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zwang sequence [36 articles]

Recent papers added to zwang library classified by the tag sequence. You can also see everyone's sequence.
  • A Maximum Likelihood Method for Detecting Directional Evolution in Protein Sequences and its Application to Influenza A Virus.
    Molecular biology and evolution (29 May 2008)
    by Sergei L L Kosakovsky Pond, Art F Y F Poon, Andrew J J Leigh Brown, Simon D W D Frost
    posted to sequence protein evolution by zwang on 2008-06-27 03:55:48 as ** along with 1 person and 1 group stajich Berkeley Mycology
  • Multiple protein sequence alignment
    Current Opinion in Structural Biology, Vol. In Press, Corrected Proof
    by Jimin Pei
    posted to sequence alignment by zwang on 2008-06-16 03:49:58 as ** along with 4 people and 1 group sobolevnrm marck paulschlesinger TOchi baker-group
  • Calculating Bootstrap Probabilities of Phylogeny Using Multilocus Sequence Data
    Mol Biol Evol, Vol. 25, No. 5. (1 May 2008), pp. 960-971.
    by Tae-Kun Seo
    posted to bootstrap evolution phylogeny sequence by zwang on 2008-04-15 05:10:40 as ** along with 1 person adacier
  • Complete Chemical Synthesis, Assembly, and Cloning of a Mycoplasma genitalium Genome
    Science (24 January 2008), 1151721.
    by Daniel G Gibson, Gwynedd A Benders, Cynthia Andrews-Pfannkoch, Evgeniya A Denisova, Holly Baden-Tillson, Jayshree Zaveri, Timothy B Stockwell, Anushka Brownley, David W Thomas, Mikkel A Algire, Chuck Merryman, Lei Young, Vladimir N Noskov, John I Glass, Craig J Venter, Clyde A Hutchison, Hamilton O Smith
    posted to assembly genome sequence by zwang on 2008-04-12 13:30:43 as ** along with 8 people austin operon neveaire grahamc GeeSharpMinor lisa1 renatomilani kevinchannon
  • Simulating DNA coding sequence evolution with EvolveAGene 3
    Mol Biol Evol (12 January 2008), msn008.
    by Barry G Hall
    posted to dna evolution sequence simulation by zwang on 2008-04-10 11:24:26 as *** along with 4 people adacier operon aprasad friendpine
  • Detecting evolutionary relationships across existing fold space, using sequence order-independent profile-profile alignments
    Proceedings of the National Academy of Sciences, Vol. 105, No. 14. (8 April 2008), pp. 5441-5446.
    by Lei Xie, Philip E Bourne
    posted to alignment evolution profile sequence structure by zwang on 2008-04-09 03:58:23 as ** along with 1 person and 1 group sobolevnrm baker-group
  • Single-Molecule DNA Sequencing of a Viral Genome
    Science, Vol. 320, No. 5872. (4 April 2008), pp. 106-109.
    by Timothy D Harris, Phillip R Buzby, Hazen Babcock, Eric Beer, Jayson Bowers, Ido Braslavsky, Marie Causey, Jennifer Colonell, James Dimeo, William J Efcavitch, Eldar Giladi, Jaime Gill, John Healy, Mirna Jarosz, Dan Lapen, Keith Moulton, Stephen R Quake, Kathleen Steinmann, Edward Thayer, Anastasia Tyurina, Rebecca Ward, Howard Weiss, Zheng Xie
    posted to dna genome sequence virus by zwang on 2008-04-07 15:57:43 as ** along with 14 people and 3 groups jyuh vmarshal ilyaf austin operon dchughes samjlord neils cabbagezs kinestetika benlin caseybrown kjglennie melting moernerlab Microbial-Ecology microbiology_nijmegen
  • PLoS Computational Biology: Evolutionary Patterns in the Sequence and Structure of Transfer RNA: Early Origins of Archaea and Viruses
    posted to archaea evolution rna sequence structure virus by zwang on 2008-03-20 13:24:28 as **
  • Approaches to comparative sequence analysis: towards a functional view of vertebrate genomes
    Nat Rev Genet, Vol. 9, No. 4. (April 2008), pp. 303-313.
