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yalexeev library [106 articles]

Статьи, недавно добавленные в библиотеку yalexeev .
  • Post-translational modification of barley LTP1b: The lipid adduct lies in the hydrophobic cavity and alters the protein dynamics
    FEBS
    posted to ltp by yalexeev on 2008-09-23 14:40:23 as **
  • Molecular dynamics simulations of biomolecules.
    Nat Struct Biol, Vol. 9, No. 9. (September 2002), pp. 646-652.
    by M Karplus, JA McCammon
    posted to md by yalexeev on 2008-09-04 17:02:04 as ** along with 5 people baaden aqeel simone RamuAnandakrishnan LamBras
  • Targeted Molecular Dynamics Simulations of Protein Unfolding
    J. Phys. Chem. B, Vol. 104, No. 18. (11 May 2000), pp. 4511-4518.
    by P Ferrara, J Apostolakis, A Caflisch
    posted to unfolding by yalexeev on 2008-07-16 11:28:47 as **
  • Acid-induced unfolding kinetics in simulated gastric digestion of proteins
    Regulatory Toxicology and Pharmacology, Vol. 46, No. 1. (October 2006), pp. 93-99.
    by Rod Herman, Yong Gao, Nicholas Storer
    posted to unfolding by yalexeev on 2008-07-16 10:49:35 as **
  • Structure and mechanism of the pepsin-like family of aspartic peptidases.
    Chemical reviews, Vol. 102, No. 12. (December 2002), pp. 4431-4458.
    by BM Dunn
    posted to pepsin by yalexeev on 2008-07-03 10:48:22 as **
  • A residue-specific NMR view of the non-cooperative unfolding of a molten globule
    Nat Struct Mol Biol, Vol. 4, No. 8. (1997), pp. 630-634.
    by Brenda A Schulman, Peter S Kim, Christopher M Dobson, Christina Redfield
    posted to alpha-lactalbumin unfolding by yalexeev on 2008-06-17 12:11:08 as ** along with 1 person rph
  • [alpha]-Lactalbumin forms a compact molten globule in the absence of disulfide bonds
    Nat Struct Mol Biol, Vol. 6, No. 10. (October 1999), pp. 948-952.
    by Christina Redfield, Brenda A Schulman, Michael A Milhollen, Peter S Kim, Christopher M Dobson
    posted to alpha-lactalbumin unfolding by yalexeev on 2008-06-17 12:08:30 as **
  • The 28-111 disulfide bond constrains the alpha-lactalbumin molten globule and weakens its cooperativity of folding.
    Proceedings of the National Academy of Sciences of the United States of America, Vol. 96, No. 20. (28 September 1999), pp. 11283-11287.
    by Y Luo, RL Baldwin
    posted to alpha-lactalbumin by yalexeev on 2008-06-10 13:09:46 as **
  • Structural relatedness of plant food allergens with specific reference to cross-reactive allergens: an in silico analysis.
    The Journal of allergy and clinical immunology, Vol. 115, No. 1. (January 2005), pp. 163-170.
    by JA Jenkins, S Griffiths-Jones, PR Shewry, H Breiteneder, EN Mills
    posted to allergen by yalexeev on 2008-06-04 13:15:14 as **
  • Evolutionary distance from human homologs reflects allergenicity of animal food proteins.
    The Journal of allergy and clinical immunology, Vol. 120, No. 6. (December 2007), pp. 1399-1405.
    by JA Jenkins, H Breiteneder, EN Mills
    posted to allergen by yalexeev on 2008-06-04 13:13:53 as **
  • Managing allergens in food
    (2007)
    by Clare Mills
    posted to allergen by yalexeev on 2008-05-29 16:51:49 as **
  • Plant food allergens
    (2004)
    by Clare Mills
    posted to allergen by yalexeev on 2008-05-29 16:50:24 as **
  • THz time domain spectroscopy of biomolecular conformational modes
    Physics in Medicine and Biology, Vol. 47, No. 21. (2002), pp. 3797-3805.
    by A Markelz, S Whitmire, J Hillebrecht, R Birge
    posted to infrared by yalexeev on 2008-05-07 15:13:17 as **
  • Applications of Terahertz Spectroscopy in Biosystems
    ChemPhysChem, Vol. 8, No. 17. (2007), pp. 2412-2431.
    by David F Plusquellic, Karen Siegrist, Edwin J Heilweil, Okan Esenturk
    posted to infrared by yalexeev on 2008-05-06 15:58:07 as **
  • Electrostatic interactions in the acid denaturation of alpha-lactalbumin determined by NMR.
