusb simonjudge leidner bayesian BarrosH filippone marcosmuller danielaugot zielaj daveh spirit_of_numenor sbarthelme anon_pl dwf petrijooste wowbagger nrubens chrisc rsantana fishtank rwilliamson poluxmoon robertoalamino brianmc robotact Philosophy_of_Information Blog_and_Wiki_Research AssistiveTechnology inference-group ComplexAdaptiveSystems
  • Tree-based reparameterization framework for analysis of belief propagation and related algorithms
    (2003)
    by M Wainwright, T Jaakkola, A Willsky
    posted to bayesian bayesnet graphicalmodels inference by wnpx on 2006-01-03 21:43:11 as ** along with 1 person mukundn
  • Causal Protein-Signaling Networks Derived from Multiparameter Single-Cell Data
    Science, Vol. 308, No. 5721. (22 April 2005), pp. 523-529.
    by Karen Sachs, Omar Perez, Dana Pe'er, Douglas A Lauffenburger, Garry P Nolan
    posted to bayesian causality inference network signaling by wnpx on 2006-01-02 16:21:28 as **** along with 12 people and 1 group kentsis kaarsinogen balajis rand_bayes ryang os252 j3xucite noano koller jhatrimatri cdppublications lp2 CDP
  • Dynamic Bayesian network and nonparametric regression for nonlinear modeling of gene networks from time series gene expression data
    Biosystems, Vol. 75, No. 1-3. (July 2004), pp. 57-65.
    by Sunyong Kim, Seiya Imoto, Satoru Miyano
    posted to bayesian bayesnet dbn gene inference network by wnpx on 2006-01-02 16:12:50 as *** along with 3 people ryang scotts_43035 edwardmorrissey
  • Inferring subnetworks from perturbed expression profiles.
    Bioinformatics, Vol. 17 Suppl 1 (2001)
    by Dana Pe’er, Aviv Regev, Gal Elidan, Nir Friedman
    posted to timeseries perturbation network inference expressiondata dt by wnpx on 2005-12-29 17:13:55 as *** along with 1 person frohike
  • Modelling regulatory pathways in E. coli from time series expression profiles.
    Bioinformatics, Vol. 18 Suppl 1 (2002)
    by IM Ong, JD Glasner, D Page
    posted to expressiondata inference network pathway timeseries by wnpx on 2005-12-29 17:12:52 as *** along with 1 person balicea
  • Influence of network topology and data collection on network inference.
    Pac Symp Biocomput (2003), pp. 164-175.
    by VA Smith, ED Jarvis, AJ Hartemink
    posted to bayesian inference by wnpx on 2005-12-29 17:07:07 as ***
  • Inferring cellular networks using probabilistic graphical models.
    Science, Vol. 303, No. 5659. (6 February 2004), pp. 799-805.
    by Nir Friedman
    posted to review inference dt bayes by wnpx on 2005-12-29 16:57:37 as read along with 14 people and 1 group srp33 ldfu ujh lfriedl opheliav ryang nirfriedman neveaire koller helsley dimatura edwardmorrissey vietanh0 Yumyai kdl
  • Incorporating biological knowledge into evaluation of causal regulatory hypotheses.
    Pac Symp Biocomput (2003), pp. 128-139.
    by L Chrisman, P Langley, S Bay, A Pohorille
    posted to bayesian causality dataintegration evaluationstudies inference priorknowledge by wnpx on 2005-12-29 16:36:44 as read
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