    by Elliott H Margulies, Ewan Birney
    posted to comparativegenomics function genome sequence by zwang on 2008-03-20 13:01:59 as ** along with 5 people natstreet jyuh mingzhi phoenixzxl ptrobajo
  • The MC-Fold and MC-Sym pipeline infers RNA structure from sequence data
    Nature, Vol. 452, No. 7183., pp. 51-55.
    by Marc Parisien, François Major
    posted to prediction rna sequence structure by zwang on 2008-03-07 02:48:26 as *** along with 3 people reyez austin elfar
  • A fast structural multiple alignment method for long RNA sequences
    BMC Bioinformatics, Vol. 9 (23 January 2008), 33.
    by Yasuo Tabei, Hisanori Kiryu, Taishin Kin, Kiyoshi Asai
    posted to alignment rna sequence structure by zwang on 2008-02-24 13:44:59 as ***** along with 1 person mtagaya
  • Genome instability: a mechanistic view of its causes and consequences.
    Nat Rev Genet (29 January 2008)
    by Andrés Aguilera, Belén Gómez-González
    posted to genome mutation sequence by zwang on 2008-02-19 01:22:05 as **
  • Alignment Uncertainty and Genomic Analysis
    Science, Vol. 319, No. 5862. (25 January 2008), pp. 473-476.
    by Karen M Wong, Marc A Suchard, John P Huelsenbeck
    posted to alignment genome sequence by zwang on 2008-02-18 11:09:28 as ** along with 24 people and 2 groups bpcusack pradiptaray jdelcampo timflutre gracio adacier jyuh bpb aprasad dayjm dpollard tny djkt cjeans lisa1 cactus biomcgary lilou kinestetika dandaman gjuggler renatomilani mclarenv youdon EisenLab microbiology_nijmegen
  • Rapid selection of accessible and cleavable sites in RNA by Escherichia coli RNase P and random external guide sequences
    Proceedings of the National Academy of Sciences (8 February 2008), 0711977105.
    by Eirik W Lundblad, Gaoping Xiao, Jae-Hyeong Ko, Sidney Altman
    posted to disease ecoli rna rnasep selection sequence by zwang on 2008-02-17 10:56:28 as **** along with 1 person austin
  • Accurate prediction of protein-protein interactions from sequence alignments using a Bayesian method
    Mol Syst Biol, Vol. 4 (12 February 2008)
    by Lukas Burger, Erik van Nimwegen
    posted to alignment bayesian interaction prediction protein sequence by zwang on 2008-02-17 10:10:43 as **** along with 10 people pansapiens kengg grahamc laughcry biomcgary cabbagezs roys cdeane gjuggler phoenixzxl
  • The Hill–Robertson effect: evolutionary consequences of weak selection and linkage in finite populations
    Heredity, Vol. aop, No. current.
    by JM Comeron, A Williford, RM Kliman
    posted to evolution selection sequence by zwang on 2007-12-19 13:22:00 as *
  • Biclustering As A Method For RNA Local Multiple Sequence Alignment
    Bioinformatics (6 October 2007), btm485.
    by Shu Wang, Robin R Gutell, Daniel P Miranker
    posted to alignment clustering rna sequence by zwang on 2007-12-10 03:49:41 as ** along with 1 person cjeans
  • Predicting protein function from sequence and structure
    Nat Rev Mol Cell Biol, Vol. 8, No. 12. (December 2007), pp. 995-1005.
    by David Lee, Oliver Redfern, Christine Orengo
    posted to function prediction protein review sequence structure by zwang on 2007-12-08 08:55:16 as *** along with 8 people kluck skhadar neils cjeans Evangelia hpaces Ema renatomilani
  • Complete genome sequence of the myxobacterium Sorangium cellulosum
    Nature Biotechnology, Vol. 25, No. 11. (28 October 2007), pp. 1281-1289.