    Protein science : a publication of the Protein Society, Vol. 7, No. 9. (September 1998), pp. 1930-1938.
    by S Kim, J Baum
    posted to alpha-lactalbumin by yalexeev on 2008-05-01 15:18:35 as **
  • Structure and IR spectrum of phenylalanyl-glycyl-glycine tripetide in the gas-phase: IR/UV experiments, ab initio quantum chemical calculations, and molecular dynamic simulations.
    Chemistry (Weinheim an der Bergstrasse, Germany), Vol. 11, No. 23. (18 November 2005), pp. 6803-6817.
    by D Reha, H Valdés, J Vondrásek, P Hobza, A Abu-Riziq, B Crews, MS de Vries
    posted to infrared by yalexeev on 2008-04-30 12:13:53 as **
  • Conformational Dynamics of Trialanine in Water. 2. Comparison of AMBER, CHARMM, GROMOS, and OPLS Force Fields to NMR and Infrared Experiments
    J. Phys. Chem. B, Vol. 107, No. 21. (29 May 2003), pp. 5064-5073.
    by YG Mu, DS Kosov, G Stock
    posted to infrared by yalexeev on 2008-04-30 10:55:34 as **
  • Molecular dynamics simulations of human &agr;-lactalbumin: Changes to the structural and dynamical properties of the protein at low pH
    Proteins: Structure, Function, and Genetics, Vol. 36, No. 1. (1999), pp. 77-86.
    by Lorna J Smith, Christopher M Dobson, Wilfred F van Gunsteren
    posted to unfolding by yalexeev on 2008-04-23 14:56:44 as **
  • Characterization of the denaturation of human
    by Lorna J Smith, Rachel M Jones, Wilfred F van Gunsteren
    posted to unfolding by yalexeev on 2008-04-23 14:50:11 as **
  • Intrinsic motions along an enzymatic reaction trajectory
    Nature (18 November 2007)
    by Katherine A Henzler-Wildman, Vu Thai, Ming Lei, Maria Ott, Magnus Wolf-Watz, Tim Fenn, Ed Pozharski, Mark A Wilson, Gregory A Petsko, Martin Karplus, Christian G Hübner, Dorothee Kern
    posted to karplus by yalexeev on 2008-04-23 12:24:19 as ** along with 6 people and 1 group aqeel ebeutler cactus sobolevnrm paulschlesinger jlh64 baker-group
  • Acid-Induced Unfolding Mechanism of Recombinant Human Endostatin
    Biochemistry, Vol. 43, No. 9. (9 March 2004), pp. 2550-2557.
    by B Li, X Wu, H Zhou, Q Chen, Y Luo
    posted to unfolding by yalexeev on 2008-04-23 12:09:10 as **
  • Hydrogen Ion Titration Curves of beta-Lactoglobulin
    Journal of American Chemical Society, No. 81. (1959), pp. 5523-5529.
    by Yasuhiko Nozaki, Lyle G Bunville, Charles Tanford
    posted to betalactoglobulin by yalexeev on 2008-04-22 18:15:00 as **
  • Two steps in the transition between the native and acid states of bovine alpha-lactalbumin detected by circular polarization of luminescence: Evidence for a premolten globule state?
    Protein Sci, Vol. 4, No. 11. (1 November 1995), pp. 2319-2326.
    by EE Gussakovsky, E Haas
    posted to alpha-lactalbumin by yalexeev on 2008-04-22 16:44:45 as **
  • The Reversible Transformation of β-Lactoglobulin at pH 7.5
    Journal of American Chemical Society, No. 81. (1959), pp. 4032-4036.
    by Charles Tanford, Lyle G Bunville, Yasuhiko Nozaki
    posted to betalactoglobulin by yalexeev on 2008-04-22 15:47:14 as **
  • Structural Changes Accompanying pH-Induced Dissociation of the Beta-Lactoglobulin Dimer
    Biochemistry, Vol. 39, No. 13. (4 April 2000), pp. 3565-3574.
    by S Uhrinova, MH Smith, GB Jameson, D Uhrin, L Sawyer, PN Barlow
    posted to betalactoglobulin by yalexeev on 2008-04-22 11:02:09 as **
  • Crystal structure of a hypoallergenic isoform of the major birch pollen allergen Bet v 1 and its likely biological function as a plant steroid carrier.
