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zwang evolution [123 articles]

Recent papers added to zwang library classified by the tag evolution. You can also see everyone's evolution.
  • The Ascent of the Abundant: How Mutational Networks Constrain Evolution
    PLoS Comput Biol, Vol. 4, No. 7. (18 July 2008), e1000110.
    by Matthew C Cowperthwaite, Evan P Economo, William R Harcombe, Eric L Miller, Lauren A Meyers
  • Parasites lead to evolution of robustness against gene loss in host signaling networks
    Mol Syst Biol, Vol. 4 (15 July 2008)
    by Marcel Salathe, Orkun S Soyer
    posted to network gene evolution by zwang on 2008-07-22 06:55:12 as ** along with 2 people renatomilani jjray
  • Coordinated evolution of the hepatitis C virus — PNAS
    posted to evolution co-evolution by zwang on 2008-07-16 09:27:03 as **
  • Evolutionary plasticity of genetic interaction networks
    Nat Genet, Vol. 40, No. 4. (April 2008), pp. 390-391.
    by Julia Tischler, Ben Lehner, Andrew G Fraser
  • Data and Theory Point to Mainly Additive Genetic Variance for Complex Traits
    PLoS Genet, Vol. 4, No. 2. (29 February 2008), e1000008.
    by William G Hill, Michael E Goddard, Peter M Visscher
    posted to evolution complex by zwang on 2008-07-01 11:01:10 as **
  • A Maximum Likelihood Method for Detecting Directional Evolution in Protein Sequences and its Application to Influenza A Virus.
    Molecular biology and evolution (29 May 2008)
    by Sergei L L Kosakovsky Pond, Art F Y F Poon, Andrew J J Leigh Brown, Simon D W D Frost
  • Assembly reflects evolution of protein complexes
    Nature (18 June 2008)
    by Emmanuel D Levy, Elisabetta B Erba, Carol V Robinson, Sarah A Teichmann
  • Phylogeny-Aware Gap Placement Prevents Errors in Sequence Alignment and Evolutionary Analysis
    Science, Vol. 320, No. 5883. (20 June 2008), pp. 1632-1635.
    by Ari Loytynoja, Nick Goldman
  • Chemistry & Biology -- Yoshikuni et al.
    posted to evolution by zwang on 2008-06-22 09:48:46 as ** along with 1 person jonsta247
  • Improvisation in evolution of genes and genomes: whose structure is it anyway?
    Current opinion in structural biology (17 May 2008)
    by Boris E E Shakhnovich, Eugene I I Shakhnovich
    posted to genome gene evolution by zwang on 2008-06-16 03:50:16 as ** along with 2 people marck cabbagesofdoom
  • The prokaryotic tree of life: past, present...and future?
    Trends in Ecology & Evolution, Vol. 23, No. 5. (May 2008), pp. 276-281.
    by James O Mcinerney, James A Cotton, Davide Pisani
  • Evolution: A gene is born
    Nature Reviews Genetics, Vol. 9, No. 6., pp. 415-415.
    by Tanita Casci
    posted to yeast gene evolution by zwang on 2008-05-20 15:52:22 as **** along with 1 person cabbagesofdoom
  • Design of protein function leaps by directed domain interface evolution
    Proceedings of the National Academy of Sciences (29 April 2008), 0801097105.
    by Jin Huang, Akiko Koide, Koki Makabe, Shohei Koide
  • Protein Design by Directed Evolution
    Annual Review of Biophysics, Vol. 37, No. 1. (2008), pp. 153-173.
    by Christian Jackel, Peter Kast, Donald Hilvert
    posted to protein evolution by zwang on 2008-05-08 09:50:27 as **** along with 1 person phoenixzxl
  • From Genotype to Phenotype: Systems Biology Meets Natural Variation
    Science, Vol. 320, No. 5875. (25 April 2008), pp. 495-497.
    by Philip N Benfey, Thomas Mitchell-Olds
  • Calculating Bootstrap Probabilities of Phylogeny Using Multilocus Sequence Data
    Mol Biol Evol, Vol. 25, No. 5. (1 May 2008), pp. 960-971.
    by Tae-Kun Seo
    posted to bootstrap evolution phylogeny sequence by zwang on 2008-04-15 05:10:40 as ** along with 1 person adacier
  • Worldwide Human Relationships Inferred from Genome-Wide Patterns of Variation
    Science, Vol. 319, No. 5866. (22 February 2008), pp. 1100-1104.
    by Jun Z Li, Devin M Absher, Hua Tang, Audrey M Southwick, Amanda M Casto, Sohini Ramachandran, Howard M Cann, Gregory S Barsh, Marcus Feldman, Luigi L Cavalli-Sforza, Richard M Myers
  • Direct Visualization of Horizontal Gene Transfer
    Science, Vol. 319, No. 5869. (14 March 2008), pp. 1533-1536.