    by Susanne Schneiker, Olena Perlova, Olaf Kaiser, Klaus Gerth, Aysel Alici, Matthias O Altmeyer, Daniela Bartels, Thomas Bekel, Stefan Beyer, Edna Bode, Helge B Bode, Christoph J Bolten, Jomuna V Choudhuri, Sabrina Doss, Yasser A Elnakady, Bettina Frank, Lars Gaigalat, Alexander Goesmann, Carolin Groeger, Frank Gross, Lars Jelsbak, Lotte Jelsbak, Jörn Kalinowski, Carsten Kegler, Tina Knauber, Sebastian Konietzny, Maren Kopp, Lutz Krause, Daniel Krug, Bukhard Linke, Taifo Mahmud, Rosa Martinez-Arias, Alice C Mchardy, Michelle Merai, Folker Meyer, Sascha Mormann, Jose Muñoz-Dorado, Juana Perez, Silke Pradella, Shwan Rachid, Günter Raddatz, Frank Rosenau, Christian Rückert, Florenz Sasse, Maren Scharfe, Stephan C Schuster, Garret Suen, Anke Treuner-Lange, Gregory J Velicer, Frank-Jörg Vorhölter, Kira J Weissman, Roy D Welch, Silke C Wenzel, David E Whitworth, Susanne Wilhelm, Christoph Wittmann, Helmut Blöcker, Alfred Pühler, Rolf Müller
    posted to genome sequence by zwang on 2007-11-09 08:44:44 as * along with 3 people and 1 group neils blobbybirdman kroos Myxo group
  • Mind the Gaps: Evidence of Bias in Estimates of Multiple Sequence Alignments.
    Mol Biol Evol (20 August 2007)
    by Tanya Golubchik, Michael J J Wise, Simon Easteal, Lars S S Jermiin
    posted to alignment sequence by zwang on 2007-11-07 07:45:42 as ** along with 3 people caseybrown lilou dandaman
  • Organization and Evolution of Primate Centromeric DNA from Whole-Genome Shotgun Sequence Data
    PLoS Computational Biology, Vol. 3, No. 9. (1 September 2007), e181.
    by Can Alkan, Mario Ventura, Nicoletta Archidiacono, Mariano Rocchi, Cenk S Sahinalp, Evan E Eichler
    posted to evolution genome sequence by zwang on 2007-11-02 08:09:50 as ** along with 1 person and 1 group hpaces Bioinformatics
  • Structure-Templated Predictions of Novel Protein Interactions from Sequence Information
    PLoS Computational Biology, Vol. 3, No. 9. (1 September 2007), e182.
    by Doron Betel, Kevin E Breitkreuz, Ruth Isserlin, Danielle Dewar-Darch, Mike Tyers, Christopher W Hogue
    posted to interaction prediction protein sequence structure by zwang on 2007-11-02 08:05:43 as *** along with 3 people bicko chad_davis dquest
  • Coevolution of a Homing Endonuclease and Its Host Target Sequence
    Journal of Molecular Biology, Vol. 372, No. 5. (5 October 2007), pp. 1305-1319.
    by Michelle Scalley-Kim, Audrey Mcconnell-Smith, Barry L Stoddard
    posted to co-evolution protein sequence by zwang on 2007-11-01 07:33:43 as **
  • Accuracy of structure-based sequence alignments of automatic methods
    BMC Bioinformatics, Vol. 8 (20 September 2007), 355.
    by Changhoon Kim, Byungkook Lee
    posted to accuracy algorithm alignment sequence structure by zwang on 2007-11-01 07:29:02 as *** along with 3 people rabio dimka chad_davis
  • Computation and Analysis of Genomic Multi-Sequence Alignments
    Annual Review of Genomics and Human Genetics, Vol. 8, No. 1., 193.
    posted to algorithm alignment genome sequence by zwang on 2007-10-24 04:07:01 as **
  • Repetitive Sequences in Complex Genomes: Structure and Evolution
    Annual Review of Genomics and Human Genetics, Vol. 8, No. 1., 241.
