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zwang modeling [18 articles]

Recent papers added to zwang library classified by the tag modeling. You can also see everyone's modeling.
  • The Ascent of the Abundant: How Mutational Networks Constrain Evolution
    PLoS Comput Biol, Vol. 4, No. 7. (18 July 2008), e1000110.
    by Matthew C Cowperthwaite, Evan P Economo, William R Harcombe, Eric L Miller, Lauren A Meyers
    posted to rna network mutation modeling evolution by zwang on 2008-07-22 06:59:06 as ** along with 3 people friendpine djkt Ema
  • A generative, probabilistic model of local protein structure
    Proceedings of the National Academy of Sciences, Vol. 105, No. 26. (1 July 2008), pp. 8932-8937.
    by Wouter Boomsma, Kanti V Mardia, Charles C Taylor, Jesper Ferkinghoff-Borg, Anders Krogh, Thomas Hamelryck
    posted to structure protein modeling by zwang on 2008-07-02 11:49:14 as * along with 3 people mijam apaydin biehl
  • Mathematical modeling of pathogenicity of Cryptococcus neoformans
    Mol Syst Biol, Vol. 4 (15 April 2008)
    by Jacqueline Garcia, John Shea, Fernando Alvarez-Vasquez, Asfia Qureshi, Chiara Luberto, Eberhard O Voit, Maurizio Del Poeta
    posted to modeling mathematic by zwang on 2008-06-13 12:18:14 as **
  • Estimating dynamic models for gene regulation networks
    Bioinformatics (27 May 2008), btn246.
    by Jiguo Cao, Hongyu Zhao
    posted to regulation network modeling gene dynamics by zwang on 2008-06-03 04:00:45 as **
  • An Evolutionary-Network Model Reveals Stratified Interactions in the V3 Loop of the HIV-1 Envelope
    PLoS Computational Biology, Vol. 3, No. 11. (1 November 2007), e231.
    by Art F Poon, Fraser I Lewis, Sergei L Pond, Simon D Frost
    posted to evolution interaction modeling network protein by zwang on 2007-12-10 04:40:29 as **** along with 1 person gokhan
  • MORPH: Probabilistic Alignment Combined with Hidden Markov Models of cis-Regulatory Modules
    PLoS Computational Biology, Vol. 3, No. 11. (1 November 2007), e216.
    by Saurabh Sinha, Xin He
    posted to alignment hmm modeling module regulatory by zwang on 2007-12-10 04:29:31 as *** along with 7 people and 2 groups ana dpollard cjeans maximilianh hpaces Ema uwe EisenLab cis-regulatory-evolution
  • Network modeling links breast cancer susceptibility and centrosome dysfunction
    posted to modeling network by zwang on 2007-12-10 04:11:37 as **
  • A modular network model of aging
    Mol Syst Biol, Vol. 3 (4 December 2007)
    by Huiling Xue, Bo Xian, Dong Dong, Kai Xia, Shanshan Zhu, Zhongnan Zhang, Lei Hou, Qingpeng Zhang, Yi Zhang, Jing-Dong J Han
    posted to modeling network by zwang on 2007-12-05 10:50:12 as ** along with 8 people tmmurali muraken grahamc cjeans biehl mingzhi renatomilani dap5087
  • Evolutionary models for formation of network motifs and modularity in the Saccharomyces transcription factor network.
    PLoS Comput Biol, Vol. 3, No. 10. (26 October 2007), pp. 1993-2002.
    by JJ Ward, JM Thornton
    posted to evolution modeling motif network transcription yeast by zwang on 2007-11-20 08:52:20 as ** along with 2 people cabbagezs grottenolm
  • From Pathways Databases to Network Models of Switching Behavior
    PLoS Computational Biology, Vol. 3, No. 9. (1 September 2007), e152.
    by Baltazar D Aguda, Andrew B Goryachev
    posted to database modeling network pathway by zwang on 2007-11-02 08:00:02 as ** along with 3 people bayesian julius Ema
  • Simulating replica exchange simulations of protein folding with a kinetic network model
    Proceedings of the National Academy of Sciences, Vol. 104, No. 39. (25 September 2007), pp. 15340-15345.
    by Weihua Zheng, Michael Andrec, Emilio Gallicchio, Ronald M Levy
    posted to folding modeling network protein by zwang on 2007-11-01 02:13:25 as **
  • The Functional Genomics Experiment model (FuGE): an extensible framework for standards in functional genomics
    Nat Biotech, Vol. 25, No. 10. (October 2007), pp. 1127-1133.
    by Andrew R Jones, Michael Miller, Ruedi Aebersold, Rolf Apweiler, Catherine A Ball, Alvis Brazma, James Degreef, Nigel Hardy, Henning Hermjakob, Simon J Hubbard, Peter Hussey, Mark Igra, Helen Jenkins, Randall K Julian, Kent Laursen, Stephen G Oliver, Norman W Paton, Susanna-Assunta Sansone, Ugis Sarkans, Christian J Stoeckert, Chris F Taylor, Patricia L Whetzel, Joseph A White, Paul Spellman, Angel Pizarro
    posted to function genome insilico modeling by zwang on 2007-10-11 17:03:39 as ** along with 3 people alanrw jyuh jfr
  • Ensemble modeling for analysis of cell signaling dynamics
    Nature Biotechnology, Vol. 25, No. 9. (10 September 2007), pp. 1001-1006.
    by Lars Kuepfer, Matthias Peter, Uwe Sauer, Jörg Stelling
    posted to dynamics modeling by zwang on 2007-09-14 04:59:00 as **
  • New models of collaboration in genome-wide association studies: the Genetic Association Information Network
    Nat Genet, Vol. 39, No. 9. (2007), pp. 1045-1051.
    posted to genetic genome-wide modeling network by zwang on 2007-09-05 01:53:35 as * along with 3 people jyuh hpiwowar cabbagezs
  • On State-Space Reduction in Multi-Strain Pathogen Models, with an Application to Antigenic Drift in Influenza A
    PLoS Computational Biology, Vol. 3, No. 8. (1 August 2007), e159.
    by Sergey Kryazhimskiy, Ulf Dieckmann, Simon A Levin, Jonathan Dushoff
    posted to influenza modeling by zwang on 2007-09-03 01:53:41 as * along with 1 person bpb
  • Network-Based Analysis of Affected Biological Processes in Type 2 Diabetes Models
    PLoS Genetics, Vol. 3, No. 6. (1 June 2007), e96.
    by Manway Liu, Arthur Liberzon, Sek W Kong, Weil R Lai, Peter J Park, Isaac S Kohane, Simon Kasif
    posted to modeling network by zwang on 2007-08-29 02:18:26 as * along with 4 people chrisamiller tmmurali ajgentles cabbagezs
  • A First-Principles Model of Early Evolution: Emergence of Gene Families, Species, and Preferred Protein Folds
    PLoS Computational Biology, Vol. 3, No. 7. (1 July 2007), e139.
    by Konstantin B Zeldovich, Peiqiu Chen, Boris E Shakhnovich, Eugene I Shakhnovich
    posted to evolution folding gene modeling protein specy by zwang on 2007-08-28 07:39:34 as ** along with 6 people and 1 group BioNica grahamc cjeans Jporci farhat biinins ParkinsonLab_at_MaRS
  • Biology by numbers: mathematical modelling in developmental biology
    Nat Rev Genet, Vol. 8, No. 5. (May 2007), pp. 331-340.
    by Claire J Tomlin, Jeffrey D Axelrod
    posted to mathematic modeling by zwang on 2007-04-24 15:56:43 as ** along with 1 group Bioinformatics
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