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yggdrasil library [313 articles]

Статьи, недавно добавленные в библиотеку yggdrasil .
  • An evaluation of GO annotation retrieval for BioCreAtIvE and GOA.
    BMC Bioinformatics, Vol. 6 Suppl 1 (2005)
    by EB Camon, DG Barrell, EC Dimmer, V Lee, M Magrane, J Maslen, D Binns, R Apweiler
    posted to no-tag by yggdrasil on 2008-05-26 17:37:43 as ** along with 4 people and 2 groups yas helliontroy CitoJam adoms T_lab biomedical-nlp
  • TREC 2005 Genomics Track Overview
    (2005)
    by W Hersh, A Cohen, J Yang, RT Bhupatiraju, P Roberts, M Hearst
    posted to no-tag by yggdrasil on 2008-05-26 14:06:45 as ** along with 1 person and 1 group helliontroy biomedical-nlp
  • Assisted Curation: Does Text Mining Really Help?
    (January 2008)
    by Beatrice Alex, Claire Grover, Barry Haddow, Mijail Kabadjov, Ewan Klein, Michael Matthews, Stuart Roebuck, Richard Tobin, Xinglong Wang
    posted to no-tag by yggdrasil on 2008-05-26 10:28:13 as ** along with 1 person and 1 group bhaddow Text Analytics
  • Assessing the accuracy of prediction algorithms for classification: an overview.
    Bioinformatics, Vol. 16, No. 5. (2000), pp. 412-24.
    by P Baldi, S Brunak, Y Chauvin, CA Andersen, H Nielsen
    posted to no-tag by yggdrasil on 2008-05-24 14:14:55 as ** along with 1 person elfar
  • Semantically linking and browsing PubMed abstracts with gene ontology
    BMC Genomics, Vol. 9, No. Suppl 1. (2008)
    by Bhanu Vanteru, Jahangheer Shaik, Mohammed Yeasin
    posted to no-tag by yggdrasil on 2008-05-22 09:02:37 as ** along with 2 people jyuh adoms
  • Learning statistical models for annotating proteins with function information using biomedical text.
    BMC Bioinformatics, Vol. 6 Suppl 1 (2005)
    by S Ray, M Craven
    posted to no-tag by yggdrasil on 2008-05-21 10:54:26 as ** along with 3 people and 2 groups irenas helliontroy bhaddow dbk-lab biomedical-nlp
  • Mining protein function from text using term-based support vector machines.
    BMC Bioinformatics, Vol. 6 Suppl 1 (2005)
    by SB Rice, G Nenadic, BJ Stapley
    posted to no-tag by yggdrasil on 2008-05-20 21:27:14 as ** along with 1 person and 1 group helliontroy biomedical-nlp
  • Protein annotation as term categorization in the gene ontology using word proximity networks.
    BMC Bioinformatics, Vol. 6 Suppl 1 (2005)
    by K Verspoor, J Cohn, C Joslyn, S Mniszewski, A Rechtsteiner, LM Rocha, T Simas
    posted to no-tag by yggdrasil on 2008-05-20 21:26:14 as ** along with 2 people and 1 group helliontroy gaudan biomedical-nlp
  • Automatic recognition of multi-word terms:. the C-value/NC-value method
    International Journal on Digital Libraries, Vol. V3, No. 2. (2000), pp. 115-130.
    by Katerina Frantzi, Sophia Ananiadou, Hideki Mima
    posted to no-tag by yggdrasil on 2008-05-20 21:11:15 as ** along with 3 people bross florianleitner leechuck
  • A sentence sliding window approach to extract protein annotations from biomedical articles.
    BMC Bioinformatics, Vol. 6 Suppl 1 (2005)
    by M Krallinger, M Padron, A Valencia
    posted to no-tag by yggdrasil on 2008-05-20 19:26:41 as ** along with 1 person and 1 group helliontroy biomedical-nlp
  • Evaluation of BioCreAtIvE assessment of task 2.
    BMC Bioinformatics, Vol. 6 Suppl 1 (2005)
    by C Blaschke, EA Leon, M Krallinger, A Valencia
    posted to no-tag by yggdrasil on 2008-05-20 19:02:35 as ** along with 3 people and 2 groups yas helliontroy zlu T_lab biomedical-nlp
  • Data-poor categorization and passage retrieval for Gene Ontology annotation in Swiss-Prot.
    BMC Bioinformatics, Vol. 6 Suppl 1 (2005)
    by F Ehrler, A Geissbühler, A Jimeno, P Ruch
    posted to no-tag by yggdrasil on 2008-05-20 18:59:12 as ** along with 2 people and 2 groups irenas helliontroy dbk-lab biomedical-nlp
  • Extracting functional annotations of proteins based on hybrid text mining approaches.
