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xili03 algorithm [22 articles]

Recent papers added to xili03 library classified by the tag algorithm. You can also see everyone's algorithm.
  • On counting position weight matrix matches in a sequence, with application to discriminative motif finding.
    Bioinformatics, Vol. 22, No. 14. (15 July 2006)
    by S Sinha
    posted to algorithm by xili03 on 2008-07-09 06:03:48 as ** along with 2 people eckart_bindewald samal
  • Effective transcription factor binding site prediction using a combination of optimization, a genetic algorithm and discriminant analysis to capture distant interactions
    BMC Bioinformatics, Vol. 8, No. 1. (2007)
    by Victor Levitsky, Elena Ignatieva, Elena Ananko, Igor Turnaev, Tatyana Merkulova, Nikolay Kolchanov, T Hodgman
    posted to genetic algorithm by xili03 on 2008-04-30 09:04:09 as ** along with 4 people nklee maximilianh yevishere csdhwang
  • Composite Module Analyst: identification of transcription factor binding site combinations using genetic algorithm.
    Nucleic acids research, Vol. 34, No. Web Server issue. (1 July 2006)
    by T Waleev, D Shtokalo, T Konovalova, N Voss, E Cheremushkin, P Stegmaier, O Kel-Margoulis, E Wingender, A Kel
    posted to genetic algorithm by xili03 on 2008-04-29 08:10:02 as **
  • Composite Module Analyst: a fitness-based tool for identification of transcription factor binding site combinations
    Bioinformatics, Vol. 22, No. 10. (15 May 2006), pp. 1190-1197.
    by A Kel, T Konovalova, T Waleev, E Cheremushkin, O Kel-Margoulis, E Wingender
    posted to genetic algorithm by xili03 on 2008-04-29 08:01:34 as **
  • A GA Approach to the Definition of Regulatory Signals in Genomic Sequences
    Genetic and Evolutionary Computation – GECCO 2004 (2004), pp. 380-391.
    by Giancarlo Mauri, Roberto Mosca, Giulio Pavesi
    posted to genetic algorithm by xili03 on 2008-04-29 04:29:24 as **
  • A Clustering Method for Improving the Global Search Capability of Genetic Algorithms
    (2000)
    by Leizer Schnitman, Takashi Yoneyama
    posted to algorithm genetic by xili03 on 2008-04-22 02:00:15 as **
  • Fitness sharing and niching methods revisited
    Evolutionary Computation, IEEE Transactions on, Vol. 2, No. 3. (1998), pp. 97-106.
    by B Sareni, L Krahenbuhl
    posted to algorithm genetic by xili03 on 2008-04-22 00:41:00 as **
  • A self-adaptive mate selection model for genetic programming
    Evolutionary Computation, 2005. The 2005 IEEE Congress on, Vol. 3 (2005), pp. 2707-2714 Vol. 3.
    by R Fry, Smith, AM Tyrrell
    posted to algorithm genetic by xili03 on 2008-04-22 00:40:31 as **
  • Integrated analysis of yeast regulatory sequences for biologically linked clusters of genes.
    Funct Integr Genomics, Vol. 3, No. 3. (July 2003), pp. 125-134.
    by A Sandelin, A Höglund, B Lenhard, WW Wasserman
    posted to algorithm by xili03 on 2008-04-21 03:55:29 as ** along with 2 people aalibes nklee
  • Finding motifs using random projections.
    J Comput Biol, Vol. 9, No. 2. (2002), pp. 225-242.
    by J Buhler, M Tompa
    posted to algorithm by xili03 on 2008-04-08 12:22:20 as ** along with 1 person dquest
  • Finding motifs for insufficient number of sequences with strong binding to transcription facto
    (2004), pp. 125-132.
    by Francis YL Chin, Henry CM Leung, SM Yiu, TW Lam, Roni Rosenfeld, WW Tsang, David K Smith, Y Jiang
    posted to algorithm by xili03 on 2008-04-08 01:36:15 as read
  • notes An algorithm for finding signals of unknown length in DNA sequences.
    Bioinformatics, Vol. 17 Suppl 1 (2001)
    by G Pavesi, G Mauri, G Pesole
    posted to algorithm by xili03 on 2008-04-06 03:11:28 as ** along with 5 people ep161302 dquest xiaobeizhao smiddha nklee
  • Combinatorial approaches to finding subtle signals in DNA sequences.
    Proc Int Conf Intell Syst Mol Biol, Vol. 8 (2000), pp. 269-278.
    by PA Pevzner, SH Sze
    posted to algorithm by xili03 on 2008-03-19 01:54:58 as ** along with 3 people ep161302 dquest lesliehong
  • Evolving core promoter signal motifs
    Evolutionary Computation, 2001. Proceedings of the 2001 Congress on, Vol. 2 (2001), pp. 1162-1169 vol. 2.
    by D Corne, A Meade, R Sibly
    posted to algorithm evolutionary by xili03 on 2008-03-14 03:27:29 as read
  • GAME: detecting cis-regulatory elements using a genetic algorithm
    Bioinformatics, Vol. 22, No. 13. (1 July 2006), pp. 1577-1584.
    by Wei, Zhi, Jensen, T Shane
    posted to algorithm genetic by xili03 on 2008-01-15 03:30:28 as read
  • Motif discovery in upstream sequences of coordinately expressed genes
    Evolutionary Computation, 2003. CEC '03. The 2003 Congress on, Vol. 3 (2003), pp. 1596-1603 Vol.3.
    by M Stine, D Dasgupta, S Mukatira
    posted to algorithm genetic by xili03 on 2008-01-15 03:28:59 as **
  • Identification of weak motifs in multiple biological sequences using genetic algorithm
    (2006), pp. 271-278.
    by Topon K Paul, Hitoshi Iba
    posted to algorithm genetic by xili03 on 2008-01-15 03:25:53 as ***
  • FMGA: finding motifs by genetic algorithm
    Bioinformatics and Bioengineering, 2004. BIBE 2004. Proceedings. Fourth IEEE Symposium on (2004), pp. 459-466.
    by FFM Liu, JJP Tsai, RM Chen, SN Chen, SH Shih
    posted to algorithm genetic by xili03 on 2008-01-15 03:24:09 as read along with 1 person princeindia
  • Discovery, validation, and genetic dissection of transcription factor binding sites by comparative and functional genomics
    Genome Res., Vol. 15, No. 8. (1 August 2005), pp. 1145-1152.
    by Jason Gertz, Linda Riles, Peter Turnbaugh, Su-Wen Ho, Barak A Cohen
    posted to algorithm genetic by xili03 on 2008-01-15 03:22:12 as ** along with 1 person nklee
  • MDGA: motif discovery using a genetic algorithm
    (2005), pp. 447-452.
    by Dongsheng Che, Yinglei Song, Khaled Rasheed
    posted to algorithm genetic by xili03 on 2008-01-15 03:19:45 as read
  • TFBS identification by position- and consensus-led genetic algorithm with local filtering
    (2007), pp. 377-384.
    by Tak-Ming Chan, Kwong-Sak Leung, Kin-Hong Lee
    posted to algorithm genetic by xili03 on 2008-01-15 02:59:10 as read
  • TFBS Identification Based on Genetic Algorithm with Combined Representations and Adaptive Post-processing.
    Bioinformatics (6 December 2007)
    by Tak-Ming M Chan, Kwong-Sak S Leung, Kin-Hong H Lee
    posted to algorithm genetic by xili03 on 2008-01-14 03:05:50 as *** along with 5 people isimpson nklee maximilianh idonaldson csdhwang
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