    by Ana Babic, Ariel B Lindner, Marin Vulic, Eric J Stewart, Miroslav Radman
    posted to evolution hgt by zwang on 2008-04-12 13:29:57 as ** along with 3 people madhadron niallhaslam melting
  • Simulating DNA coding sequence evolution with EvolveAGene 3
    Mol Biol Evol (12 January 2008), msn008.
    by Barry G Hall
  • Detecting evolutionary relationships across existing fold space, using sequence order-independent profile-profile alignments
    Proceedings of the National Academy of Sciences, Vol. 105, No. 14. (8 April 2008), pp. 5441-5446.
    by Lei Xie, Philip E Bourne
  • Evolution of a Core Gene Network for Skeletogenesis in Chordates
    posted to evolution gene network by zwang on 2008-03-31 10:03:51 as **
  • Transcription Factor Substitution during the Evolution of Fungal Ribosome Regulation
    Molecular Cell, Vol. 29, No. 5. (14 March 2008), pp. 552-562.
    by Herve Hogues, Hugo Lavoie, Adnane Sellam, Maria Mangos, Terry Roemer, Enrico Purisima, Andre Nantel, Malcolm Whiteway
  • The evolution of human influenza A viruses from 1999 to 2006 - a complete genome study
    Virology Journal, Vol. 5 (07 March 2008), 40.
    by Karoline Bragstad, Lars P Nielsen, Anders Fomsgaard
    posted to evolution genome influenza virus by zwang on 2008-03-20 13:25:30 as **
  • PLoS Computational Biology: Evolutionary Patterns in the Sequence and Structure of Transfer RNA: Early Origins of Archaea and Viruses
    posted to archaea evolution rna sequence structure virus by zwang on 2008-03-20 13:24:28 as **
  • Rates of evolutionary change in viruses: patterns and determinants
    Nature Reviews Genetics, Vol. 9, No. 4. (04 March 2008), pp. 267-276.
    by Siobain Duffy, Laura A Shackelton, Edward C Holmes
    posted to evolution virus by zwang on 2008-03-20 13:02:43 as **
  • BLOSUM62 miscalculations improve search performance
    Nature Biotechnology, Vol. 26, No. 3., pp. 274-275.
    by Mark P Styczynski, Kyle L Jensen, Isidore Rigoutsos, Gregory Stephanopoulos
    posted to evolution by zwang on 2008-03-19 14:27:28 as ** along with 4 people bpcusack chad_davis dullhunk ptrobajo
  • The structure of protein evolution and the evolution of protein structure
    Current Opinion in Structural Biology, Vol. In Press, Corrected Proof
    by Richard A Goldstein
    posted to evolution protein structure by zwang on 2008-03-11 01:11:59 as *** along with 2 people bpb cmzmasek
  • Selection to minimise noise in living systems and its implications for the evolution of gene expression
    Mol Syst Biol, Vol. 4 (4 March 2008)
    by Ben Lehner
  • Evolution of Complex Modular Biological Networks
    posted to complex evolution network by zwang on 2008-03-03 04:36:53 as ****
  • Evolution of protein domain promiscuity in eukaryotes
    Genome Res. (29 January 2008), gr.6943508.
    by Malay K Basu, Liran Carmel, Igor B Rogozin, Eugene V Koonin
  • Evolution of Cell Recognition by Viruses
    Science, Vol. 292, No. 5519. (11 May 2001), pp. 1102-1105.
    by Eric Baranowski, Carmen M Ruiz-Jarabo, Esteban Domingo
    posted to evolution hostspecialization virus by zwang on 2008-02-26 06:15:03 as **
  • Toll-like receptors — taking an evolutionary approach
    Nature Reviews Genetics, Vol. 9, No. 3., pp. 165-178.
    by François Leulier, Bruno Lemaitre
    posted to evolution immunity tlr by zwang on 2008-02-19 01:10:15 as *** along with 2 people emmahe asddd
  • The evolutionary dynamics of the Saccharomyces cerevisiae protein interaction network after duplication
    Proceedings of the National Academy of Sciences (16 January 2008), 0707293105.
    by Aviva Presser, Michael B Elowitz, Manolis Kellis, Roy Kishony
  • Functional evolution of the p53 regulatory network through its target response elements
    Proceedings of the National Academy of Sciences (10 January 2008), 0704694105.