    (2004)
    by Jung H Chiang, Hsu C Yu
    posted to no-tag by yggdrasil on 2008-05-20 16:45:21 as ** along with 1 person and 1 group caporaso biomedical-nlp
  • GOAnnotator: linking protein GO annotations to evidence text
    Journal of Biomedical Discovery and Collaboration, Vol. 1 (20 December 2006), 19.
    by Francisco M Couto, Mario J Silva, Vivian Lee, Emily Dimmer, Evelyn Camon, Rolf Apweiler, Harald Kirsch, Dietrich Rebholz-Schuhmann
    posted to no-tag by yggdrasil on 2008-05-20 09:50:44 as ** along with 2 people dullhunk clockett
  • Overview of BioCreAtIvE: critical assessment of information extraction for biology.
    BMC Bioinformatics, Vol. 6 Suppl 1 (2005)
    by L Hirschman, A Yeh, C Blaschke, A Valencia
    posted to benchmark by yggdrasil on 2008-05-19 17:59:31 as ** along with 7 people and 2 groups satre yas helliontroy bhaddow johnkork leechuck vlachmore T_lab biomedical-nlp
  • Finding genomic ontology terms in text using evidence content.
    BMC Bioinformatics, Vol. 6 Suppl 1 (2005)
    by FM Couto, MJ Silva, PM Coutinho
    posted to go concept_recognition by yggdrasil on 2008-05-19 17:55:34 as ** along with 4 people and 3 groups irenas oannes helliontroy josepe dbk-lab biomedical-nlp Regulomics_UCHSC
  • A Maximum Entropy Approach to Natural Language Processing
    Computational Linguistics, Vol. 22, No. 1. (1996), pp. 39-71.
    by Adam L Berger, Stephen D Della Pietra, Vincent JD Della Pietra
    posted to me by yggdrasil on 2008-05-16 15:50:35 as ** along with 9 people FabianNe dmolla mafwood anoopsarkar halacsy erikv whym rayzhang ananthrk
  • A stochastic parts program and noun phrase parser for unrestricted text
    (1988), pp. 136-143.
    by Kenneth W Church
    posted to no-tag by yggdrasil on 2008-05-16 13:42:34 as ** along with 1 person and 1 group yoavg NLP
  • Internal and external evidence in the identification and semantic categorization of proper names
    (1996), pp. 21-39.
    by David D Mcdonald
    posted to rules ner by yggdrasil on 2008-05-16 12:56:41 as **
  • Protein structures and information extraction from biological texts: the PASTA system.
    Bioinformatics, Vol. 19, No. 1. (January 2003), pp. 135-143.
    by R Gaizauskas, G Demetriou, PJ Artymiuk, P Willett
    posted to rules machine-learing by yggdrasil on 2008-05-16 11:09:42 as ** along with 3 people and 2 groups irenas caporaso vlachmore dbk-lab biomedical-nlp
  • Detecting Gene Symbols and Names in Biological Texts: A First Step toward Pertinent Information Extraction.
    Genome Inform Ser Workshop Genome Inform, Vol. 9 (1998), pp. 72-80.
    by D Proux, F Rechenmann, L Julliard, V Pillet, B Jacq
    posted to no-tag by yggdrasil on 2008-05-16 10:19:12 as ** along with 1 person and 1 group irenas dbk-lab
  • Using BLAST for identifying gene and protein names in journal articles
    Gene, Vol. 259, No. 1-2. (23 December 2000), pp. 245-252.
    by Michael Krauthammer, Andrey Rzhetsky, Pavel Morozov, Carol Friedman
    posted to sequence ner alignment by yggdrasil on 2008-05-15 10:49:16 as ** along with 4 people and 1 group klo yas bhaddow vlachmore T_lab
  • BioIE: retargetable information extraction and ontological annotation of biological interactions from the literature.
    J Bioinform Comput Biol, Vol. 2, No. 3. (September 2004), pp. 551-568.
    by JJ Kim, JC Park
    posted to no-tag by yggdrasil on 2008-05-15 10:10:16 as ** along with 1 person and 1 group irenas dbk-lab
  • Genescene: An ontology-enhanced integration of linguistic and co-occurrence based relations in biomedical texts: Research Articles
    J. Am. Soc. Inf. Sci. Technol., Vol. 56, No. 5. (March 2005), pp. 457-468.
    by Gondy Leroy, Hsinchun Chen
    posted to recognition concept by yggdrasil on 2008-05-15 09:08:42 as ***** along with 2 people and 2 groups irenas helliontroy dbk-lab biomedical-nlp
  • Text mining and ontologies in biomedicine: making sense of raw text.