    posted to evolution genome sequence structure by zwang on 2007-10-24 04:05:39 as ***
  • Structure-Templated Predictions of Novel Protein Interactions from Sequence Information
    PLoS Computational Biology, Vol. 3, No. 9. (1 September 2007), e182.
    by Doron Betel, Kevin E Breitkreuz, Ruth Isserlin, Danielle Dewar-Darch, Mike Tyers, Christopher W Hogue
    posted to interaction prediction protein sequence structure by zwang on 2007-10-22 05:11:20 as **** along with 2 people winterschlaefer cjeans
  • Systematic Identification of cis-Regulatory Sequences Active in Mouse and Human Embryonic Stem Cells
    PLoS Genetics, Vol. 3, No. 8. (1 August 2007), e145.
    by Marica Grskovic, Christina Chaivorapol, Alexandre Gaspar-Maia, Hao Li, Miguel Ramalho-Santos
    posted to human motif prediction regulatory sequence systematic by zwang on 2007-09-03 04:40:58 as **
  • Recent Evolutions of Multiple Sequence Alignment Algorithms
    PLoS Computational Biology, Vol. 3, No. 8. (1 August 2007), e123.
    by Cédric Notredame
    posted to algorithm alignment evolution sequence by zwang on 2007-09-01 17:08:49 as ** along with 9 people and 2 groups smbe2008 mdimmic rvosa timflutre stajich cabbagezs groepl yoanjacquemin marti Bioinformatics FAB-lab
  • LINKER: a program to generate linker sequences for fusion proteins
    Protein Eng., Vol. 13, No. 5. (1 May 2000), pp. 309-312.
    by Chiquito J Crasto, Jin-An Feng
    posted to linker protein sequence by zwang on 2007-08-30 05:25:33 as **
  • Bioinformatic Servers
    posted to linker protein sequence by zwang on 2007-08-30 05:24:58 as ***
  • Protein-Protein Interaction Hotspots Carved into Sequences.
    PLoS Comput Biol, Vol. 3, No. 7. (13 July 2007)
    by Yanay Ofran, Burkhard Rost
    posted to insilico interaction prediction protein sequence by zwang on 2007-08-29 02:25:39 as *** along with 7 people and 3 groups higueruelo bicko dchughes grahamc cjeans Jporci Pao-Yang G4ID ParkinsonLab_at_MaRS Genetics-of-Gambling
  • Protein–Protein Interaction Hotspots Carved into Sequences
    posted to interaction protein sequence structure by zwang on 2007-08-15 03:47:01 as ****
  • Characterization of conserved sequence elements in eukaryotic RNase P RNA reveals roles in holoenzyme assembly and tRNA processing.
    RNA, Vol. 11, No. 6. (June 2005), pp. 885-896.
    by S Xiao, JJ Day-Storms, C Srisawat, CA Fierke, DR Engelke
    posted to element eukaryota rna rnasep sequence by zwang on 2007-07-26 11:40:48 as ****
  • Heads or Tails: A Simple Reliability Check for Multiple Sequence Alignments
    Mol Biol Evol, Vol. 24, No. 6. (1 June 2007), pp. 1380-1383.
    by Giddy Landan, Dan Graur
    posted to alignment reliability sequence by zwang on 2007-06-14 02:10:16 as *** along with 7 people and 1 group aprasad rvosa BioNica stajich cjeans lilou mailund FAB-lab
  • Specificity in protein interactions and its relationship with sequence diversity and coevolution.
    Proc Natl Acad Sci U S A (27 April 2007)
    by Luke Hakes, Simon C C Lovell, Stephen G G Oliver, David L L Robertson
    posted to co-evolution diversity interaction protein sequence by zwang on 2007-05-09 07:25:09 as **** along with 9 people and 2 groups stevanspringer bjorns cjeans Garamonfok cursonivel1 tale winterschlaefer phoenixzxl chrys FAB-lab cursonivel1
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