    by Anil G Jegga, Alberto Inga, Daniel Menendez, Bruce J Aronow, Michael A Resnick
  • On the relation between promoter divergence and gene expression evolution
    Mol Syst Biol, Vol. 4 (15 January 2008)
    by Itay Tirosh, Adina Weinberger, Dana Bezalel, Mark Kaganovich, Naama Barkai
  • Networks of genomic co-occurrence capture characteristics of human influenza A (H3N2) evolution
    Genome Res. (21 November 2007), gr.6969007.
    by Xiangjun Du, Zhuo Wang, Aiping Wu, Lin Song, Yang Cao, Haiying Hang, Taijiao Jiang
  • Life-history traits drive the evolutionary rates of mammalian coding and noncoding genomic elements
    Proceedings of the National Academy of Sciences (11 December 2007), 0705658104.
    by Sergey I Nikolaev, Juan I Montoya-Burgos, Konstantin Popadin, Leila Parand, Elliott H Margulies, National, Stylianos E Antonarakis
  • A Comprehensive Phylogeny of Beetles Reveals the Evolutionary Origins of a Superradiation
    Science, Vol. 318, No. 5858. (21 December 2007), pp. 1913-1916.
    by Toby Hunt, Johannes Bergsten, Zuzana Levkanicova, Anna Papadopoulou, Oliver S John, Ruth Wild, Peter M Hammond, Dirk Ahrens, Michael Balke, Michael S Caterino, Jesus Gomez-Zurita, Ignacio Ribera, Timothy G Barraclough, Milada Bocakova, Ladislav Bocak, Alfried P Vogler
    posted to evolution phylogeny by zwang on 2007-12-21 09:47:02 as *** along with 2 people dinnes youdon
  • Is evolvability evolvable?
    Nat Rev Genet (4 December 2007)
    by Massimo Pigliucci
  • The Hill–Robertson effect: evolutionary consequences of weak selection and linkage in finite populations
    Heredity, Vol. aop, No. current.
    by JM Comeron, A Williford, RM Kliman
    posted to evolution selection sequence by zwang on 2007-12-19 13:22:00 as *
  • Orthology and Functional Conservation in Eukaryotes
    Annual Review of Genetics, Vol. 41, No. 1., 465.
    posted to eukaryota evolution ortholog by zwang on 2007-12-17 07:02:02 as ***
  • MHC, TSP, and the Origin of Species: From Immunogenetics to Evolutionary Genetics
    Annual Review of Genetics, Vol. 41, No. 1., 281.
    posted to evolution genetics immunity mhc by zwang on 2007-12-17 07:00:19 as **
  • DNA Transposons and the Evolution of Eukaryotic Genomes
    Annual Review of Genetics, Vol. 41, No. 1., 331.
    posted to eukaryota evolution genome by zwang on 2007-12-17 06:18:59 as ***
  • Protein engineers turned evolutionists
    Nat Meth, Vol. 4, No. 12. (December 2007), pp. 991-994.
    by Sergio G Peisajovich, Dan S Tawfik
    posted to evolution protein by zwang on 2007-12-10 05:07:01 as ** along with 1 person cjeans
  • Dissecting protein structure and function using directed evolution
    Nat Meth, Vol. 4, No. 12. (December 2007), pp. 995-997.
    by Courtney M Yuen, David R Liu
    posted to evolution function protein structure by zwang on 2007-12-10 05:04:21 as *** along with 1 person cjeans
  • An Evolutionary-Network Model Reveals Stratified Interactions in the V3 Loop of the HIV-1 Envelope
    PLoS Computational Biology, Vol. 3, No. 11. (1 November 2007), e231.
    by Art F Poon, Fraser I Lewis, Sergei L Pond, Simon D Frost
    posted to evolution interaction modeling network protein by zwang on 2007-12-10 04:40:29 as **** along with 1 person gokhan
  • Using Likelihood-Free Inference to Compare Evolutionary Dynamics of the Protein Networks of H. pylori and P. falciparum
    PLoS Computational Biology, Vol. 3, No. 11. (1 November 2007), e230.
    by Oliver Ratmann, Ole Jørgensen, Trevor Hinkley, Michael Stumpf, Sylvia Richardson, Carsten Wiuf
  • Molecular Basis for Evolving Modularity in the Yeast Protein Interaction Network
    PLoS Computational Biology, Vol. 3, No. 11. (1 November 2007), e226.
    by Ariel Fernández
  • Plant-Animal Mutualistic Networks: The Architecture of Biodiversity
    Annual Review of Ecology, Evolution, and Systematics, Vol. 38, No. 1., 567.
    posted to architecture diversity evolution network phylogeny by zwang on 2007-12-08 09:01:17 as ***
  • Evolutionary plasticity of developmental gene regulatory network architecture
    Proceedings of the National Academy of Sciences (27 November 2007), 0709994104.
    by Veronica F Hinman, Eric H Davidson
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