    Brief Bioinform, Vol. 6, No. 3. (September 2005), pp. 239-251.
    by I Spasic, S Ananiadou, J McNaught, A Kumar
    posted to no-tag by yggdrasil on 2008-05-15 08:35:55 as ** along with 7 people and 3 groups irenas andytseng yas hpiwowar helliontroy johnkork daniel_schober dbk-lab T_lab biomedical-nlp
  • UIMA: an architectural approach to unstructured information processing in the corporate research environment
    Nat. Lang. Eng., Vol. 10, No. 3-4. (2004), pp. 327-348.
    by David Ferrucci, Adam Lally
    posted to no-tag by yggdrasil on 2008-05-12 13:55:42 as ** along with 1 person zlu
  • Question Answering in Biomedicine
    (2003)
    by Pierre Zweigenbaum
    posted to question_answering file-import-08-05-12 by yggdrasil on 2008-05-12 13:25:22 as **
  • Significantly Improved Prediction of Subcellular Localization by Integrating Text and Protein Sequence Data
    (2006), pp. 16-27.
    by Annette Höglund, Torsten Blum, Scott Brady, Pierre Dönnes, John San Miguel, Matthew Rocheford, Oliver Kohlbacher, Hagit Shatkay
    posted to file-import-08-05-12 by yggdrasil on 2008-05-12 13:09:25 as **
  • Predicting Gene Functions from Text Using a Cross-Species Approach
    (2006), pp. 88-99.
    by Emilia Stoica, Marti A Hearst
    posted to term recognition by yggdrasil on 2008-05-12 13:04:44 as *****
  • Multiple Approaches to Fine-Grained Indexing of the Biomedical Literature.
    (2007), pp. 292-303.
    by Aurélie Névéol, Sonya E Shooshan, Susanne M Humphrey, Thomas C Rindflesch, Alan R Aronson
    edited by Russ B Altman, Keith A Dunker, Lawrence Hunter, Tiffany Murray, Teri E Klein
    posted to term summarization recognition by yggdrasil on 2008-05-12 12:48:38 as ** along with 1 person bundschu
  • Frontiers of biomedical text mining: current progress
    Brief Bioinform (30 October 2007), bbm045.
    by Pierre Zweigenbaum, Dina Demner-Fushman, Hong Yu, Kevin B Cohen
    posted to textming survey by yggdrasil on 2008-05-12 12:22:22 as read along with 7 people and 1 group irenas TheresaNiederberger jyuh yas dullhunk hpiwowar wchapman dbmi-nlp
  • Event extraction from biomedical papers using a full parser.
    Pac Symp Biocomput (2001), pp. 408-419.
    by A Yakushiji, Y Tateisi, Y Miyao, J Tsujii
    posted to no-tag by yggdrasil on 2008-05-10 17:32:33 as ** along with 1 person and 1 group helliontroy biomedical-nlp
  • Recognizing noun phrases in biomedical text: an evaluation of lab prototypes and commercial chunkers
    BMC Bioinformatics, Vol. 7, No. 1. (4 April 2005)
    by J Wermter, J Fluck, J Stroetgen, S Geißler, U Hahn
    edited by U Hahn, A Valencia
    posted to survey chunking by yggdrasil on 2008-05-10 13:28:02 as ** along with 5 people and 4 groups irenas yas dullhunk caporaso kkaiser dbk-lab T_lab biomedical-nlp IEG
  • Text Chunking Using Transformation-Based Learning
    (1995), pp. 82-94.
    by Lance Ramshaw, Mitch Marcus
    edited by David Yarovsky, Kenneth Church
    posted to no-tag by yggdrasil on 2008-05-10 13:11:11 as ** along with 2 people and 1 group yoavg vlachmore NLP
  • Using name-internal and contextual features to classify biological terms.
    J Biomed Inform, Vol. 37, No. 6. (December 2004), pp. 498-511.
    by M Torii, S Kamboj, K Vijay-Shanker
    posted to term recognition by yggdrasil on 2008-05-09 16:52:42 as ** along with 2 people and 1 group irenas johnkork dbk-lab
  • Automatic extraction of acronym-meaning pairs from MEDLINE databases.
    Medinfo, Vol. 10, No. Pt 1. (2001), pp. 371-375.
    by J Pustejovsky, J Castaño, B Cochran, M Kotecki, M Morrell
    posted to no-tag by yggdrasil on 2008-05-09 16:46:14 as ** along with 1 person natsu
  • POSBIOTM-NER: a trainable biomedical named-entity recognition system.
    Bioinformatics (6 April 2005)
    by Yu Song, Eunju Kim, Gary Geunbae G Lee, Byoung-Kee K Yi
    posted to no-tag by yggdrasil on 2008-05-09 12:46:12 as ** along with 1 person and 1 group irenas dbk-lab
  • Automated extraction of information on protein-protein interactions from the biological literature.
