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wnpx protein [29 articles]

Recent papers added to wnpx library classified by the tag protein. You can also see everyone's protein.
  • Computational protein function prediction: Are we making progress?
    Cell Mol Life Sci (5 July 2007)
    by A Godzik, M Jambon, I Friedberg
    posted to function prediction protein by wnpx on 2007-08-10 09:59:21 as ** along with 4 people aalibes tjimenez Jporci nklee
  • Network-based prediction of protein function
    Mol Syst Biol, Vol. 3 (13 March 2007)
    by Roded Sharan, Igor Ulitsky, Ron Shamir
    posted to function network prediction protein by wnpx on 2007-06-11 07:19:43 as ** along with 11 people and 1 group ellakat carlk jjray cmmorel julius mikaelhuss massivemayhem cjeans iris_2001 karfunkel mingzhi SysbioMPI-TCells
  • Automatic generation of cellular reaction networks with Moleculizer 1.0
    Nature Biotechnology, Vol. 23, No. 1. (06 January 2005), pp. 131-136.
    by Larry Lok, Roger Brent
    posted to complex modeling protein simulation stochastic by wnpx on 2007-04-01 11:34:50 as ** along with 2 people rklancer oelemento
  • Predicting protein functions from redundancies in large-scale protein interaction networks.
    Proc Natl Acad Sci U S A, Vol. 100, No. 22. (28 October 2003), pp. 12579-12583.
    by MP Samanta, S Liang
    posted to interaction protein toread by wnpx on 2007-03-25 19:27:07 as ** along with 1 person carlk
  • Potential artefacts in protein-interaction networks.
    FEBS Lett, Vol. 530, No. 1-3. (23 October 2002), pp. 253-254.
    by P Aloy, RB Russell
    posted to interaction protein by wnpx on 2007-03-22 21:51:40 as ** along with 3 people chad_davis gurkanbebek ruvido
  • A protein interaction network for pluripotency of embryonic stem cells
    Nature
    by Jianlong Wang, Sridhar Rao, Jianlin Chu, Xiaohua Shen, Dana N Levasseur, Thorold W Theunissen, Stuart H Orkin
    posted to cell interaction protein stem toread by wnpx on 2007-03-22 21:46:40 as ** along with 6 people and 2 groups kentsis marcius yeastyboy Ao_Li2007 iris_2001 tdmckee BioinfoCIPF SGU-CIPF
  • Statistical analysis of domains in interacting protein pairs
    Bioinformatics, Vol. 21, No. 7. (01 April 2005), pp. 993-1001.
    by MW Nye, Berzuini Carlo, R Gilks, Babu M Madan, A Teichmann
    posted to domain interaction protein statistics by wnpx on 2007-03-17 11:38:37 as ** along with 5 people and 1 group lfriedl chad_davis neils iris_2001 phoenixzxl kdl
  • A probability-based approach for high-throughput protein phosphorylation analysis and site localization
    Nature Biotechnology, Vol. 24, No. 10. (10 September 2006), pp. 1285-1292.
    by Sean A Beausoleil, Judit Villén, Scott A Gerber, John Rush, Steven P Gygi
    posted to bayesian dt protein toread by wnpx on 2007-02-11 17:46:06 as ** along with 4 people Thomasah jyuh csardas Ao_Li2007
  • Stochastic protein expression in individual cells at the single molecule level
    Nature, Vol. 440, No. 7082., pp. 358-362.
    by Long Cai, Nir Friedman, Sunney X Xie
    posted to stochasticity protein by wnpx on 2007-01-10 15:18:02 as ** along with 12 people and 1 group jjray austin okarsligil ccots bayesian balabu cottrell jiyu mmt jtaylor margaritis cjeans Bioinformatics
  • IntNetDB v1.0: An integrated protein-protein interaction network database generated by a probabilistic model
    BMC Bioinformatics, Vol. 7 (18 November 2006), 508.
    by Kai Xia, Dong Dong, Jing-Dong J Han
    posted to interaction network probabilistic protein by wnpx on 2006-11-18 18:08:37 as ** along with 3 people cdallett nedwards maralena
  • Bayesian search of functionally divergent protein subgroups and their function specific residues.
    Bioinformatics (26 July 2006)
    by Pekka Marttinen, Jukka Corander, Petri Törönen, Liisa Holm
    posted to bayesian protein by wnpx on 2006-10-21 16:49:43 as ** along with 2 people Terkko plofje
  • Inferring protein interactions from phylogenetic distance matrices.