    Journal of molecular biology, Vol. 325, No. 1. (3 January 2003), pp. 123-133.
    by Z Marković-Housley, M Degano, D Lamba, E von Roepenack-Lahaye, S Clemens, M Susani, F Ferreira, O Scheiner, H Breiteneder
    posted to allergen structure by yalexeev on 2008-04-07 15:20:25 as **
  • Protein-protein interactions in actin-myosin binding and structural effects of R405Q mutation: A molecular dynamics study
    Proteins: Structure, Function, and Bioinformatics, Vol. 64, No. 1. (2006), pp. 156-166.
    by Yuemin Liu, Megan Scolari, Wonpil Im, Hyung-June Woo
    posted to computation myosin by yalexeev on 2008-03-24 16:37:30 as **
  • Evolutionarily conserved networks of residues mediate allosteric communication in proteins.
    Nat Struct Biol, Vol. 10, No. 1. (January 2003), pp. 59-69.
    by GM Süel, SW Lockless, MA Wall, R Ranganathan
    posted to allostery by yalexeev on 2008-03-21 17:21:12 as ** along with 15 people and 3 groups lna dimka marcius eckart_bindewald gbart analogAI nirfriedman dgront caporaso choonpeng efge carlescorbi mingzhi weisblum ca3295 biomedical-nlp BioinfoCIPF SGU-CIPF
  • Structural mechanism of the recovery stroke in the myosin molecular motor.
    Proc Natl Acad Sci U S A, Vol. 102, No. 19. (10 May 2005), pp. 6873-6878.
    by S Fischer, B Windshügel, D Horak, KC Holmes, JC Smith
    posted to computation myosin by yalexeev on 2008-03-17 16:25:45 as ** along with 2 people and 2 groups barry shuns structural_bioinformatics Bioinformatics
  • Replica exchange molecular dynamics simulations of amyloid peptide aggregation
    (17 Sep 2004)
    by M Cecchini, F Rao, M Seeber, A Caflisch
    posted to aggregation computation by yalexeev on 2008-03-12 13:51:28 as **
  • A molecular dynamics approach to the structural characterization of amyloid aggregation.
    J Mol Biol, Vol. 357, No. 4. (7 April 2006), pp. 1306-1321.
    by M Cecchini, R Curcio, M Pappalardo, R Melki, A Caflisch
    posted to aggregation computation by yalexeev on 2008-03-12 13:48:07 as ** along with 1 person allmensch
  • Structural Details, Pathways, and Energetics of Unfolding Apomyoglobin
    Journal of Molecular Biology, Vol. 325, No. 3. (January 2003), pp. 555-567.
    by A Onufriev, DA Case, D Bashford
    posted to computation md unfolding by yalexeev on 2008-03-03 14:43:34 as ** along with 1 person saravan
  • The Unfolding Action of GroEL on a Protein Substrate
    Biophys. J., Vol. 87, No. 1. (1 July 2004), pp. 562-573.
    by Arjan van der Vaart, Jianpeng Ma, Martin Karplus
    posted to computation md unfolding by yalexeev on 2008-02-29 15:34:34 as **
  • The protein folding 'speed limit'.
    Curr Opin Struct Biol, Vol. 14, No. 1. (February 2004), pp. 76-88.
    by J Kubelka, J Hofrichter, WA Eaton
    posted to no-tag by yalexeev on 2008-02-26 12:03:28 as ** along with 3 people fjc1 choonpeng superpyrin
  • Titration calculations of foot-and-mouth disease virus capsids and their stabilities as a function of pH
    Journal of Molecular Biology, Vol. 275, No. 2. (16 January 1998), pp. 295-308.
    by Herman W van Vlijmen, Stephen Curry, Michael Schaefer, Martin Karplus
    posted to computation md ph-calculations by yalexeev on 2008-02-21 16:19:39 as **
  • Distantly related sequences in the alpha- and beta-subunits of ATP synthase, myosin, kinases and other ATP-requiring enzymes and a common nucleotide binding fold.
    EMBO J, Vol. 1, No. 8. (1982), pp. 945-951.
    by JE Walker, M Saraste, MJ Runswick, NJ Gay
    posted to binding-site myosin by yalexeev on 2008-02-20 15:19:27 as **
  • The mechanism of the reverse recovery-step, phosphate release, and actin activation of Dictyostelium myosin II.