    Bioinformatics, Vol. 17, No. 2. (February 2001), pp. 155-161.
    by T Ono, H Hishigaki, A Tanigami, T Takagi
    posted to ner by yggdrasil on 2008-05-09 12:32:13 as ** along with 7 people and 3 groups satre irenas yas blackbart helliontroy zlu bundschu T_lab biomedical-nlp generif_paper
  • Unsupervised Multilingual Sentence Boundary Detection
    Comput. Linguist., Vol. 32, No. 4. (December 2006), pp. 485-525.
    by Tibor Kiss, Jan Strunk
    posted to sentence segmentation by yggdrasil on 2008-05-08 09:29:48 as ** along with 1 person spinaltap526
  • Exploiting Shallow Linguistic Information for Relation Extraction from Biomedical Literature
    (April 2006), pp. 401-408.
    by Claudio Giuliano, Alberto Lavelli, Lorenza Romano
    posted to relation extraction by yggdrasil on 2008-05-07 16:41:43 as ** along with 2 people julial bhaddow
  • Adaptive Multilingual Sentence Boundary Disambiguation
    Computational Linguistics, Vol. 23, No. 2. (1997), pp. 241-267.
    by David D Palmer, Marti A Hearst
    posted to no-tag by yggdrasil on 2008-05-07 11:28:14 as ** along with 1 person 55knots
  • What is a word, what is a sentence? problems of tokenization
    (1994)
    by G Grefenstette, P Tapanainen
    posted to tokenization by yggdrasil on 2008-05-07 11:16:50 as ** along with 1 person and 3 groups carlblesius Blog_and_Wiki_Research mgh-lcs hst-bmi
  • Event-based Information Extraction for the biomedical domain: the Caderige project
    (2004), pp. 43-39.
    by Erick Alphonse, Sophie Aubin, Philippe Bessieres, Gilles Bisson, Thierry Hamon, Sandrine Lagarrigue, Adeline Nazarenko, Alain P Manine, Claire Nedellec, Mohamed, Thierry Poibeau, Davy Weissenbacher
    posted to textmining corpus by yggdrasil on 2008-05-04 21:21:15 as read along with 1 group Text Analytics
  • MedTag: A Collection of Biomedical Annotations
    (June 2005), pp. 32-37.
    by Lawrence H Smith, Lorraine Tanabe, Thomas Rindflesch, John W Wilbur
    posted to textmining corpus by yggdrasil on 2008-05-04 20:55:57 as ***
  • Ontology-based concept similarity in Formal Concept Analysis
    Information Sciences, Vol. 176, No. 18. (22 September 2006), pp. 2624-2641.
    by Anna Formica
    posted to ontology formal-concept-analysis fca concept-similarity by yggdrasil on 2008-04-23 13:02:28 as ** along with 2 people and 1 group rohanar RiccardoAlbertoni ImatiGESemantic
  • Distributed modules for text annotation and IE applied to the biomedical domain
    International Journal of Medical Informatics, Vol. In Press, Corrected Proof
    by Harald Kirsch, Sylvain Gaudan, Dietrich Rebholz-Schuhmann
    posted to textmining ner module java ie component by yggdrasil on 2008-04-23 10:30:26 as ** along with 3 people and 2 groups irenas yas gaudan dbk-lab T_lab
  • Formalization of mouse embryo anatomy.
    Bioinformatics (Oxford, England), Vol. 20, No. 2. (22 January 2004), pp. 259-267.
    by A Burger, D Davidson, R Baldock
    posted to anatomy knowledge mouse ontology representation by yggdrasil on 2008-04-22 11:01:50 as **
  • HyBrow: a prototype system for computer-aided hypothesis evaluation.
    Bioinformatics, Vol. 20 Suppl 1 (4 August 2004)
    by SA Racunas, NH Shah, I Albert, NV Fedoroff
    posted to hypothesis ontology reasoning by yggdrasil on 2008-04-22 09:30:34 as ** along with 4 people and 1 group easr yas sracunas leechuck T_lab
  • Using ontologies linked with geometric models to reason about penetrating injuries.
    Artificial intelligence in medicine, Vol. 37, No. 3. (July 2006), pp. 167-176.
    by DL Rubin, O Dameron, Y Bashir, D Grossman, P Dev, MA Musen
    posted to ontology reasoning by yggdrasil on 2008-04-22 09:08:47 as **
  • Aligning representations of anatomy using lexical and structural methods.
    AMIA Annu Symp Proc (2003), pp. 753-757.
    by S Zhang, O Bodenreider
    posted to no-tag by yggdrasil on 2008-04-22 08:52:13 as ** along with 1 person and 1 group helliontroy biomedical-nlp
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