    Bioinformatics, Vol. 19, No. 16. (1 November 2003), pp. 2039-2045.
    by J Gertz, G Elfond, A Shustrova, M Weisinger, M Pellegrini, S Cokus, B Rothschild
    posted to inference interaction phylogeny protein by wnpx on 2006-08-24 18:48:09 as ** along with 3 people and 1 group lfriedl balajis ruvido kdl
  • Inferring network mechanisms: the Drosophila melanogaster protein interaction network.
    Proc Natl Acad Sci U S A, Vol. 102, No. 9. (1 March 2005), pp. 3192-3197.
    by M Middendorf, E Ziv, CH Wiggins
    posted to inference interaction network protein by wnpx on 2006-08-24 18:46:19 as ** along with 3 people and 1 group lfriedl jaspervoskuilen iris_2001 kdl
  • Bridging structural biology and genomics: assessing protein interaction data with known complexes
    Trends in Genetics, Vol. 18, No. 10. (1 October 2002), pp. 529-536.
    by Aled M Edwards, Bart Kus, Ronald Jansen, Dov Greenbaum, Jack Greenblatt, Mark Gerstein
    posted to bayesian complex dt interaction network protein toread by wnpx on 2006-08-24 18:45:59 as *** along with 4 people and 1 group lfriedl reidy ruvido wilbur kdl
  • Towards an integrated protein-protein interaction network: a relational markov network approach.
    J Comput Biol, Vol. 13, No. 2. (March 2006), pp. 145-164.
    by A Jaimovich, G Elidan, H Margalit, N Friedman
    posted to markov network prediction probabilistic protein proteininteraction by wnpx on 2006-08-24 18:36:29 as ** along with 5 people and 1 group lfriedl nirfriedman koller rsantana iris_2001 kdl
  • Towards a proteome-scale map of the human protein–protein interaction network
    Nature (28 September 2005)
    by Jean-François Rual, Kavitha Venkatesan, Tong Hao, Tomoko Hirozane-Kishikawa, Amélie Dricot, Ning Li, Gabriel F Berriz, Francis D Gibbons, Matija Dreze, Nono Ayivi-Guedehoussou, Niels Klitgord, Christophe Simon, Mike Boxem, Stuart Milstein, Jennifer Rosenberg, Debra S Goldberg, Lan V Zhang, Sharyl L Wong, Giovanni Franklin, Siming Li, Joanna S Albala, Janghoo Lim, Carlene Fraughton, Estelle Llamosas, Sebiha Cevik, Camille Bex, Philippe Lamesch, Robert S Sikorski, Jean Vandenhaute, Huda Y Zoghbi, Alex Smolyar, Stephanie Bosak, Reynaldo Sequerra, Lynn Doucette-Stamm, Michael E Cusick, David E Hill, Frederick P Roth, Marc Vidal
    posted to human protein proteininteraction by wnpx on 2006-07-30 16:54:27 as ** along with 18 people and 2 groups ksiek csanford dragonrez kuhn okarsligil jfr lyongu maryee benny yoh noano gurkanbebek mbeautru eukfn grahamc lpfernandes antonkratz Evangelia Bioinformatics ParkinsonLab_at_MaRS
  • Estimating gene regulatory networks and protein-protein interactions of Saccharomyces cerevisiae from multiple genome-wide data.
    Bioinformatics, Vol. 21 Suppl 2 (1 September 2005)
    by N Nariai, Y Tamada, S Imoto, S Miyano
    posted to network protein proteininteraction regulation yeast by wnpx on 2006-07-30 16:52:50 as ** along with 2 people noano koller
  • Efficient algorithms for detecting signaling pathways in protein interaction networks.
    J Comput Biol, Vol. 13, No. 2. (March 2006), pp. 133-144.
    by J Scott, T Ideker, RM Karp, R Sharan
    posted to interaction network pathway protein signaling by wnpx on 2006-07-30 16:47:42 as ** along with 4 people carlk gurkanbebek koller iris_2001
  • A Graphical Model for Predicting Protein Molecular Function
    (2006)
    by Barbara E Engelhardt, Michael I Jordan, Steven E Brenner
    posted to functionprediction graphicalmodels protein by wnpx on 2006-07-28 12:19:04 as **
  • Using protein-protein interactions for refining gene networks estimated from microarray data by Bayesian networks.