    J Biol Chem (21 January 2008)
    by Máté Gyimesi, Bálint Kintses, Andrea Bodor, András Perczel, Stefan Fischer, Clive R R Bagshaw, András Málnási-Csizmadia
    posted to adp kinetics myosin by yalexeev on 2008-02-19 16:34:49 as **
  • The Limits of Quantum Computing
    Scientific American (February 2008)
    by Scott Aaronson
    posted to no-tag by yalexeev on 2008-02-19 14:28:37 as **
  • pH-Dependence of Protein Stability: Absolute Electrostatic Free Energy Differences between Conformations
    J. Phys. Chem. B, Vol. 101, No. 9. (27 February 1997), pp. 1663-1683.
    by M Schaefer, M Sommer, M Karplus
    posted to computation md ph-calculations by yalexeev on 2008-02-13 17:27:43 as **
  • Improved Gō-like models demonstrate the robustness of protein folding mechanisms towards non-native interactions.
    J Mol Biol, Vol. 334, No. 2. (21 November 2003), pp. 309-325.
    by J Karanicolas, CL Brooks
    posted to computation go-model md by yalexeev on 2008-02-12 16:37:53 as **
  • The origins of asymmetry in the folding transition states of protein L and protein G.
    Protein Sci, Vol. 11, No. 10. (October 2002), pp. 2351-2361.
    by J Karanicolas, CL Brooks
    posted to computation go-model md by yalexeev on 2008-02-12 16:37:19 as ** along with 2 people choonpeng iantunbridge
  • Atomic structure of scallop myosin subfragment S1 complexed with MgADP: a novel conformation of the myosin head.
    Cell, Vol. 97, No. 4. (14 May 1999), pp. 459-470.
    by A Houdusse, VN Kalabokis, D Himmel, AG Szent-Györgyi, C Cohen
    posted to myosin x-ray by yalexeev on 2008-02-11 16:48:26 as **
  • X-ray structures of the myosin motor domain of Dictyostelium discoideum complexed with MgADP.BeFx and MgADP.AlF4-.
    Biochemistry, Vol. 34, No. 28. (18 July 1995), pp. 8960-8972.
    by AJ Fisher, CA Smith, JB Thoden, R Smith, K Sutoh, HM Holden, I Rayment
    posted to myosin x-ray by yalexeev on 2008-02-11 16:41:57 as ** along with 1 person shuns
  • The structural basis of blebbistatin inhibition and specificity for myosin II
    Nature Structural & Molecular Biology, Vol. 12, No. 4. (06 March 2005), pp. 378-379.
    by John S Allingham, Robert Smith, Ivan Rayment
    posted to myosin x-ray by yalexeev on 2008-02-11 16:29:29 as **
  • Chemistry: Power play : Nature News
    Nature, No. 451. (16 January 2008), pp. 240-243.
    by Brendan Borrell
    posted to computation gpu md by yalexeev on 2008-02-11 12:51:38 as **
  • Prediction of peptides observable by mass spectrometry applied at the experimental set level
    BMC Bioinformatics, Vol. 8, No. Suppl 7. (2007)
    by William Sanders, Susan Bridges, Fiona Mccarthy, Bindu Nanduri, Shane Burgess
    posted to mass-spectrometry by yalexeev on 2008-02-08 15:45:31 as ** along with 1 person jyuh
  • Improved Go-like Models Demonstrate the Robustness of Protein Folding Mechanisms Towards Non-native Interactions
    Journal of Molecular Biology, Vol. 334, No. 2. (21 November 2003), pp. 309-325.
    by John Karanicolas, Charles L Brooks
    posted to folding go-model by yalexeev on 2008-02-08 13:33:15 as **
  • HADDOCK: a protein-protein docking approach based on biochemical or biophysical information.
    J Am Chem Soc, Vol. 125, No. 7. (19 February 2003), pp. 1731-1737.
    by C Dominguez, R Boelens, AM Bonvin
    posted to docking haddock protein-protein by yalexeev on 2008-02-01 11:09:14 as ** along with 6 people betainverse dgruiz bicko bluvsh1 gloria ruvido
  • Docking and scoring protein complexes: CAPRI 3rd Edition
    Proteins: Structure, Function, and Bioinformatics, Vol. 9999, No. 9999. (2007), NA.
    by Marc F Lensink, Raúl Méndez, Shoshana J Wodak
    posted to docking protein-protein by yalexeev on 2008-02-01 11:06:58 as ** along with 8 people and 1 group csrocha bicko chad_davis ruvido cjeans carlescorbi middledomain timg structural_bioinformatics
  • ZDOCK predictions for the CAPRI challenge.
    Proteins, Vol. 52, No. 1. (1 July 2003), pp. 68-73.
    by R Chen, W Tong, J Mintseris, L Li, Z Weng
    posted to docking protein-protein zdock by yalexeev on 2008-02-01 11:01:52 as ** along with 1 person ffranca
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