    Pac Symp Biocomput (2004), pp. 336-347.
    by N Nariai, S Kim, S Imoto, S Miyano
    posted to bayesian gene interaction network protein by wnpx on 2006-07-26 20:54:15 as ** along with 2 people Borelli noano
  • Filtering high-throughput protein-protein interaction data using a combination of genomic features.
    BMC Bioinformatics, Vol. 6, No. 1. (2005)
    by A Patil, H Nakamura
    posted to bayesian dataintegration interaction protein by wnpx on 2006-07-26 20:52:45 as ** along with 3 people and 1 group carlk abhik lfriedl kdl
  • Discovering molecular pathways from protein interaction and gene expression data.
    Bioinformatics, Vol. 19 Suppl 1 (2003)
    by E Segal, H Wang, D Koller
    posted to bio expressiondata gene interactiondata learning network pathway protein structure by wnpx on 2006-05-28 15:49:04 as ** along with 6 people and 1 group jfr lfriedl noano bhaddow edwardmorrissey jiny kdl
  • Kernel methods for predicting protein-protein interactions.
    Bioinformatics, Vol. 21 Suppl 1 (1 June 2005)
    by A Ben-Hur, WS Noble
    posted to 6070 prediction protein proteininteraction proteininteractiondata proteininteractions by wnpx on 2006-02-23 11:44:54 as **
  • Identification of protein complexes by comparative analysis of yeast and bacterial protein interaction data
    (2004), pp. 282-289.
    by Roded Sharan, Trey Ideker, Brian P Kelley, Ron Shamir, Richard M Karp
    posted to protein proteincomplex proteininteraction by wnpx on 2006-01-30 20:05:13 as ** along with 4 people and 2 groups dragonrez okarsligil lfriedl iris_2001 kdl Bioinformatics
  • Genome-scale protein function prediction in yeast Saccharomyces cerevisiae through integrating multiple sources of high-throughput data.
    Pac Symp Biocomput (2005), pp. 471-482.
    by Y Chen, D Xu
    posted to functionprediction protein by wnpx on 2006-01-21 23:15:32 as ** along with 5 people and 2 groups carlk tmmurali okarsligil lfriedl balajis kdl Bioinformatics
  • Whole-proteome prediction of protein function via graph-theoretic analysis of interaction maps.
    Bioinformatics, Vol. 21 Suppl 1 (1 June 2005)
    by E Nabieva, K Jim, A Agarwal, B Chazelle, M Singh
    posted to functionprediction graphtheory protein proteininteractions by wnpx on 2006-01-21 23:09:35 as ** along with 7 people and 2 groups carlk tmmurali okarsligil lfriedl j3xucite jiny Pao-Yang kdl Bioinformatics
  • Protein function prediction via graph kernels.
    Bioinformatics, Vol. 21, No. suppl_1. (1 June 2005)
    by Karsten MM Borgwardt, Cheng, Stefan Schönauer, SVNV Vishwanathan, Alex JJ Smola, Hans-Peter P Kriegel
    posted to classification functionprediction protein svm by wnpx on 2006-01-21 23:08:38 as ** along with 7 people and 4 groups tmmurali okarsligil vavi lfriedl marcius eweaver kt kdl Bioinformatics BioinfoCIPF SGU-CIPF
  • Use of Logic Relationships to Decipher Protein Network Organization
    Science, Vol. 306, No. 5705. (24 December 2004), pp. 2246-2249.
    by Peter M Bowers, Shawn J Cokus, David Eisenberg, Todd O Yeates
    posted to interaction protein proteininteractions by wnpx on 2006-01-21 22:52:04 as ** along with 3 people and 1 group mdimmic lfriedl opheliav kdl
  • Assessing the limits of genomic data integration for predicting protein networks.
    Genome Res, Vol. 15, No. 7. (July 2005), pp. 945-953.
    by LJ Lu, Y Xia, A Paccanaro, H Yu, M Gerstein
    posted to 6070 dataintegration network protein proteininteractions by wnpx on 2006-01-03 06:15:51 as ** along with 13 people and 2 groups phoenixzxl carlk brianb iris_2001 okarsligil lfriedl balajis maryee opheliav mbeautru eukfn grahamc nedwards kdl Bioinformatics
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